Wall clock time and date at job start Tue Mar 31 2020 22:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.49611 * 2 1 4 4 C 1.52759 * 109.56584 * 240.02660 * 2 1 3 5 5 N 1.46926 * 109.00774 * 185.55384 * 4 2 1 6 6 C 1.36943 * 120.62758 * 233.58797 * 5 4 2 7 7 H 1.08001 * 119.99843 * 152.31122 * 6 5 4 8 8 C 1.38806 * 120.00009 * 332.30151 * 6 5 4 9 9 N 1.31616 * 120.00310 * 342.50379 * 8 6 5 10 10 Si 1.86801 * 119.99895 * 162.77019 * 8 6 5 11 11 H 1.48500 * 109.47233 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47043 * 120.00541 * 10 8 6 13 13 H 1.48499 * 109.47564 * 240.00214 * 10 8 6 14 14 C 1.46923 * 118.74121 * 53.30670 * 5 4 2 15 15 C 1.53185 * 108.77652 * 306.64678 * 14 5 4 16 16 C 1.53041 * 109.31552 * 54.63248 * 15 14 5 17 17 H 1.09000 * 109.45777 * 178.62807 * 16 15 14 18 18 N 1.46496 * 109.45814 * 58.65492 * 16 15 14 19 19 C 1.34774 * 120.00093 * 85.00446 * 18 16 15 20 20 O 1.21543 * 120.00118 * 359.97438 * 19 18 16 21 21 C 1.47885 * 120.00079 * 179.97438 * 19 18 16 22 22 C 1.40572 * 119.70487 * 359.72298 * 21 19 18 23 23 C 1.35819 * 120.73639 * 179.73281 * 22 21 19 24 24 C 1.40554 * 119.97407 * 0.56037 * 23 22 21 25 25 C 1.40826 * 121.12157 * 179.71961 * 24 23 22 26 26 C 1.36549 * 118.19881 * 179.97438 * 25 24 23 27 27 C 1.39421 * 119.93410 * 0.02562 * 26 25 24 28 28 N 1.31020 * 121.71768 * 359.97438 * 27 26 25 29 29 C 1.33745 * 121.34978 * 0.03586 * 28 27 26 30 30 C 1.38405 * 119.70612 * 179.97438 * 21 19 18 31 31 H 1.09003 * 109.47124 * 299.93977 * 1 2 3 32 32 H 1.08997 * 109.47281 * 59.93960 * 1 2 3 33 33 H 1.08997 * 109.46847 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.50461 * 65.67355 * 4 2 1 35 35 H 1.08998 * 109.43426 * 305.38910 * 4 2 1 36 36 H 0.96994 * 120.00524 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.58544 * 66.43706 * 14 5 4 38 38 H 1.09000 * 109.58920 * 186.85226 * 14 5 4 39 39 H 1.09001 * 109.49683 * 174.58184 * 15 14 5 40 40 H 1.09003 * 109.49731 * 294.64570 * 15 14 5 41 41 H 0.97004 * 119.99762 * 265.00151 * 18 16 15 42 42 H 1.07997 * 119.63182 * 359.97438 * 22 21 19 43 43 H 1.07998 * 120.01086 * 180.23525 * 23 22 21 44 44 H 1.08000 * 120.90099 * 359.95610 * 25 24 23 45 45 H 1.08001 * 120.03319 * 179.97438 * 26 25 24 46 46 H 1.07998 * 119.14168 * 179.97438 * 27 26 25 47 47 H 1.07994 * 120.23532 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7191 -1.2469 5 7 3.5046 -0.8295 -1.1692 6 6 4.2936 -0.3791 -2.1939 7 1 5.3003 -0.0434 -1.9928 8 6 3.7997 -0.3542 -3.4908 9 7 2.7352 -1.0624 -3.8034 10 14 4.6502 0.6786 -4.7945 11 1 5.8192 1.3697 -4.1937 12 1 5.1095 -0.2000 -5.9001 13 1 3.6982 1.6866 -5.3263 14 6 4.1053 -1.4266 0.0313 15 6 3.5708 -0.6946 1.2663 16 6 2.0408 -0.7226 1.2486 17 1 1.6582 -0.2235 2.1389 18 7 1.5784 -2.1126 1.2316 19 6 1.4489 -2.7940 2.3871 20 8 1.7162 -2.2554 3.4434 21 6 0.9816 -4.1969 2.3699 22 6 0.6685 -4.8119 1.1452 23 6 0.2427 -6.1010 1.1046 24 6 0.0997 -6.8312 2.2970 25 6 -0.3456 -8.1671 2.2835 26 6 -0.4624 -8.8205 3.4768 27 6 -0.1444 -8.1626 4.6642 28 7 0.2696 -6.9195 4.6734 29 6 0.4056 -6.2230 3.5398 30 6 0.8513 -4.8911 3.5602 31 1 -0.3633 0.5129 0.8905 32 1 -0.3634 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7646 -0.1502 -2.1344 35 1 1.6021 -1.7153 -1.2969 36 1 2.3898 -1.0447 -4.7096 37 1 3.8376 -2.4818 0.0876 38 1 5.1896 -1.3246 -0.0132 39 1 3.9334 -1.1890 2.1675 40 1 3.9164 0.3392 1.2543 41 1 1.3653 -2.5425 0.3885 42 1 0.7715 -4.2544 0.2261 43 1 0.0090 -6.5630 0.1569 44 1 -0.5884 -8.6615 1.3545 45 1 -0.8016 -9.8456 3.5010 46 1 -0.2418 -8.6914 5.6008 47 1 1.0891 -4.4116 4.4982 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943703129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:02 Heat of formation + Delta-G solvation = 20.635337 kcal Electronic energy + Delta-G solvation = -29282.791249 eV Core-core repulsion = 25429.918293 eV Total energy + Delta-G solvation = -3852.872956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.99654 -41.15200 -39.31037 -37.71322 -35.97697 -34.48064 -33.86501 -33.54789 -31.99154 -31.05231 -30.93328 -27.54063 -27.22074 -25.80725 -24.88165 -23.89592 -23.14891 -22.67240 -22.11798 -20.18889 -19.66698 -18.78251 -18.43640 -17.79440 -17.24949 -16.83072 -16.60209 -16.25871 -15.72457 -15.52289 -15.49380 -15.25061 -15.18990 -14.93186 -14.72546 -14.64935 -14.57701 -14.22607 -13.92177 -13.60381 -13.08848 -12.95823 -12.93599 -12.80643 -12.73316 -12.59231 -12.51469 -12.47664 -12.15393 -11.79725 -11.70556 -11.56603 -11.48919 -11.16088 -11.05191 -10.54060 -10.50177 -10.10265 -9.81325 -9.34863 -8.65789 -7.86416 -5.29738 -0.78636 -0.37862 0.86036 1.44381 1.46592 1.50207 1.59121 2.09050 2.27039 2.52235 3.08022 3.26263 3.28403 3.52063 3.60685 3.67970 3.81311 3.83397 3.92787 4.02876 4.04142 4.06315 4.17615 4.28334 4.33645 4.56587 4.57686 4.66091 4.72774 4.73509 4.82320 4.86539 4.93214 4.96126 5.02237 5.08026 5.08459 5.13841 5.16404 5.29281 5.31590 5.34213 5.47275 5.52036 5.57970 5.66944 5.76432 5.76824 6.40856 6.49143 6.89955 7.12304 7.17236 7.86510 8.38110 9.19511 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017255 B = 0.002746 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.281963 B =10192.381065 C =10945.333849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 H 0.073 0.927 4 C 0.188 3.812 5 N -0.607 5.607 6 C -0.262 4.262 7 H 0.060 0.940 8 C -0.043 4.043 9 N -0.926 5.926 10 Si 0.960 3.040 11 H -0.273 1.273 12 H -0.293 1.293 13 H -0.289 1.289 14 C 0.150 3.850 15 C -0.136 4.136 16 C 0.166 3.834 17 H 0.079 0.921 18 N -0.697 5.697 19 C 0.556 3.444 20 O -0.576 6.576 21 C -0.121 4.121 22 C -0.103 4.103 23 C -0.085 4.085 24 C -0.100 4.100 25 C -0.060 4.060 26 C -0.160 4.160 27 C 0.128 3.872 28 N -0.508 5.508 29 C 0.095 3.905 30 C -0.044 4.044 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.009 0.991 36 H 0.250 0.750 37 H 0.015 0.985 38 H 0.047 0.953 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.406 0.594 42 H 0.139 0.861 43 H 0.170 0.830 44 H 0.176 0.824 45 H 0.180 0.820 46 H 0.191 0.809 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.240 -14.919 11.102 21.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.136 4.136 3 H 0.091 0.909 4 C 0.062 3.938 5 N -0.330 5.330 6 C -0.392 4.392 7 H 0.078 0.922 8 C -0.239 4.239 9 N -0.572 5.572 10 Si 0.789 3.211 11 H -0.197 1.197 12 H -0.220 1.220 13 H -0.216 1.216 14 C 0.024 3.976 15 C -0.176 4.176 16 C 0.061 3.939 17 H 0.097 0.903 18 N -0.349 5.349 19 C 0.344 3.656 20 O -0.457 6.457 21 C -0.126 4.126 22 C -0.121 4.121 23 C -0.103 4.103 24 C -0.103 4.103 25 C -0.085 4.085 26 C -0.179 4.179 27 C -0.045 4.045 28 N -0.217 5.217 29 C -0.025 4.025 30 C -0.064 4.064 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.027 0.973 36 H 0.060 0.940 37 H 0.033 0.967 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.244 0.756 42 H 0.157 0.843 43 H 0.188 0.812 44 H 0.194 0.806 45 H 0.198 0.802 46 H 0.208 0.792 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.848 -13.990 12.403 21.131 hybrid contribution 0.437 0.247 -1.886 1.951 sum -9.410 -13.743 10.517 19.698 Atomic orbital electron populations 1.21668 0.93552 1.01971 1.01872 1.21876 0.96594 0.99877 0.95277 0.90853 1.20531 0.82341 0.96111 0.94817 1.44266 1.02332 1.69944 1.16427 1.19456 0.97798 1.35165 0.86798 0.92187 1.25628 0.99436 1.00252 0.98544 1.70134 1.26753 1.41401 1.18876 0.85324 0.78095 0.78447 0.79235 1.19722 1.22029 1.21574 1.20884 0.96266 0.94126 0.86314 1.22259 0.95751 1.01480 0.98094 1.20814 0.93605 0.81080 0.98392 0.90338 1.46009 1.66132 1.13944 1.08768 1.18477 0.77167 0.86276 0.83687 1.90719 1.52605 1.70678 1.31700 1.19851 1.04215 0.93664 0.94826 1.21127 0.98174 0.96325 0.96471 1.21264 0.97407 0.93324 0.98343 1.19256 1.00543 0.96684 0.93792 1.21986 0.93899 0.91429 1.01213 1.22418 0.99917 1.03316 0.92283 1.23713 0.90844 0.89327 1.00638 1.68020 1.14453 1.09964 1.29262 1.18834 0.99879 0.94137 0.89666 1.21137 0.95046 0.92201 0.97995 0.91894 0.92409 0.92600 0.92257 0.97337 0.94028 0.96709 0.93419 0.92209 0.91162 0.75552 0.84318 0.81245 0.80640 0.80216 0.79244 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.87 9.05 71.98 0.65 -3.22 16 2 C -0.12 -4.06 2.66 -10.86 -0.03 -4.08 16 3 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 4 C 0.19 8.21 4.27 86.22 0.37 8.58 16 5 N -0.61 -29.05 3.00 -699.95 -2.10 -31.15 16 6 C -0.26 -14.00 9.59 84.03 0.81 -13.19 16 7 H 0.06 3.21 7.88 -2.91 -0.02 3.18 16 8 C -0.04 -2.29 4.91 84.86 0.42 -1.87 16 9 N -0.93 -51.53 11.20 21.65 0.24 -51.29 16 10 Si 0.96 43.71 29.59 68.60 2.03 45.74 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 12 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 13 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 14 C 0.15 6.24 6.26 86.36 0.54 6.78 16 15 C -0.14 -4.92 5.77 30.67 0.18 -4.75 16 16 C 0.17 5.63 2.21 45.02 0.10 5.73 16 17 H 0.08 2.68 7.58 -2.39 -0.02 2.66 16 18 N -0.70 -22.34 3.55 -445.25 -1.58 -23.92 16 19 C 0.56 18.65 7.73 86.80 0.67 19.32 16 20 O -0.58 -22.74 15.96 -3.85 -0.06 -22.81 16 21 C -0.12 -3.51 5.87 -20.11 -0.12 -3.63 16 22 C -0.10 -2.43 9.44 22.28 0.21 -2.22 16 23 C -0.09 -1.61 9.74 22.27 0.22 -1.40 16 24 C -0.10 -2.04 5.75 -21.23 -0.12 -2.16 16 25 C -0.06 -0.74 9.88 22.51 0.22 -0.52 16 26 C -0.16 -1.61 10.03 22.16 0.22 -1.38 16 27 C 0.13 1.91 11.15 85.10 0.95 2.86 16 28 N -0.51 -12.33 10.34 -188.66 -1.95 -14.28 16 29 C 0.09 2.46 6.60 40.25 0.27 2.73 16 30 C -0.04 -1.30 9.56 22.85 0.22 -1.08 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.05 1.55 7.54 -2.39 -0.02 1.54 16 34 H 0.06 3.00 6.04 -2.39 -0.01 2.99 16 35 H 0.01 0.38 6.64 -2.39 -0.02 0.37 16 36 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16 37 H 0.01 0.63 7.74 -2.38 -0.02 0.61 16 38 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 39 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 40 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.41 12.57 4.72 -92.71 -0.44 12.14 16 42 H 0.14 3.08 6.34 -2.91 -0.02 3.07 16 43 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 44 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 45 H 0.18 0.31 8.06 -2.91 -0.02 0.29 16 46 H 0.19 1.45 8.06 -2.91 -0.02 1.42 16 47 H 0.13 4.18 7.60 -2.91 -0.02 4.16 16 Total: -1.00 -69.90 376.68 2.90 -67.00 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.55 Total: 24.22 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 5.77 Total: 6.48 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -5.39 Total: -120.64 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.06 Total: -22.81 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -69.90 2.90 -67.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943703129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.634 kcal (2) G-P(sol) polarization free energy of solvation -69.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds