Wall clock time and date at job start Tue Mar 31 2020 22:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.52612 * 2 1 4 4 C 1.53197 * 109.49864 * 120.07805 * 2 1 3 5 5 N 1.46923 * 108.77787 * 174.58505 * 4 2 1 6 6 C 1.36934 * 120.63351 * 126.41076 * 5 4 2 7 7 H 1.07995 * 120.00183 * 331.81726 * 6 5 4 8 8 C 1.38813 * 119.99901 * 151.80638 * 6 5 4 9 9 N 1.31612 * 120.00367 * 343.08921 * 8 6 5 10 10 Si 1.86800 * 119.99623 * 163.09181 * 8 6 5 11 11 H 1.48495 * 109.47324 * 60.00247 * 10 8 6 12 12 H 1.48501 * 109.46885 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47143 * 299.99785 * 10 8 6 14 14 C 1.46930 * 118.74021 * 306.39681 * 5 4 2 15 15 C 1.53186 * 108.77662 * 53.60061 * 14 5 4 16 16 C 1.53039 * 109.31941 * 305.36961 * 15 14 5 17 17 H 1.09001 * 109.45808 * 301.35983 * 16 15 14 18 18 N 1.46501 * 109.46583 * 181.38092 * 16 15 14 19 19 C 1.34776 * 119.99347 * 84.99585 * 18 16 15 20 20 O 1.21545 * 120.00524 * 0.02562 * 19 18 16 21 21 C 1.47883 * 119.99213 * 179.97438 * 19 18 16 22 22 C 1.40572 * 119.71067 * 359.97438 * 21 19 18 23 23 C 1.35821 * 120.73473 * 180.02562 * 22 21 19 24 24 C 1.40543 * 119.98568 * 359.95794 * 23 22 21 25 25 C 1.40821 * 121.13683 * 180.02562 * 24 23 22 26 26 C 1.36550 * 118.19981 * 180.02562 * 25 24 23 27 27 C 1.39423 * 119.93847 * 0.25265 * 26 25 24 28 28 N 1.31018 * 121.71250 * 359.48446 * 27 26 25 29 29 C 1.33746 * 121.35062 * 0.50411 * 28 27 26 30 30 C 1.38407 * 119.70301 * 180.02562 * 21 19 18 31 31 H 1.08997 * 109.47343 * 180.08337 * 1 2 3 32 32 H 1.09005 * 109.46822 * 300.08314 * 1 2 3 33 33 H 1.09001 * 109.47197 * 60.08018 * 1 2 3 34 34 H 1.09002 * 109.58431 * 54.80105 * 4 2 1 35 35 H 1.08999 * 109.70457 * 294.44278 * 4 2 1 36 36 H 0.96999 * 120.00328 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.58466 * 293.82107 * 14 5 4 38 38 H 1.08992 * 109.58946 * 173.39340 * 14 5 4 39 39 H 1.09001 * 109.49793 * 185.41605 * 15 14 5 40 40 H 1.09010 * 109.52462 * 65.34091 * 15 14 5 41 41 H 0.96999 * 120.00042 * 265.00273 * 18 16 15 42 42 H 1.07994 * 119.63118 * 0.02562 * 22 21 19 43 43 H 1.08003 * 120.00374 * 180.02562 * 23 22 21 44 44 H 1.07997 * 120.89975 * 0.04292 * 25 24 23 45 45 H 1.08000 * 120.03324 * 179.97438 * 26 25 24 46 46 H 1.07999 * 119.13992 * 179.72671 * 27 26 25 47 47 H 1.07999 * 120.23498 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5045 -0.8291 1.1697 6 6 4.2935 -0.3792 2.1944 7 1 3.9502 0.4260 2.8269 8 6 5.5347 -0.9584 2.4205 9 7 5.8205 -2.1295 1.8924 10 14 6.7992 -0.0754 3.4744 11 1 6.2479 0.1348 4.8371 12 1 8.0328 -0.8977 3.5604 13 1 7.1225 1.2387 2.8630 14 6 4.1053 -1.4267 -0.0307 15 6 3.5708 -0.6951 -1.2659 16 6 2.0407 -0.7231 -1.2484 17 1 1.6966 -1.7573 -1.2350 18 7 1.5264 -0.0530 -2.4453 19 6 1.3972 -0.7387 -3.5983 20 8 1.7069 -1.9131 -3.6451 21 6 0.8774 -0.0624 -4.8064 22 6 0.5196 1.2956 -4.7450 23 6 0.0396 1.9372 -5.8416 24 6 -0.1030 1.2430 -7.0553 25 6 -0.5976 1.8844 -8.2073 26 6 -0.7122 1.1526 -9.3544 27 6 -0.3483 -0.1934 -9.3603 28 7 0.1161 -0.7859 -8.2881 29 6 0.2533 -0.1264 -7.1327 30 6 0.7467 -0.7725 -5.9872 31 1 -0.3634 -1.0276 0.0015 32 1 -0.3633 0.5152 0.8893 33 1 -0.3633 0.5126 -0.8907 34 1 1.6052 -1.7216 1.2981 35 1 1.7637 -0.1600 2.1403 36 1 6.6879 -2.5340 2.0500 37 1 3.8375 -2.4818 -0.0867 38 1 5.1895 -1.3246 0.0138 39 1 3.9333 -1.1898 -2.1670 40 1 3.9159 0.3388 -1.2547 41 1 1.2790 0.8842 -2.4079 42 1 0.6276 1.8348 -3.8155 43 1 -0.2313 2.9810 -5.7813 44 1 -0.8785 2.9270 -8.1842 45 1 -1.0885 1.6146 -10.2551 46 1 -0.4483 -0.7612 -10.2735 47 1 1.0221 -1.8159 -6.0276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943703128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:58 Heat of formation + Delta-G solvation = 15.740456 kcal Electronic energy + Delta-G solvation = -28618.743579 eV Core-core repulsion = 24765.658365 eV Total energy + Delta-G solvation = -3853.085214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.97448 -41.05307 -39.32168 -37.72187 -36.26876 -34.47714 -34.29426 -32.94850 -32.21992 -31.09348 -31.04421 -27.42422 -27.22901 -25.65573 -24.87574 -23.86036 -23.05967 -22.65507 -21.92636 -21.05174 -19.43772 -18.74255 -18.45749 -17.93177 -17.15788 -17.08622 -16.70175 -16.16197 -15.63736 -15.60452 -15.49373 -15.35249 -15.12723 -14.92661 -14.71771 -14.58155 -14.55548 -14.20273 -13.91459 -13.60386 -13.07715 -13.01113 -12.95555 -12.74327 -12.71637 -12.58891 -12.51227 -12.33630 -12.08645 -12.05961 -11.67869 -11.59807 -11.56085 -11.35015 -11.02480 -10.56855 -10.49026 -10.12650 -9.81195 -9.33845 -8.71956 -7.87625 -5.34573 -0.78351 -0.36625 0.86363 1.45310 1.47387 1.50241 1.56990 2.01279 2.26089 2.51359 3.08569 3.26010 3.29033 3.52186 3.58794 3.66464 3.74000 3.83164 3.95488 4.01833 4.04367 4.07131 4.15725 4.29564 4.36697 4.57923 4.59353 4.70648 4.71438 4.73256 4.84959 4.86559 4.87869 4.95416 5.01303 5.08677 5.10440 5.13106 5.18286 5.28699 5.31189 5.37725 5.47027 5.50846 5.53897 5.63128 5.68256 5.77957 6.37508 6.50251 6.91401 7.12215 7.15725 7.83103 8.36525 9.19331 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023919 B = 0.002203 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.323970 B =12708.996365 C =12958.983482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.099 4.099 3 H 0.085 0.915 4 C 0.149 3.851 5 N -0.609 5.609 6 C -0.261 4.261 7 H 0.075 0.925 8 C -0.056 4.056 9 N -0.939 5.939 10 Si 0.971 3.029 11 H -0.272 1.272 12 H -0.299 1.299 13 H -0.276 1.276 14 C 0.183 3.817 15 C -0.132 4.132 16 C 0.169 3.831 17 H 0.055 0.945 18 N -0.696 5.696 19 C 0.551 3.449 20 O -0.583 6.583 21 C -0.118 4.118 22 C -0.098 4.098 23 C -0.081 4.081 24 C -0.102 4.102 25 C -0.056 4.056 26 C -0.163 4.163 27 C 0.126 3.874 28 N -0.515 5.515 29 C 0.093 3.907 30 C -0.053 4.053 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.007 0.993 35 H 0.068 0.932 36 H 0.249 0.751 37 H -0.013 1.013 38 H 0.056 0.944 39 H 0.043 0.957 40 H 0.065 0.935 41 H 0.415 0.585 42 H 0.161 0.839 43 H 0.181 0.819 44 H 0.182 0.818 45 H 0.179 0.821 46 H 0.186 0.814 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.031 15.827 -21.841 32.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.119 4.119 3 H 0.103 0.897 4 C 0.023 3.977 5 N -0.331 5.331 6 C -0.391 4.391 7 H 0.093 0.907 8 C -0.251 4.251 9 N -0.585 5.585 10 Si 0.798 3.202 11 H -0.198 1.198 12 H -0.225 1.225 13 H -0.201 1.201 14 C 0.056 3.944 15 C -0.173 4.173 16 C 0.064 3.936 17 H 0.073 0.927 18 N -0.347 5.347 19 C 0.339 3.661 20 O -0.464 6.464 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.099 4.099 24 C -0.104 4.104 25 C -0.082 4.082 26 C -0.182 4.182 27 C -0.047 4.047 28 N -0.224 5.224 29 C -0.027 4.027 30 C -0.073 4.073 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.025 0.975 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.005 0.995 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.253 0.747 42 H 0.178 0.822 43 H 0.198 0.802 44 H 0.199 0.801 45 H 0.197 0.803 46 H 0.203 0.797 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.399 14.019 -21.698 31.146 hybrid contribution 1.032 0.262 0.724 1.287 sum -16.367 14.281 -20.975 30.196 Atomic orbital electron populations 1.21732 0.92645 1.01831 1.03080 1.21768 0.96902 1.00045 0.93198 0.89658 1.21098 0.83439 0.96759 0.96420 1.44336 1.01157 1.71385 1.16268 1.19531 0.98977 1.11783 1.08840 0.90718 1.25907 1.02085 0.95983 1.01091 1.70205 1.22285 1.16150 1.49880 0.85293 0.78112 0.77788 0.78970 1.19760 1.22513 1.20140 1.20454 0.97681 0.92012 0.84212 1.22334 0.95987 1.01017 0.97933 1.20721 0.92551 0.96305 0.84034 0.92677 1.45858 1.64889 1.14965 1.09003 1.18679 0.77439 0.85970 0.84002 1.90780 1.52030 1.18185 1.85368 1.19834 1.03834 0.95953 0.92659 1.21223 0.97629 0.91630 1.01112 1.21348 0.97035 1.01607 0.89911 1.19307 1.00301 0.93523 0.97262 1.22019 0.93673 1.01999 0.90484 1.22417 1.00156 0.94777 1.00881 1.23674 0.90851 0.93924 0.96269 1.68005 1.14878 1.39784 0.99739 1.18848 0.99768 0.91756 0.92309 1.21154 0.95539 0.99961 0.90693 0.93810 0.90826 0.90811 0.97468 0.91350 0.94198 0.99514 0.92555 0.93834 0.91625 0.74663 0.82187 0.80203 0.80093 0.80319 0.79713 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.03 71.98 0.65 -2.48 16 2 C -0.10 -3.04 2.46 -10.72 -0.03 -3.07 16 3 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 4 C 0.15 6.04 5.80 86.36 0.50 6.54 16 5 N -0.61 -30.92 2.99 -699.11 -2.09 -33.01 16 6 C -0.26 -14.32 9.58 84.03 0.81 -13.51 16 7 H 0.08 3.88 7.88 -2.91 -0.02 3.86 16 8 C -0.06 -3.15 4.92 84.86 0.42 -2.73 16 9 N -0.94 -57.45 11.20 21.65 0.24 -57.20 16 10 Si 0.97 45.13 29.59 68.60 2.03 47.16 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 13 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 14 C 0.18 9.46 5.30 86.36 0.46 9.91 16 15 C -0.13 -5.48 5.65 30.67 0.17 -5.31 16 16 C 0.17 5.86 1.88 45.02 0.08 5.95 16 17 H 0.05 2.28 7.57 -2.39 -0.02 2.26 16 18 N -0.70 -18.83 4.31 -445.24 -1.92 -20.75 16 19 C 0.55 17.48 7.73 86.80 0.67 18.15 16 20 O -0.58 -24.50 15.96 -3.86 -0.06 -24.56 16 21 C -0.12 -2.97 5.87 -20.11 -0.12 -3.09 16 22 C -0.10 -1.54 9.44 22.28 0.21 -1.32 16 23 C -0.08 -0.96 9.74 22.27 0.22 -0.74 16 24 C -0.10 -1.63 5.75 -21.23 -0.12 -1.76 16 25 C -0.06 -0.49 9.88 22.51 0.22 -0.27 16 26 C -0.16 -1.29 10.03 22.16 0.22 -1.06 16 27 C 0.13 1.76 11.15 85.10 0.95 2.70 16 28 N -0.52 -12.14 10.34 -188.65 -1.95 -14.09 16 29 C 0.09 2.23 6.60 40.25 0.27 2.50 16 30 C -0.05 -1.51 9.56 22.85 0.22 -1.29 16 31 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.07 1.34 7.36 -2.39 -0.02 1.32 16 34 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.07 2.62 7.93 -2.39 -0.02 2.60 16 36 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 37 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 38 H 0.06 3.26 6.06 -2.39 -0.01 3.25 16 39 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 41 H 0.41 7.73 6.29 -92.71 -0.58 7.15 16 42 H 0.16 1.49 6.34 -2.91 -0.02 1.47 16 43 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16 44 H 0.18 0.09 8.06 -2.91 -0.02 0.06 16 45 H 0.18 -0.04 8.06 -2.91 -0.02 -0.06 16 46 H 0.19 1.37 8.06 -2.91 -0.02 1.34 16 47 H 0.12 3.93 7.60 -2.91 -0.02 3.91 16 Total: -1.00 -81.54 380.65 2.45 -79.09 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.40 Total: 14.23 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 5.80 Total: 9.12 kcal Atomic # 7 Polarization: -119.33 SS G_CDS: -5.72 Total: -125.05 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.06 Total: -24.56 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -81.54 2.45 -79.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943703128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.830 kcal (2) G-P(sol) polarization free energy of solvation -81.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds