Wall clock time and date at job start Tue Mar 31 2020 22:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.49611 * 2 1 4 4 C 1.52759 * 109.56584 * 240.02660 * 2 1 3 5 5 N 1.46926 * 109.00774 * 185.55384 * 4 2 1 6 6 C 1.36943 * 120.62758 * 233.58797 * 5 4 2 7 7 H 1.08001 * 119.99843 * 152.31122 * 6 5 4 8 8 C 1.38806 * 120.00009 * 332.30151 * 6 5 4 9 9 N 1.31616 * 120.00310 * 342.50379 * 8 6 5 10 10 Si 1.86801 * 119.99895 * 162.77019 * 8 6 5 11 11 H 1.48500 * 109.47233 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47043 * 120.00541 * 10 8 6 13 13 H 1.48499 * 109.47564 * 240.00214 * 10 8 6 14 14 C 1.46923 * 118.74121 * 53.30670 * 5 4 2 15 15 C 1.53185 * 108.77652 * 306.64678 * 14 5 4 16 16 C 1.53041 * 109.31552 * 54.63248 * 15 14 5 17 17 H 1.09000 * 109.45777 * 178.62807 * 16 15 14 18 18 N 1.46496 * 109.45814 * 58.65492 * 16 15 14 19 19 C 1.34774 * 120.00093 * 85.00446 * 18 16 15 20 20 O 1.21565 * 120.00046 * 359.97438 * 19 18 16 21 21 C 1.47764 * 119.99922 * 179.97438 * 19 18 16 22 22 C 1.40600 * 120.27012 * 0.02562 * 21 19 18 23 23 N 1.30802 * 121.53711 * 179.97438 * 22 21 19 24 24 C 1.33823 * 121.71972 * 0.02562 * 23 22 21 25 25 C 1.40525 * 120.81662 * 180.02562 * 24 23 22 26 26 C 1.36132 * 119.81419 * 179.97438 * 25 24 23 27 27 C 1.39338 * 121.08707 * 359.97438 * 26 25 24 28 28 C 1.36146 * 120.83520 * 0.02562 * 27 26 25 29 29 C 1.40542 * 119.61578 * 359.97438 * 28 27 26 30 30 C 1.39011 * 120.26537 * 179.72050 * 21 19 18 31 31 H 1.09003 * 109.47124 * 299.93977 * 1 2 3 32 32 H 1.08997 * 109.47281 * 59.93960 * 1 2 3 33 33 H 1.08997 * 109.46847 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.50461 * 65.67355 * 4 2 1 35 35 H 1.08998 * 109.43426 * 305.38910 * 4 2 1 36 36 H 0.96994 * 120.00524 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.58544 * 66.43706 * 14 5 4 38 38 H 1.09000 * 109.58920 * 186.85226 * 14 5 4 39 39 H 1.09001 * 109.49683 * 174.58184 * 15 14 5 40 40 H 1.09003 * 109.49731 * 294.64570 * 15 14 5 41 41 H 0.97004 * 119.99762 * 265.00151 * 18 16 15 42 42 H 1.08001 * 119.23014 * 359.97438 * 22 21 19 43 43 H 1.08006 * 120.09159 * 359.97438 * 25 24 23 44 44 H 1.08001 * 119.45267 * 179.97438 * 26 25 24 45 45 H 1.08004 * 119.58377 * 180.02562 * 27 26 25 46 46 H 1.07995 * 120.19088 * 179.97438 * 28 27 26 47 47 H 1.08005 * 121.02186 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7191 -1.2469 5 7 3.5046 -0.8295 -1.1692 6 6 4.2936 -0.3791 -2.1939 7 1 5.3003 -0.0434 -1.9928 8 6 3.7997 -0.3542 -3.4908 9 7 2.7352 -1.0624 -3.8034 10 14 4.6502 0.6786 -4.7945 11 1 5.8192 1.3697 -4.1937 12 1 5.1095 -0.2000 -5.9001 13 1 3.6982 1.6866 -5.3263 14 6 4.1053 -1.4266 0.0313 15 6 3.5708 -0.6946 1.2663 16 6 2.0408 -0.7226 1.2486 17 1 1.6582 -0.2235 2.1389 18 7 1.5784 -2.1126 1.2316 19 6 1.4489 -2.7940 2.3871 20 8 1.7163 -2.2553 3.4436 21 6 0.9819 -4.1958 2.3699 22 6 0.6716 -4.8245 1.1512 23 7 0.2568 -6.0642 1.1071 24 6 0.1064 -6.7958 2.2175 25 6 -0.3401 -8.1264 2.1480 26 6 -0.4854 -8.8521 3.2906 27 6 -0.1977 -8.2981 4.5363 28 6 0.2372 -7.0125 4.6447 29 6 0.3986 -6.2339 3.4858 30 6 0.8519 -4.9056 3.5580 31 1 -0.3633 0.5129 0.8905 32 1 -0.3634 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7646 -0.1502 -2.1344 35 1 1.6021 -1.7153 -1.2969 36 1 2.3898 -1.0447 -4.7096 37 1 3.8376 -2.4818 0.0876 38 1 5.1896 -1.3246 -0.0132 39 1 3.9334 -1.1890 2.1675 40 1 3.9164 0.3392 1.2543 41 1 1.3653 -2.5425 0.3885 42 1 0.7783 -4.2709 0.2300 43 1 -0.5674 -8.5720 1.1908 44 1 -0.8294 -9.8741 3.2304 45 1 -0.3212 -8.8961 5.4272 46 1 0.4568 -6.5935 5.6155 47 1 1.0876 -4.4489 4.5080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943175222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:17 Heat of formation + Delta-G solvation = 37.451786 kcal Electronic energy + Delta-G solvation = -29294.714205 eV Core-core repulsion = 25442.570465 eV Total energy + Delta-G solvation = -3852.143740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.13836 -39.80585 -37.82342 -37.00338 -34.30745 -33.61542 -32.45531 -31.88416 -30.84175 -30.28883 -29.41110 -26.03691 -25.52497 -24.53809 -24.24541 -22.33490 -22.21305 -21.22941 -20.82068 -18.69539 -18.48611 -17.98423 -17.23452 -16.70789 -16.07393 -15.31264 -15.01868 -14.89892 -14.77747 -14.49055 -14.38801 -13.97697 -13.79961 -13.66173 -13.62157 -13.30711 -13.17349 -13.05744 -12.64701 -12.07349 -12.05219 -11.98695 -11.73809 -11.48663 -11.25343 -11.06334 -10.97579 -10.74366 -10.71955 -10.38553 -10.18232 -10.13953 -9.98365 -9.79440 -9.49896 -9.45800 -9.07195 -8.71614 -8.53730 -8.48165 -6.72095 -5.83618 -3.25129 0.02833 0.41129 1.65281 2.41697 3.23093 3.31831 3.34989 3.43603 3.45435 3.92679 4.01320 4.32235 4.46448 4.49613 4.59110 4.61432 4.80953 4.85169 4.98297 5.18247 5.24606 5.27880 5.40795 5.50844 5.53022 5.61178 5.65016 5.68319 5.80264 5.81419 6.02918 6.05106 6.11180 6.11863 6.16323 6.24078 6.30801 6.43076 6.50705 6.51224 6.52375 6.62422 6.75388 6.88688 6.95668 7.24503 7.54623 7.66109 7.73050 7.77462 8.34811 8.40009 9.16523 9.79743 10.35683 11.24921 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017029 B = 0.002769 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.843705 B =10108.903236 C =10885.867451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 H 0.080 0.920 4 C 0.177 3.823 5 N -0.592 5.592 6 C -0.251 4.251 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.902 5.902 10 Si 0.901 3.099 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.289 1.289 14 C 0.147 3.853 15 C -0.146 4.146 16 C 0.160 3.840 17 H 0.075 0.925 18 N -0.702 5.702 19 C 0.561 3.439 20 O -0.545 6.545 21 C -0.187 4.187 22 C 0.166 3.834 23 N -0.474 5.474 24 C 0.140 3.860 25 C -0.097 4.097 26 C -0.095 4.095 27 C -0.123 4.123 28 C -0.086 4.086 29 C -0.114 4.114 30 C 0.008 3.992 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.092 0.908 35 H 0.014 0.986 36 H 0.253 0.747 37 H 0.017 0.983 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.403 0.597 42 H 0.165 0.835 43 H 0.138 0.862 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.133 0.867 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.114 -11.010 15.098 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 H 0.098 0.902 4 C 0.051 3.949 5 N -0.314 5.314 6 C -0.381 4.381 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.546 5.546 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.218 1.218 13 H -0.216 1.216 14 C 0.021 3.979 15 C -0.186 4.186 16 C 0.056 3.944 17 H 0.093 0.907 18 N -0.354 5.354 19 C 0.347 3.653 20 O -0.424 6.424 21 C -0.192 4.192 22 C -0.008 4.008 23 N -0.181 5.181 24 C 0.019 3.981 25 C -0.115 4.115 26 C -0.115 4.115 27 C -0.141 4.141 28 C -0.105 4.105 29 C -0.116 4.116 30 C -0.018 4.018 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.034 0.966 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.240 0.760 42 H 0.182 0.818 43 H 0.156 0.844 44 H 0.148 0.852 45 H 0.146 0.854 46 H 0.151 0.849 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.189 -11.110 14.869 20.288 hybrid contribution 0.520 0.687 -0.429 0.963 sum -7.669 -10.423 14.440 19.390 Atomic orbital electron populations 1.21727 0.95778 1.01247 1.00986 1.22072 0.94814 1.00886 0.97112 0.90212 1.20709 0.83238 0.96572 0.94363 1.44053 1.01614 1.69521 1.16213 1.19219 0.97584 1.35439 0.85822 0.91635 1.25004 0.98527 0.99112 0.96928 1.70019 1.25594 1.40216 1.18800 0.86251 0.78945 0.80013 0.81725 1.20298 1.21764 1.21564 1.20862 0.96599 0.94077 0.86373 1.22391 0.94924 1.01845 0.99450 1.20953 0.94427 0.80211 0.98769 0.90656 1.46113 1.66220 1.14538 1.08514 1.17914 0.77891 0.85057 0.84412 1.90745 1.51372 1.69679 1.30635 1.21080 1.06497 0.96338 0.95270 1.23178 0.90218 0.90416 0.96974 1.68000 1.13488 1.06706 1.29891 1.19062 0.96357 0.94616 0.88044 1.20862 0.99210 0.91819 0.99626 1.20975 0.98209 1.00170 0.92123 1.20934 0.99708 0.95475 0.97969 1.21066 0.97959 0.94162 0.97278 1.18845 1.02961 0.94914 0.94887 1.21947 0.89607 0.91446 0.98831 0.93628 0.92493 0.93219 0.88999 0.96800 0.93667 0.96557 0.92861 0.92510 0.91281 0.75957 0.81849 0.84436 0.85155 0.85354 0.84934 0.82977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.05 37.16 0.34 -1.75 16 2 C -0.13 -2.23 2.66 -90.72 -0.24 -2.47 16 3 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 4 C 0.18 3.83 4.27 -3.93 -0.02 3.81 16 5 N -0.59 -13.96 3.00 -172.59 -0.52 -14.47 16 6 C -0.25 -6.64 9.59 -15.06 -0.14 -6.78 16 7 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 8 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 9 N -0.90 -25.01 11.20 55.49 0.62 -24.39 16 10 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.15 3.01 6.26 -3.72 -0.02 2.98 16 15 C -0.15 -2.58 5.77 -26.61 -0.15 -2.74 16 16 C 0.16 2.67 2.21 -67.89 -0.15 2.52 16 17 H 0.08 1.26 7.58 -51.93 -0.39 0.87 16 18 N -0.70 -10.91 3.55 -54.74 -0.19 -11.11 16 19 C 0.56 8.77 7.74 -12.37 -0.10 8.67 16 20 O -0.55 -9.82 16.04 5.31 0.09 -9.73 16 21 C -0.19 -2.56 5.89 -104.83 -0.62 -3.18 16 22 C 0.17 2.25 10.68 -17.10 -0.18 2.07 16 23 N -0.47 -6.68 10.30 -10.67 -0.11 -6.79 16 24 C 0.14 1.78 6.61 -84.79 -0.56 1.22 16 25 C -0.10 -0.98 9.97 -39.48 -0.39 -1.37 16 26 C -0.09 -0.73 9.94 -39.93 -0.40 -1.13 16 27 C -0.12 -0.91 9.96 -39.92 -0.40 -1.30 16 28 C -0.09 -0.75 9.77 -39.47 -0.39 -1.14 16 29 C -0.11 -1.32 5.74 -106.82 -0.61 -1.93 16 30 C 0.01 0.10 9.46 -38.43 -0.36 -0.26 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.71 7.54 -51.93 -0.39 0.32 16 34 H 0.09 2.28 6.04 -51.93 -0.31 1.97 16 35 H 0.01 0.31 6.64 -51.93 -0.34 -0.04 16 36 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.02 0.34 7.74 -51.93 -0.40 -0.06 16 38 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.40 6.15 4.76 -40.82 -0.19 5.95 16 42 H 0.16 2.06 6.37 -52.49 -0.33 1.72 16 43 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 44 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 46 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.15 1.68 7.70 -52.48 -0.40 1.28 16 LS Contribution 376.92 15.07 5.68 5.68 Total: -1.00 -30.80 376.92 -10.49 -41.29 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.54 Total: 6.13 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -4.48 Total: -2.79 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -0.20 Total: -56.76 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.80 -10.49 -41.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943175222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.743 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds