Wall clock time and date at job start Tue Mar 31 2020 22:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.50052 * 2 1 4 4 C 1.53193 * 109.49775 * 120.06711 * 2 1 3 5 5 N 1.46927 * 108.77302 * 174.55110 * 4 2 1 6 6 C 1.36936 * 120.60574 * 126.42434 * 5 4 2 7 7 H 1.08005 * 119.99729 * 207.70176 * 6 5 4 8 8 C 1.38814 * 120.00157 * 27.69993 * 6 5 4 9 9 N 1.31623 * 119.99848 * 17.36350 * 8 6 5 10 10 Si 1.86797 * 120.00131 * 197.36696 * 8 6 5 11 11 H 1.48505 * 109.46906 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47417 * 119.99907 * 10 8 6 13 13 H 1.48498 * 109.47154 * 239.99764 * 10 8 6 14 14 C 1.46925 * 118.76433 * 306.44082 * 5 4 2 15 15 C 1.53191 * 108.77465 * 53.59328 * 14 5 4 16 16 C 1.53036 * 109.49557 * 239.93184 * 2 1 3 17 17 H 1.08999 * 109.46271 * 298.69456 * 16 2 1 18 18 N 1.46503 * 109.45992 * 58.66901 * 16 2 1 19 19 C 1.34773 * 120.00426 * 205.00119 * 18 16 2 20 20 O 1.21565 * 119.99956 * 359.97438 * 19 18 16 21 21 C 1.47754 * 120.00549 * 179.97438 * 19 18 16 22 22 C 1.40608 * 120.26518 * 359.72016 * 21 19 18 23 23 N 1.30801 * 121.53557 * 179.66717 * 22 21 19 24 24 C 1.33822 * 121.72086 * 0.64465 * 23 22 21 25 25 C 1.40518 * 120.82241 * 179.67396 * 24 23 22 26 26 C 1.36143 * 119.81565 * 179.97438 * 25 24 23 27 27 C 1.39341 * 121.08845 * 0.02562 * 26 25 24 28 28 C 1.36139 * 120.83005 * 359.97438 * 27 26 25 29 29 C 1.40536 * 119.62380 * 0.04526 * 28 27 26 30 30 C 1.39009 * 120.27112 * 179.97438 * 21 19 18 31 31 H 1.08997 * 109.47398 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46800 * 59.99369 * 1 2 3 33 33 H 1.09002 * 109.46501 * 299.99970 * 1 2 3 34 34 H 1.08997 * 109.58570 * 294.37494 * 4 2 1 35 35 H 1.09002 * 109.58851 * 54.79083 * 4 2 1 36 36 H 0.97000 * 119.99935 * 180.02562 * 9 8 6 37 37 H 1.09005 * 109.58845 * 293.80333 * 14 5 4 38 38 H 1.09004 * 109.58650 * 173.37729 * 14 5 4 39 39 H 1.09002 * 109.49923 * 185.41732 * 15 14 5 40 40 H 1.09000 * 109.52929 * 65.32585 * 15 14 5 41 41 H 0.97001 * 119.99849 * 24.99456 * 18 16 2 42 42 H 1.08001 * 119.22820 * 359.97438 * 22 21 19 43 43 H 1.08004 * 120.09392 * 0.02562 * 25 24 23 44 44 H 1.07996 * 119.44948 * 180.02562 * 26 25 24 45 45 H 1.07997 * 119.58051 * 180.02562 * 27 26 25 46 46 H 1.08003 * 120.18909 * 180.02562 * 28 27 26 47 47 H 1.08000 * 121.02069 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7235 1.2498 5 7 3.5046 -0.8296 1.1693 6 6 4.2936 -0.3797 2.1941 7 1 5.2989 -0.0402 1.9926 8 6 3.8013 -0.3600 3.4919 9 7 2.7378 -1.0702 3.8032 10 14 4.6482 0.6747 4.7964 11 1 5.8127 1.3731 4.1953 12 1 3.6917 1.6766 5.3316 13 1 5.1137 -0.2037 5.8996 14 6 4.1052 -1.4269 -0.0312 15 6 3.5709 -0.6948 -1.2662 16 6 2.0408 -0.7228 -1.2485 17 1 1.6968 -1.7570 -1.2356 18 7 1.5266 -0.0523 -2.4453 19 6 1.3984 -0.7372 -3.5989 20 8 1.7099 -1.9113 -3.6466 21 6 0.8793 -0.0611 -4.8058 22 6 0.5117 1.2951 -4.7556 23 7 0.0555 1.9198 -5.8103 24 6 -0.0964 1.2979 -6.9855 25 6 -0.5947 1.9857 -8.1049 26 6 -0.7405 1.3330 -9.2908 27 6 -0.4035 -0.0131 -9.4173 28 6 0.0823 -0.7135 -8.3558 29 6 0.2454 -0.0718 -7.1162 30 6 0.7454 -0.7621 -5.9987 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3632 0.5139 0.8900 34 1 1.7638 -0.1574 2.1389 35 1 1.6052 -1.7213 1.2985 36 1 2.3936 -1.0561 4.7100 37 1 3.8374 -2.4820 -0.0875 38 1 5.1896 -1.3248 0.0134 39 1 3.9334 -1.1892 -2.1674 40 1 3.9159 0.3391 -1.2546 41 1 1.2782 0.8846 -2.4074 42 1 0.6131 1.8349 -3.8256 43 1 -0.8606 3.0295 -8.0251 44 1 -1.1236 1.8675 -10.1475 45 1 -0.5286 -0.5067 -10.3697 46 1 0.3406 -1.7564 -8.4656 47 1 1.0158 -1.8056 -6.0645 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943175221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:13 Heat of formation + Delta-G solvation = 35.283337 kcal Electronic energy + Delta-G solvation = -28641.022827 eV Core-core repulsion = 24788.785056 eV Total energy + Delta-G solvation = -3852.237771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.26278 -39.76416 -37.80830 -37.11973 -34.62658 -33.74955 -32.53884 -31.86681 -31.00706 -30.41859 -29.28797 -26.02368 -25.62107 -24.43911 -24.29661 -22.45565 -22.29065 -20.90781 -20.73527 -19.53166 -18.39934 -17.99541 -17.45859 -16.71132 -16.10010 -15.70581 -15.17529 -14.94834 -14.79533 -14.57291 -14.37385 -14.08543 -13.82494 -13.77999 -13.61931 -13.37918 -13.12448 -12.90617 -12.56532 -12.17660 -12.16253 -12.06294 -11.86158 -11.49100 -11.33240 -11.10020 -10.85030 -10.75605 -10.68088 -10.38781 -10.33500 -10.14487 -10.01498 -9.80969 -9.66380 -9.46604 -9.19927 -8.79054 -8.63918 -8.47171 -6.70603 -5.81049 -3.22832 -0.09950 0.26818 1.52787 2.28206 3.12299 3.17040 3.36160 3.44362 3.46444 3.78854 3.83943 4.19849 4.36881 4.44257 4.47559 4.48165 4.67061 4.74313 4.86311 5.03442 5.19889 5.30270 5.38509 5.43859 5.50796 5.52137 5.56760 5.65729 5.67011 5.85248 5.90966 6.00062 6.06280 6.09410 6.11248 6.20828 6.32546 6.39421 6.43402 6.47993 6.56388 6.66701 6.77332 6.89263 6.97251 7.31419 7.48733 7.54927 7.65427 7.78993 8.23834 8.42780 9.19121 9.82333 10.38963 11.27727 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029280 B = 0.002162 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.038319 B =12947.587462 C =13225.083050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 H 0.068 0.932 4 C 0.181 3.819 5 N -0.593 5.593 6 C -0.251 4.251 7 H 0.067 0.933 8 C 0.001 3.999 9 N -0.902 5.902 10 Si 0.901 3.099 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.291 1.291 14 C 0.147 3.853 15 C -0.140 4.140 16 C 0.157 3.843 17 H 0.084 0.916 18 N -0.713 5.713 19 C 0.560 3.440 20 O -0.536 6.536 21 C -0.188 4.188 22 C 0.163 3.837 23 N -0.476 5.476 24 C 0.140 3.860 25 C -0.098 4.098 26 C -0.093 4.093 27 C -0.122 4.122 28 C -0.085 4.085 29 C -0.113 4.113 30 C 0.010 3.990 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.021 0.979 36 H 0.253 0.747 37 H 0.021 0.979 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.395 0.605 42 H 0.162 0.838 43 H 0.137 0.863 44 H 0.131 0.869 45 H 0.130 0.870 46 H 0.134 0.866 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.494 4.647 -24.555 26.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.144 4.144 3 H 0.087 0.913 4 C 0.054 3.946 5 N -0.315 5.315 6 C -0.381 4.381 7 H 0.084 0.916 8 C -0.197 4.197 9 N -0.547 5.547 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.218 1.218 14 C 0.020 3.980 15 C -0.181 4.181 16 C 0.054 3.946 17 H 0.102 0.898 18 N -0.363 5.363 19 C 0.345 3.655 20 O -0.414 6.414 21 C -0.193 4.193 22 C -0.011 4.011 23 N -0.183 5.183 24 C 0.019 3.981 25 C -0.117 4.117 26 C -0.113 4.113 27 C -0.140 4.140 28 C -0.104 4.104 29 C -0.115 4.115 30 C -0.017 4.017 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.230 0.770 42 H 0.179 0.821 43 H 0.155 0.845 44 H 0.149 0.851 45 H 0.148 0.852 46 H 0.152 0.848 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.573 4.681 -24.432 26.312 hybrid contribution 0.475 0.128 0.713 0.866 sum -8.097 4.809 -23.720 25.521 Atomic orbital electron populations 1.21738 0.95837 1.01542 1.00663 1.22182 0.94741 1.00697 0.96741 0.91311 1.20813 0.83050 0.97122 0.93592 1.44116 1.01756 1.69383 1.16295 1.19229 0.97757 1.35289 0.85796 0.91577 1.25045 0.98569 0.99104 0.96992 1.70039 1.25655 1.40215 1.18761 0.86236 0.78904 0.80002 0.81718 1.20266 1.21558 1.21751 1.20878 0.96714 0.94288 0.86078 1.22403 0.94634 1.01457 0.99583 1.21134 0.93941 0.97254 0.82279 0.89768 1.46249 1.65322 1.14305 1.10401 1.17942 0.78304 0.86426 0.82812 1.90788 1.50298 1.15670 1.84619 1.21098 1.06224 0.96154 0.95873 1.23086 0.90674 0.90450 0.96929 1.67962 1.13938 1.37767 0.98665 1.19029 0.96403 0.90170 0.92530 1.20845 0.99254 1.00596 0.90974 1.20997 0.98044 0.94692 0.97571 1.20957 0.99279 0.94579 0.99153 1.21094 0.97772 1.00155 0.91369 1.18854 1.02568 0.94822 0.95230 1.21992 0.89463 1.00335 0.89865 0.92954 0.93898 0.92499 0.88908 0.96084 0.93649 0.96138 0.92501 0.92619 0.92207 0.77020 0.82066 0.84470 0.85086 0.85241 0.84806 0.82856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.03 37.16 0.34 -1.76 16 2 C -0.12 -2.16 2.46 -90.50 -0.22 -2.38 16 3 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.18 4.13 4.59 -3.71 -0.02 4.12 16 5 N -0.59 -14.56 3.00 -172.31 -0.52 -15.08 16 6 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 7 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 8 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 9 N -0.90 -25.74 11.19 55.49 0.62 -25.12 16 10 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.15 3.12 6.52 -3.71 -0.02 3.10 16 15 C -0.14 -2.51 5.65 -26.61 -0.15 -2.66 16 16 C 0.16 2.64 1.88 -67.89 -0.13 2.51 16 17 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 18 N -0.71 -9.67 4.32 -54.74 -0.24 -9.90 16 19 C 0.56 8.05 7.74 -12.37 -0.10 7.96 16 20 O -0.54 -9.55 16.05 5.31 0.09 -9.47 16 21 C -0.19 -2.25 5.89 -104.83 -0.62 -2.87 16 22 C 0.16 1.76 10.68 -17.10 -0.18 1.57 16 23 N -0.48 -5.56 10.30 -10.67 -0.11 -5.67 16 24 C 0.14 1.52 6.61 -84.79 -0.56 0.96 16 25 C -0.10 -0.84 9.97 -39.48 -0.39 -1.23 16 26 C -0.09 -0.60 9.94 -39.92 -0.40 -1.00 16 27 C -0.12 -0.77 9.96 -39.93 -0.40 -1.16 16 28 C -0.09 -0.65 9.77 -39.47 -0.39 -1.04 16 29 C -0.11 -1.15 5.74 -106.81 -0.61 -1.77 16 30 C 0.01 0.11 9.46 -38.43 -0.36 -0.25 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.54 7.36 -51.93 -0.38 0.15 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 2.38 6.04 -51.93 -0.31 2.06 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.39 4.30 6.33 -40.82 -0.26 4.04 16 42 H 0.16 1.34 6.37 -52.49 -0.33 1.00 16 43 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 44 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 45 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 46 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 47 H 0.15 1.57 7.70 -52.49 -0.40 1.16 16 LS Contribution 380.87 15.07 5.74 5.74 Total: -1.00 -32.20 380.87 -10.59 -42.78 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.70 Total: 3.22 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -4.44 Total: -2.87 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.24 Total: -55.78 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.20 -10.59 -42.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943175221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.066 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds