Wall clock time and date at job start Tue Mar 31 2020 22:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.52612 * 2 1 4 4 C 1.53197 * 109.49864 * 120.07805 * 2 1 3 5 5 N 1.46923 * 108.77787 * 174.58505 * 4 2 1 6 6 C 1.36934 * 120.63351 * 126.41076 * 5 4 2 7 7 H 1.07995 * 120.00183 * 331.81726 * 6 5 4 8 8 C 1.38813 * 119.99901 * 151.80638 * 6 5 4 9 9 N 1.31612 * 120.00367 * 343.08921 * 8 6 5 10 10 Si 1.86800 * 119.99623 * 163.09181 * 8 6 5 11 11 H 1.48495 * 109.47324 * 60.00247 * 10 8 6 12 12 H 1.48501 * 109.46885 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47143 * 299.99785 * 10 8 6 14 14 C 1.46930 * 118.74021 * 306.39681 * 5 4 2 15 15 C 1.53186 * 108.77662 * 53.60061 * 14 5 4 16 16 C 1.53039 * 109.31941 * 305.36961 * 15 14 5 17 17 H 1.09001 * 109.45808 * 301.35983 * 16 15 14 18 18 N 1.46501 * 109.46583 * 181.38092 * 16 15 14 19 19 C 1.34776 * 119.99347 * 84.99585 * 18 16 15 20 20 O 1.21545 * 120.00524 * 0.02562 * 19 18 16 21 21 C 1.47883 * 119.99213 * 179.97438 * 19 18 16 22 22 C 1.40572 * 119.71067 * 359.97438 * 21 19 18 23 23 C 1.35821 * 120.73473 * 180.02562 * 22 21 19 24 24 C 1.40543 * 119.98568 * 359.95794 * 23 22 21 25 25 C 1.40821 * 121.13683 * 180.02562 * 24 23 22 26 26 C 1.36550 * 118.19981 * 180.02562 * 25 24 23 27 27 C 1.39423 * 119.93847 * 0.25265 * 26 25 24 28 28 N 1.31018 * 121.71250 * 359.48446 * 27 26 25 29 29 C 1.33746 * 121.35062 * 0.50411 * 28 27 26 30 30 C 1.38407 * 119.70301 * 180.02562 * 21 19 18 31 31 H 1.08997 * 109.47343 * 180.08337 * 1 2 3 32 32 H 1.09005 * 109.46822 * 300.08314 * 1 2 3 33 33 H 1.09001 * 109.47197 * 60.08018 * 1 2 3 34 34 H 1.09002 * 109.58431 * 54.80105 * 4 2 1 35 35 H 1.08999 * 109.70457 * 294.44278 * 4 2 1 36 36 H 0.96999 * 120.00328 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.58466 * 293.82107 * 14 5 4 38 38 H 1.08992 * 109.58946 * 173.39340 * 14 5 4 39 39 H 1.09001 * 109.49793 * 185.41605 * 15 14 5 40 40 H 1.09010 * 109.52462 * 65.34091 * 15 14 5 41 41 H 0.96999 * 120.00042 * 265.00273 * 18 16 15 42 42 H 1.07994 * 119.63118 * 0.02562 * 22 21 19 43 43 H 1.08003 * 120.00374 * 180.02562 * 23 22 21 44 44 H 1.07997 * 120.89975 * 0.04292 * 25 24 23 45 45 H 1.08000 * 120.03324 * 179.97438 * 26 25 24 46 46 H 1.07999 * 119.13992 * 179.72671 * 27 26 25 47 47 H 1.07999 * 120.23498 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5045 -0.8291 1.1697 6 6 4.2935 -0.3792 2.1944 7 1 3.9502 0.4260 2.8269 8 6 5.5347 -0.9584 2.4205 9 7 5.8205 -2.1295 1.8924 10 14 6.7992 -0.0754 3.4744 11 1 6.2479 0.1348 4.8371 12 1 8.0328 -0.8977 3.5604 13 1 7.1225 1.2387 2.8630 14 6 4.1053 -1.4267 -0.0307 15 6 3.5708 -0.6951 -1.2659 16 6 2.0407 -0.7231 -1.2484 17 1 1.6966 -1.7573 -1.2350 18 7 1.5264 -0.0530 -2.4453 19 6 1.3972 -0.7387 -3.5983 20 8 1.7069 -1.9131 -3.6451 21 6 0.8774 -0.0624 -4.8064 22 6 0.5196 1.2956 -4.7450 23 6 0.0396 1.9372 -5.8416 24 6 -0.1030 1.2430 -7.0553 25 6 -0.5976 1.8844 -8.2073 26 6 -0.7122 1.1526 -9.3544 27 6 -0.3483 -0.1934 -9.3603 28 7 0.1161 -0.7859 -8.2881 29 6 0.2533 -0.1264 -7.1327 30 6 0.7467 -0.7725 -5.9872 31 1 -0.3634 -1.0276 0.0015 32 1 -0.3633 0.5152 0.8893 33 1 -0.3633 0.5126 -0.8907 34 1 1.6052 -1.7216 1.2981 35 1 1.7637 -0.1600 2.1403 36 1 6.6879 -2.5340 2.0500 37 1 3.8375 -2.4818 -0.0867 38 1 5.1895 -1.3246 0.0138 39 1 3.9333 -1.1898 -2.1670 40 1 3.9159 0.3388 -1.2547 41 1 1.2790 0.8842 -2.4079 42 1 0.6276 1.8348 -3.8155 43 1 -0.2313 2.9810 -5.7813 44 1 -0.8785 2.9270 -8.1842 45 1 -1.0885 1.6146 -10.2551 46 1 -0.4483 -0.7612 -10.2735 47 1 1.0221 -1.8159 -6.0276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943703128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:59 Heat of formation + Delta-G solvation = 36.963050 kcal Electronic energy + Delta-G solvation = -28617.823299 eV Core-core repulsion = 24765.658365 eV Total energy + Delta-G solvation = -3852.164933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.21878 -39.86049 -37.87758 -36.84086 -34.60452 -33.82993 -32.76657 -31.33622 -30.98928 -30.34424 -29.64728 -26.02439 -25.64839 -24.42935 -24.19752 -22.58444 -22.08172 -21.00757 -20.74525 -19.56282 -18.38663 -17.80177 -17.22227 -16.71064 -16.22905 -15.82381 -15.02341 -14.83110 -14.79395 -14.45878 -14.36167 -14.20036 -13.88313 -13.81839 -13.54736 -13.44242 -13.27674 -12.80155 -12.65111 -12.18740 -12.15738 -11.95877 -11.88026 -11.48724 -11.30954 -11.05890 -10.92372 -10.80173 -10.65806 -10.35335 -10.24470 -10.03836 -9.92305 -9.84793 -9.78517 -9.48220 -9.17646 -8.74043 -8.61066 -8.41414 -6.67905 -5.77924 -3.21331 -0.06715 0.29507 1.55700 2.22865 3.19048 3.23225 3.38805 3.44833 3.45485 3.82134 3.93981 4.17801 4.32508 4.46727 4.49373 4.54465 4.62197 4.79135 4.83611 5.09195 5.14271 5.30397 5.40256 5.40436 5.48496 5.51004 5.54235 5.61166 5.68599 5.88836 5.92031 5.96428 5.98082 6.09802 6.13128 6.24513 6.26783 6.35080 6.39645 6.44607 6.60762 6.67264 6.78587 6.91997 6.95964 7.37838 7.53098 7.64270 7.69820 7.79711 8.32365 8.45499 9.21266 9.84567 10.41342 11.30552 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023919 B = 0.002203 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.323970 B =12708.996365 C =12958.983482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 H 0.071 0.929 4 C 0.155 3.845 5 N -0.592 5.592 6 C -0.256 4.256 7 H 0.065 0.935 8 C 0.003 3.997 9 N -0.901 5.901 10 Si 0.903 3.097 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.284 1.284 14 C 0.174 3.826 15 C -0.148 4.148 16 C 0.157 3.843 17 H 0.084 0.916 18 N -0.714 5.714 19 C 0.552 3.448 20 O -0.530 6.530 21 C -0.111 4.111 22 C -0.089 4.089 23 C -0.102 4.102 24 C -0.089 4.089 25 C -0.061 4.061 26 C -0.170 4.170 27 C 0.128 3.872 28 N -0.465 5.465 29 C 0.117 3.883 30 C -0.025 4.025 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.020 0.980 35 H 0.058 0.942 36 H 0.255 0.745 37 H 0.021 0.979 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.394 0.606 42 H 0.132 0.868 43 H 0.136 0.864 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.161 0.839 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.487 10.769 -20.335 27.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 H 0.089 0.911 4 C 0.028 3.972 5 N -0.314 5.314 6 C -0.385 4.385 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.545 5.545 10 Si 0.732 3.268 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.211 1.211 14 C 0.047 3.953 15 C -0.188 4.188 16 C 0.054 3.946 17 H 0.102 0.898 18 N -0.365 5.365 19 C 0.338 3.662 20 O -0.408 6.408 21 C -0.116 4.116 22 C -0.107 4.107 23 C -0.120 4.120 24 C -0.091 4.091 25 C -0.087 4.087 26 C -0.190 4.190 27 C -0.045 4.045 28 N -0.173 5.173 29 C -0.003 4.003 30 C -0.045 4.045 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.039 0.961 38 H 0.108 0.892 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.229 0.771 42 H 0.150 0.850 43 H 0.154 0.846 44 H 0.158 0.842 45 H 0.157 0.843 46 H 0.178 0.822 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.804 8.899 -20.191 26.571 hybrid contribution 0.333 1.863 0.434 1.942 sum -14.470 10.762 -19.757 26.750 Atomic orbital electron populations 1.21778 0.95785 1.01673 1.00793 1.21975 0.94505 1.00597 0.96481 0.91055 1.20889 0.86019 0.96651 0.93682 1.44091 0.99261 1.71470 1.16624 1.19113 0.98586 1.11995 1.08815 0.91710 1.25065 0.99978 0.95316 0.99220 1.70019 1.22247 1.14387 1.47801 0.86372 0.81097 0.79041 0.80249 1.20878 1.21639 1.21066 1.20762 0.99425 0.93137 0.81943 1.22587 0.93760 1.01579 1.00879 1.21116 0.94643 0.96961 0.81906 0.89796 1.46221 1.65580 1.14189 1.10470 1.18145 0.78478 0.86533 0.83038 1.90805 1.49769 1.15674 1.84524 1.20063 1.02564 0.94353 0.94654 1.21007 0.97205 0.93377 0.99155 1.20864 0.99760 1.00028 0.91398 1.18960 1.00311 0.94566 0.95301 1.21516 0.95239 1.00253 0.91697 1.21969 1.01755 0.95872 0.99418 1.23030 0.92598 0.92372 0.96527 1.68044 1.12439 1.38119 0.98682 1.18785 0.98705 0.90208 0.92648 1.21279 0.93296 1.00897 0.89011 0.92820 0.92693 0.93531 0.96169 0.92355 0.93498 0.96075 0.89237 0.92715 0.92630 0.77137 0.84985 0.84634 0.84173 0.84333 0.82167 0.83079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.03 37.15 0.34 -1.52 16 2 C -0.11 -1.86 2.46 -90.50 -0.22 -2.08 16 3 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.15 3.15 5.80 -3.71 -0.02 3.12 16 5 N -0.59 -14.67 2.99 -172.32 -0.52 -15.19 16 6 C -0.26 -6.93 9.58 -15.06 -0.14 -7.07 16 7 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 8 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 9 N -0.90 -26.31 11.20 55.49 0.62 -25.69 16 10 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 14 C 0.17 4.22 5.30 -3.71 -0.02 4.20 16 15 C -0.15 -2.94 5.65 -26.61 -0.15 -3.09 16 16 C 0.16 2.70 1.88 -67.89 -0.13 2.57 16 17 H 0.08 1.64 7.57 -51.93 -0.39 1.25 16 18 N -0.71 -9.95 4.31 -54.70 -0.24 -10.19 16 19 C 0.55 8.46 7.73 -12.31 -0.10 8.36 16 20 O -0.53 -10.27 15.96 5.33 0.08 -10.19 16 21 C -0.11 -1.38 5.87 -105.01 -0.62 -2.00 16 22 C -0.09 -0.82 9.44 -39.57 -0.37 -1.20 16 23 C -0.10 -0.82 9.74 -39.58 -0.39 -1.20 16 24 C -0.09 -0.84 5.75 -106.73 -0.61 -1.46 16 25 C -0.06 -0.41 9.88 -39.21 -0.39 -0.80 16 26 C -0.17 -1.03 10.03 -39.75 -0.40 -1.42 16 27 C 0.13 1.01 11.15 -17.46 -0.19 0.82 16 28 N -0.47 -5.37 10.34 -10.98 -0.11 -5.48 16 29 C 0.12 1.39 6.60 -84.87 -0.56 0.83 16 30 C -0.03 -0.33 9.56 -38.68 -0.37 -0.70 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.52 7.36 -51.93 -0.38 0.14 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16 41 H 0.39 4.27 6.29 -40.82 -0.26 4.01 16 42 H 0.13 0.91 6.34 -52.49 -0.33 0.58 16 43 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 44 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 45 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 46 H 0.16 0.76 8.06 -52.49 -0.42 0.33 16 47 H 0.15 2.12 7.60 -52.49 -0.40 1.72 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -33.56 380.65 -10.57 -44.14 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.69 Total: 2.90 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -4.43 Total: -2.63 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.24 Total: -56.55 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.56 -10.57 -44.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943703128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.099 kcal (2) G-P(sol) polarization free energy of solvation -33.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds