Wall clock time and date at job start Tue Mar 31 2020 22:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.49611 * 2 1 4 4 C 1.52759 * 109.56584 * 240.02660 * 2 1 3 5 5 N 1.46926 * 109.00774 * 185.55384 * 4 2 1 6 6 C 1.36943 * 120.62758 * 233.58797 * 5 4 2 7 7 H 1.08001 * 119.99843 * 152.31122 * 6 5 4 8 8 C 1.38806 * 120.00009 * 332.30151 * 6 5 4 9 9 N 1.31616 * 120.00310 * 342.50379 * 8 6 5 10 10 Si 1.86801 * 119.99895 * 162.77019 * 8 6 5 11 11 H 1.48500 * 109.47233 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47043 * 120.00541 * 10 8 6 13 13 H 1.48499 * 109.47564 * 240.00214 * 10 8 6 14 14 C 1.46923 * 118.74121 * 53.30670 * 5 4 2 15 15 C 1.53185 * 108.77652 * 306.64678 * 14 5 4 16 16 C 1.53041 * 109.31552 * 54.63248 * 15 14 5 17 17 H 1.09000 * 109.45777 * 178.62807 * 16 15 14 18 18 N 1.46496 * 109.45814 * 58.65492 * 16 15 14 19 19 C 1.34774 * 120.00093 * 85.00446 * 18 16 15 20 20 O 1.21565 * 120.00046 * 359.97438 * 19 18 16 21 21 C 1.47764 * 119.99922 * 179.97438 * 19 18 16 22 22 C 1.40600 * 120.27012 * 0.02562 * 21 19 18 23 23 N 1.30802 * 121.53711 * 179.97438 * 22 21 19 24 24 C 1.33823 * 121.71972 * 0.02562 * 23 22 21 25 25 C 1.40525 * 120.81662 * 180.02562 * 24 23 22 26 26 C 1.36132 * 119.81419 * 179.97438 * 25 24 23 27 27 C 1.39338 * 121.08707 * 359.97438 * 26 25 24 28 28 C 1.36146 * 120.83520 * 0.02562 * 27 26 25 29 29 C 1.40542 * 119.61578 * 359.97438 * 28 27 26 30 30 C 1.39011 * 120.26537 * 179.72050 * 21 19 18 31 31 H 1.09003 * 109.47124 * 299.93977 * 1 2 3 32 32 H 1.08997 * 109.47281 * 59.93960 * 1 2 3 33 33 H 1.08997 * 109.46847 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.50461 * 65.67355 * 4 2 1 35 35 H 1.08998 * 109.43426 * 305.38910 * 4 2 1 36 36 H 0.96994 * 120.00524 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.58544 * 66.43706 * 14 5 4 38 38 H 1.09000 * 109.58920 * 186.85226 * 14 5 4 39 39 H 1.09001 * 109.49683 * 174.58184 * 15 14 5 40 40 H 1.09003 * 109.49731 * 294.64570 * 15 14 5 41 41 H 0.97004 * 119.99762 * 265.00151 * 18 16 15 42 42 H 1.08001 * 119.23014 * 359.97438 * 22 21 19 43 43 H 1.08006 * 120.09159 * 359.97438 * 25 24 23 44 44 H 1.08001 * 119.45267 * 179.97438 * 26 25 24 45 45 H 1.08004 * 119.58377 * 180.02562 * 27 26 25 46 46 H 1.07995 * 120.19088 * 179.97438 * 28 27 26 47 47 H 1.08005 * 121.02186 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7191 -1.2469 5 7 3.5046 -0.8295 -1.1692 6 6 4.2936 -0.3791 -2.1939 7 1 5.3003 -0.0434 -1.9928 8 6 3.7997 -0.3542 -3.4908 9 7 2.7352 -1.0624 -3.8034 10 14 4.6502 0.6786 -4.7945 11 1 5.8192 1.3697 -4.1937 12 1 5.1095 -0.2000 -5.9001 13 1 3.6982 1.6866 -5.3263 14 6 4.1053 -1.4266 0.0313 15 6 3.5708 -0.6946 1.2663 16 6 2.0408 -0.7226 1.2486 17 1 1.6582 -0.2235 2.1389 18 7 1.5784 -2.1126 1.2316 19 6 1.4489 -2.7940 2.3871 20 8 1.7163 -2.2553 3.4436 21 6 0.9819 -4.1958 2.3699 22 6 0.6716 -4.8245 1.1512 23 7 0.2568 -6.0642 1.1071 24 6 0.1064 -6.7958 2.2175 25 6 -0.3401 -8.1264 2.1480 26 6 -0.4854 -8.8521 3.2906 27 6 -0.1977 -8.2981 4.5363 28 6 0.2372 -7.0125 4.6447 29 6 0.3986 -6.2339 3.4858 30 6 0.8519 -4.9056 3.5580 31 1 -0.3633 0.5129 0.8905 32 1 -0.3634 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7646 -0.1502 -2.1344 35 1 1.6021 -1.7153 -1.2969 36 1 2.3898 -1.0447 -4.7096 37 1 3.8376 -2.4818 0.0876 38 1 5.1896 -1.3246 -0.0132 39 1 3.9334 -1.1890 2.1675 40 1 3.9164 0.3392 1.2543 41 1 1.3653 -2.5425 0.3885 42 1 0.7783 -4.2709 0.2300 43 1 -0.5674 -8.5720 1.1908 44 1 -0.8294 -9.8741 3.2304 45 1 -0.3212 -8.8961 5.4272 46 1 0.4568 -6.5935 5.6155 47 1 1.0876 -4.4489 4.5080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943175222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:16 Heat of formation + Delta-G solvation = 20.700320 kcal Electronic energy + Delta-G solvation = -29295.440603 eV Core-core repulsion = 25442.570465 eV Total energy + Delta-G solvation = -3852.870138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.08463 -41.03889 -39.20727 -37.90344 -35.97228 -34.51601 -33.87480 -33.54031 -32.01398 -31.10056 -30.86119 -27.53595 -27.18281 -25.66920 -25.13105 -23.82762 -23.11588 -22.68634 -22.12733 -20.17598 -19.49684 -18.91175 -18.73461 -18.01996 -17.05109 -16.76339 -16.54407 -16.20530 -15.74088 -15.57927 -15.55623 -15.30825 -15.19333 -14.92694 -14.74286 -14.59136 -14.46868 -14.20498 -14.12880 -13.58731 -13.07664 -12.94505 -12.80005 -12.76769 -12.73280 -12.56641 -12.48641 -12.43238 -12.15235 -11.79483 -11.69933 -11.61846 -11.49680 -11.28295 -11.10870 -10.54741 -10.54302 -10.09894 -9.82670 -9.31032 -8.65688 -7.86271 -5.29938 -0.82570 -0.45258 0.83201 1.46319 1.49545 1.50156 1.58753 2.09709 2.22498 2.52128 3.04517 3.12177 3.28338 3.53176 3.56632 3.66041 3.69250 3.76780 3.83235 3.97482 4.05134 4.18692 4.21981 4.31973 4.35026 4.41672 4.58850 4.66743 4.69751 4.74259 4.77663 4.86362 4.93722 4.96746 5.03301 5.04627 5.09750 5.14156 5.30108 5.34381 5.35694 5.40271 5.45514 5.51418 5.57451 5.66916 5.77488 5.84086 6.40715 6.46564 6.73720 7.10162 7.17066 7.86997 8.38135 9.19551 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017029 B = 0.002769 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.843705 B =10108.903236 C =10885.867451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 H 0.075 0.925 4 C 0.187 3.813 5 N -0.607 5.607 6 C -0.261 4.261 7 H 0.062 0.938 8 C -0.045 4.045 9 N -0.927 5.927 10 Si 0.961 3.039 11 H -0.271 1.271 12 H -0.295 1.295 13 H -0.289 1.289 14 C 0.148 3.852 15 C -0.135 4.135 16 C 0.167 3.833 17 H 0.084 0.916 18 N -0.701 5.701 19 C 0.568 3.432 20 O -0.570 6.570 21 C -0.205 4.205 22 C 0.157 3.843 23 N -0.497 5.497 24 C 0.117 3.883 25 C -0.122 4.122 26 C -0.076 4.076 27 C -0.114 4.114 28 C -0.090 4.090 29 C -0.127 4.127 30 C 0.016 3.984 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.006 0.994 36 H 0.250 0.750 37 H 0.013 0.987 38 H 0.047 0.953 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.404 0.596 42 H 0.162 0.838 43 H 0.141 0.859 44 H 0.165 0.835 45 H 0.166 0.834 46 H 0.158 0.842 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.827 -12.405 17.511 23.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.136 4.136 3 H 0.093 0.907 4 C 0.061 3.939 5 N -0.330 5.330 6 C -0.391 4.391 7 H 0.080 0.920 8 C -0.241 4.241 9 N -0.573 5.573 10 Si 0.790 3.210 11 H -0.195 1.195 12 H -0.222 1.222 13 H -0.216 1.216 14 C 0.023 3.977 15 C -0.174 4.174 16 C 0.063 3.937 17 H 0.102 0.898 18 N -0.352 5.352 19 C 0.355 3.645 20 O -0.451 6.451 21 C -0.211 4.211 22 C -0.017 4.017 23 N -0.205 5.205 24 C -0.004 4.004 25 C -0.140 4.140 26 C -0.096 4.096 27 C -0.131 4.131 28 C -0.109 4.109 29 C -0.129 4.129 30 C -0.011 4.011 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.024 0.976 36 H 0.059 0.941 37 H 0.031 0.969 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.241 0.759 42 H 0.179 0.821 43 H 0.159 0.841 44 H 0.183 0.817 45 H 0.184 0.816 46 H 0.176 0.824 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.903 -12.510 17.301 23.132 hybrid contribution 0.720 0.905 -1.070 1.576 sum -8.183 -11.605 16.230 21.566 Atomic orbital electron populations 1.21670 0.93632 1.01866 1.01920 1.21869 0.96517 0.99945 0.95278 0.90688 1.20532 0.82394 0.96011 0.94984 1.44276 1.02301 1.69943 1.16502 1.19468 0.97824 1.35062 0.86776 0.92033 1.25661 0.99448 1.00301 0.98654 1.70149 1.26859 1.41483 1.18848 0.85309 0.78124 0.78402 0.79192 1.19509 1.22178 1.21582 1.20904 0.96301 0.94078 0.86443 1.22252 0.95669 1.01519 0.98007 1.20826 0.93628 0.80868 0.98417 0.89817 1.46052 1.66231 1.14143 1.08756 1.18102 0.77033 0.85571 0.83762 1.90720 1.52693 1.70412 1.31289 1.20876 1.08697 0.95472 0.96026 1.23125 0.90944 0.90631 0.97018 1.67970 1.14309 1.06968 1.31220 1.19502 0.97050 0.95655 0.88197 1.21067 1.00640 0.91247 1.01070 1.21445 0.95494 1.01294 0.91349 1.21427 0.97462 0.95098 0.99147 1.21419 0.97587 0.94620 0.97256 1.19059 1.03318 0.94905 0.95643 1.22153 0.88469 0.91794 0.98660 0.91598 0.92607 0.92805 0.92388 0.97647 0.94098 0.96921 0.93394 0.91837 0.91061 0.75877 0.82059 0.84134 0.81726 0.81605 0.82424 0.81856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 9.05 71.98 0.65 -3.23 16 2 C -0.12 -4.02 2.66 -10.86 -0.03 -4.05 16 3 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 4 C 0.19 8.28 4.27 86.22 0.37 8.64 16 5 N -0.61 -29.28 3.00 -699.95 -2.10 -31.39 16 6 C -0.26 -14.07 9.59 84.03 0.81 -13.26 16 7 H 0.06 3.30 7.88 -2.91 -0.02 3.27 16 8 C -0.04 -2.44 4.91 84.86 0.42 -2.02 16 9 N -0.93 -52.87 11.20 21.65 0.24 -52.63 16 10 Si 0.96 44.32 29.59 68.60 2.03 46.35 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 12 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 13 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 14 C 0.15 6.15 6.26 86.36 0.54 6.69 16 15 C -0.13 -4.71 5.77 30.67 0.18 -4.53 16 16 C 0.17 5.47 2.21 45.02 0.10 5.57 16 17 H 0.08 2.69 7.58 -2.39 -0.02 2.67 16 18 N -0.70 -21.90 3.55 -445.36 -1.58 -23.48 16 19 C 0.57 17.74 7.74 86.76 0.67 18.41 16 20 O -0.57 -20.21 16.04 -3.92 -0.06 -20.27 16 21 C -0.21 -5.72 5.89 -20.00 -0.12 -5.84 16 22 C 0.16 4.44 10.68 85.42 0.91 5.36 16 23 N -0.50 -14.47 10.30 -187.69 -1.93 -16.41 16 24 C 0.12 2.91 6.61 40.27 0.27 3.18 16 25 C -0.12 -2.30 9.97 22.34 0.22 -2.07 16 26 C -0.08 -0.91 9.94 22.04 0.22 -0.69 16 27 C -0.11 -1.19 9.96 22.05 0.22 -0.97 16 28 C -0.09 -1.30 9.77 22.34 0.22 -1.08 16 29 C -0.13 -2.79 5.74 -21.29 -0.12 -2.91 16 30 C 0.02 0.38 9.46 23.02 0.22 0.59 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.05 1.52 7.54 -2.39 -0.02 1.50 16 34 H 0.06 2.98 6.04 -2.39 -0.01 2.97 16 35 H 0.01 0.26 6.64 -2.39 -0.02 0.24 16 36 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 37 H 0.01 0.54 7.74 -2.38 -0.02 0.52 16 38 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 39 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.40 12.69 4.76 -92.71 -0.44 12.24 16 42 H 0.16 4.38 6.37 -2.91 -0.02 4.36 16 43 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 44 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 45 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 46 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 47 H 0.16 3.42 7.70 -2.91 -0.02 3.39 16 Total: -1.00 -67.83 376.92 2.88 -64.95 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.55 Total: 25.07 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 5.74 Total: 7.80 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -5.37 Total: -123.90 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.06 Total: -20.27 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -67.83 2.88 -64.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943175222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.649 kcal (2) G-P(sol) polarization free energy of solvation -67.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds