Wall clock time and date at job start Tue Mar 31 2020 22:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.49611 * 2 1 4 4 C 1.52759 * 109.56584 * 240.02660 * 2 1 3 5 5 N 1.46926 * 109.00774 * 185.55384 * 4 2 1 6 6 C 1.36943 * 120.62758 * 233.58797 * 5 4 2 7 7 H 1.08001 * 119.99843 * 152.31122 * 6 5 4 8 8 C 1.38806 * 120.00009 * 332.30151 * 6 5 4 9 9 N 1.31616 * 120.00310 * 342.50379 * 8 6 5 10 10 Si 1.86801 * 119.99895 * 162.77019 * 8 6 5 11 11 H 1.48500 * 109.47233 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47043 * 120.00541 * 10 8 6 13 13 H 1.48499 * 109.47564 * 240.00214 * 10 8 6 14 14 C 1.46923 * 118.74121 * 53.30670 * 5 4 2 15 15 C 1.53185 * 108.77652 * 306.64678 * 14 5 4 16 16 C 1.53041 * 109.31552 * 54.63248 * 15 14 5 17 17 H 1.09000 * 109.45777 * 178.62807 * 16 15 14 18 18 N 1.46496 * 109.45814 * 58.65492 * 16 15 14 19 19 C 1.34774 * 120.00093 * 85.00446 * 18 16 15 20 20 O 1.21543 * 120.00118 * 359.97438 * 19 18 16 21 21 C 1.47885 * 120.00079 * 179.97438 * 19 18 16 22 22 C 1.40572 * 119.70487 * 359.72298 * 21 19 18 23 23 C 1.35819 * 120.73639 * 179.73281 * 22 21 19 24 24 C 1.40554 * 119.97407 * 0.56037 * 23 22 21 25 25 C 1.40826 * 121.12157 * 179.71961 * 24 23 22 26 26 C 1.36549 * 118.19881 * 179.97438 * 25 24 23 27 27 C 1.39421 * 119.93410 * 0.02562 * 26 25 24 28 28 N 1.31020 * 121.71768 * 359.97438 * 27 26 25 29 29 C 1.33745 * 121.34978 * 0.03586 * 28 27 26 30 30 C 1.38405 * 119.70612 * 179.97438 * 21 19 18 31 31 H 1.09003 * 109.47124 * 299.93977 * 1 2 3 32 32 H 1.08997 * 109.47281 * 59.93960 * 1 2 3 33 33 H 1.08997 * 109.46847 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.50461 * 65.67355 * 4 2 1 35 35 H 1.08998 * 109.43426 * 305.38910 * 4 2 1 36 36 H 0.96994 * 120.00524 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.58544 * 66.43706 * 14 5 4 38 38 H 1.09000 * 109.58920 * 186.85226 * 14 5 4 39 39 H 1.09001 * 109.49683 * 174.58184 * 15 14 5 40 40 H 1.09003 * 109.49731 * 294.64570 * 15 14 5 41 41 H 0.97004 * 119.99762 * 265.00151 * 18 16 15 42 42 H 1.07997 * 119.63182 * 359.97438 * 22 21 19 43 43 H 1.07998 * 120.01086 * 180.23525 * 23 22 21 44 44 H 1.08000 * 120.90099 * 359.95610 * 25 24 23 45 45 H 1.08001 * 120.03319 * 179.97438 * 26 25 24 46 46 H 1.07998 * 119.14168 * 179.97438 * 27 26 25 47 47 H 1.07994 * 120.23532 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7191 -1.2469 5 7 3.5046 -0.8295 -1.1692 6 6 4.2936 -0.3791 -2.1939 7 1 5.3003 -0.0434 -1.9928 8 6 3.7997 -0.3542 -3.4908 9 7 2.7352 -1.0624 -3.8034 10 14 4.6502 0.6786 -4.7945 11 1 5.8192 1.3697 -4.1937 12 1 5.1095 -0.2000 -5.9001 13 1 3.6982 1.6866 -5.3263 14 6 4.1053 -1.4266 0.0313 15 6 3.5708 -0.6946 1.2663 16 6 2.0408 -0.7226 1.2486 17 1 1.6582 -0.2235 2.1389 18 7 1.5784 -2.1126 1.2316 19 6 1.4489 -2.7940 2.3871 20 8 1.7162 -2.2554 3.4434 21 6 0.9816 -4.1969 2.3699 22 6 0.6685 -4.8119 1.1452 23 6 0.2427 -6.1010 1.1046 24 6 0.0997 -6.8312 2.2970 25 6 -0.3456 -8.1671 2.2835 26 6 -0.4624 -8.8205 3.4768 27 6 -0.1444 -8.1626 4.6642 28 7 0.2696 -6.9195 4.6734 29 6 0.4056 -6.2230 3.5398 30 6 0.8513 -4.8911 3.5602 31 1 -0.3633 0.5129 0.8905 32 1 -0.3634 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7646 -0.1502 -2.1344 35 1 1.6021 -1.7153 -1.2969 36 1 2.3898 -1.0447 -4.7096 37 1 3.8376 -2.4818 0.0876 38 1 5.1896 -1.3246 -0.0132 39 1 3.9334 -1.1890 2.1675 40 1 3.9164 0.3392 1.2543 41 1 1.3653 -2.5425 0.3885 42 1 0.7715 -4.2544 0.2261 43 1 0.0090 -6.5630 0.1569 44 1 -0.5884 -8.6615 1.3545 45 1 -0.8016 -9.8456 3.5010 46 1 -0.2418 -8.6914 5.6008 47 1 1.0891 -4.4116 4.4982 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943703129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:03 Heat of formation + Delta-G solvation = 38.034889 kcal Electronic energy + Delta-G solvation = -29282.036748 eV Core-core repulsion = 25429.918293 eV Total energy + Delta-G solvation = -3852.118455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.10449 -39.90311 -37.89885 -36.72708 -34.29401 -33.70775 -32.41478 -31.88125 -30.84767 -30.20451 -29.43786 -26.05622 -25.57616 -24.65727 -24.08547 -22.51160 -22.04918 -21.21003 -20.81975 -18.72811 -18.55756 -17.64708 -17.08318 -16.75448 -16.24210 -15.36268 -14.99607 -14.88441 -14.68430 -14.49629 -14.31057 -13.89538 -13.84865 -13.73338 -13.63167 -13.32476 -13.25079 -13.06571 -12.64655 -12.08809 -12.05105 -11.85200 -11.73765 -11.47803 -11.24802 -11.06266 -10.96680 -10.80101 -10.75163 -10.38741 -10.17097 -9.98763 -9.87167 -9.77969 -9.68894 -9.45781 -9.05619 -8.68263 -8.52833 -8.46307 -6.73285 -5.85427 -3.26596 0.05306 0.42801 1.67663 2.36081 3.30453 3.33286 3.35185 3.42162 3.44230 3.94285 4.06081 4.31552 4.44259 4.45289 4.59401 4.69811 4.77495 4.92671 4.99868 5.21374 5.26173 5.27705 5.40515 5.52321 5.54180 5.61811 5.66483 5.68433 5.81226 5.83365 6.04943 6.06654 6.12221 6.14333 6.18343 6.24794 6.31679 6.43374 6.51000 6.52405 6.54334 6.62938 6.76291 6.89845 6.97836 7.23884 7.53228 7.63196 7.74653 7.79511 8.38508 8.41422 9.15137 9.78419 10.34493 11.23145 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017255 B = 0.002746 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.281963 B =10192.381065 C =10945.333849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 H 0.079 0.921 4 C 0.178 3.822 5 N -0.592 5.592 6 C -0.250 4.250 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.903 5.903 10 Si 0.901 3.099 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.289 1.289 14 C 0.148 3.852 15 C -0.146 4.146 16 C 0.160 3.840 17 H 0.075 0.925 18 N -0.703 5.703 19 C 0.554 3.446 20 O -0.542 6.542 21 C -0.109 4.109 22 C -0.086 4.086 23 C -0.100 4.100 24 C -0.088 4.088 25 C -0.060 4.060 26 C -0.172 4.172 27 C 0.127 3.873 28 N -0.466 5.466 29 C 0.116 3.884 30 C -0.028 4.028 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.013 0.987 36 H 0.253 0.747 37 H 0.017 0.983 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.403 0.597 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.160 0.840 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.981 -12.619 11.224 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 H 0.098 0.902 4 C 0.052 3.948 5 N -0.314 5.314 6 C -0.379 4.379 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.548 5.548 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.218 1.218 13 H -0.216 1.216 14 C 0.021 3.979 15 C -0.186 4.186 16 C 0.056 3.944 17 H 0.093 0.907 18 N -0.355 5.355 19 C 0.340 3.660 20 O -0.421 6.421 21 C -0.114 4.114 22 C -0.105 4.105 23 C -0.119 4.119 24 C -0.090 4.090 25 C -0.086 4.086 26 C -0.192 4.192 27 C -0.047 4.047 28 N -0.174 5.174 29 C -0.005 4.005 30 C -0.047 4.047 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.031 0.969 36 H 0.063 0.937 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.241 0.759 42 H 0.153 0.847 43 H 0.155 0.845 44 H 0.159 0.841 45 H 0.156 0.844 46 H 0.177 0.823 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.587 -11.688 12.517 19.158 hybrid contribution 0.071 -0.256 -2.023 2.040 sum -8.516 -11.944 10.495 18.037 Atomic orbital electron populations 1.21724 0.95801 1.01216 1.00971 1.22069 0.94803 1.00876 0.97134 0.90245 1.20698 0.83239 0.96507 0.94360 1.44058 1.01618 1.69539 1.16213 1.19232 0.97574 1.35300 0.85823 0.91626 1.24997 0.98539 0.99151 0.96920 1.70019 1.25657 1.40344 1.18759 0.86248 0.78961 0.80019 0.81694 1.20277 1.21778 1.21565 1.20863 0.96577 0.94090 0.86348 1.22390 0.94976 1.01816 0.99456 1.20942 0.94403 0.80361 0.98713 0.90683 1.46104 1.66316 1.14426 1.08604 1.18130 0.78028 0.85451 0.84343 1.90749 1.51019 1.69708 1.30649 1.20040 1.02710 0.94909 0.93780 1.21098 0.96742 0.95290 0.97361 1.20901 0.99641 0.94219 0.97133 1.18972 1.00386 0.95104 0.94556 1.21534 0.95049 0.92830 0.99159 1.21947 1.01989 1.01741 0.93504 1.22995 0.93033 0.90362 0.98316 1.68026 1.12248 1.08076 1.29052 1.18762 0.99025 0.94406 0.88283 1.21217 0.93695 0.91051 0.98761 0.93601 0.92541 0.93241 0.89042 0.96882 0.93718 0.96536 0.92869 0.92459 0.91311 0.75941 0.84688 0.84490 0.84143 0.84412 0.82284 0.83239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.05 37.16 0.34 -1.76 16 2 C -0.13 -2.25 2.66 -90.72 -0.24 -2.49 16 3 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 4 C 0.18 3.84 4.27 -3.93 -0.02 3.82 16 5 N -0.59 -13.96 3.00 -172.59 -0.52 -14.48 16 6 C -0.25 -6.59 9.59 -15.06 -0.14 -6.73 16 7 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 8 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 9 N -0.90 -24.82 11.20 55.49 0.62 -24.20 16 10 Si 0.90 21.09 29.59 -169.99 -5.03 16.06 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.15 3.03 6.26 -3.72 -0.02 3.01 16 15 C -0.15 -2.64 5.77 -26.61 -0.15 -2.79 16 16 C 0.16 2.72 2.21 -67.89 -0.15 2.57 16 17 H 0.08 1.30 7.58 -51.93 -0.39 0.90 16 18 N -0.70 -11.15 3.55 -54.70 -0.19 -11.34 16 19 C 0.55 9.02 7.73 -12.31 -0.10 8.92 16 20 O -0.54 -10.32 15.96 5.33 0.09 -10.23 16 21 C -0.11 -1.54 5.87 -105.01 -0.62 -2.15 16 22 C -0.09 -1.04 9.44 -39.57 -0.37 -1.41 16 23 C -0.10 -1.05 9.74 -39.58 -0.39 -1.43 16 24 C -0.09 -0.97 5.75 -106.72 -0.61 -1.59 16 25 C -0.06 -0.49 9.88 -39.21 -0.39 -0.88 16 26 C -0.17 -1.23 10.03 -39.75 -0.40 -1.63 16 27 C 0.13 1.11 11.15 -17.46 -0.19 0.92 16 28 N -0.47 -5.77 10.34 -10.98 -0.11 -5.88 16 29 C 0.12 1.51 6.60 -84.87 -0.56 0.95 16 30 C -0.03 -0.39 9.56 -38.68 -0.37 -0.76 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.71 7.54 -51.93 -0.39 0.32 16 34 H 0.09 2.27 6.04 -51.93 -0.31 1.95 16 35 H 0.01 0.29 6.64 -51.93 -0.34 -0.06 16 36 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 37 H 0.02 0.35 7.74 -51.93 -0.40 -0.06 16 38 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.40 6.19 4.72 -40.82 -0.19 6.00 16 42 H 0.14 1.52 6.34 -52.49 -0.33 1.19 16 43 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 45 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 46 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 47 H 0.15 2.17 7.60 -52.49 -0.40 1.77 16 LS Contribution 376.68 15.07 5.68 5.68 Total: -1.00 -31.24 376.68 -10.48 -41.72 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.54 Total: 6.15 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -4.47 Total: -3.47 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.20 Total: -55.90 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.24 -10.48 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943703129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.752 kcal (2) G-P(sol) polarization free energy of solvation -31.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds