Wall clock time and date at job start Tue Mar 31 2020 22:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.50040 * 2 1 4 4 C 1.52764 * 109.56728 * 240.02920 * 2 1 3 5 5 N 1.46927 * 109.00753 * 185.55663 * 4 2 1 6 6 C 1.36939 * 120.62681 * 233.57863 * 5 4 2 7 7 H 1.07995 * 119.99655 * 148.72190 * 6 5 4 8 8 C 1.38807 * 120.00200 * 328.73211 * 6 5 4 9 9 N 1.31627 * 120.00026 * 349.88105 * 8 6 5 10 10 Si 1.86806 * 120.00392 * 170.16179 * 8 6 5 11 11 H 1.48509 * 109.46753 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47190 * 119.99365 * 10 8 6 13 13 H 1.48499 * 109.46942 * 240.00122 * 10 8 6 14 14 C 1.46917 * 118.73985 * 53.30964 * 5 4 2 15 15 C 1.53193 * 108.77819 * 306.64126 * 14 5 4 16 16 C 1.53037 * 109.31019 * 54.63412 * 15 14 5 17 17 H 1.08999 * 109.45887 * 58.64494 * 16 15 14 18 18 N 1.46496 * 109.46259 * 178.61485 * 16 15 14 19 19 C 1.34776 * 120.00256 * 275.00780 * 18 16 15 20 20 O 1.21593 * 119.99970 * 359.97438 * 19 18 16 21 21 C 1.47569 * 120.00210 * 179.97438 * 19 18 16 22 22 C 1.38703 * 120.43212 * 5.81550 * 21 19 18 23 23 C 1.39002 * 120.75017 * 179.97438 * 22 21 19 24 24 C 1.36339 * 121.18943 * 0.02562 * 23 22 21 25 25 C 1.40353 * 119.93358 * 359.97438 * 24 23 22 26 26 C 1.40685 * 122.10309 * 179.97438 * 25 24 23 27 27 C 1.36266 * 118.66176 * 180.02562 * 26 25 24 28 28 N 1.32508 * 121.84282 * 359.97438 * 27 26 25 29 29 C 1.31313 * 122.72070 * 0.02861 * 28 27 26 30 30 C 1.40132 * 119.91865 * 359.73958 * 29 28 27 31 31 H 1.08999 * 109.47636 * 299.93432 * 1 2 3 32 32 H 1.09004 * 109.46709 * 59.93809 * 1 2 3 33 33 H 1.08999 * 109.47234 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.50671 * 65.67136 * 4 2 1 35 35 H 1.09004 * 109.42712 * 305.39091 * 4 2 1 36 36 H 0.96999 * 119.99725 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.58949 * 66.43220 * 14 5 4 38 38 H 1.08998 * 109.58554 * 186.71290 * 14 5 4 39 39 H 1.09000 * 109.49996 * 174.58623 * 15 14 5 40 40 H 1.08999 * 109.49524 * 294.65182 * 15 14 5 41 41 H 0.97000 * 120.00170 * 94.99687 * 18 16 15 42 42 H 1.08000 * 119.62331 * 359.95043 * 22 21 19 43 43 H 1.08001 * 119.40426 * 180.02562 * 23 22 21 44 44 H 1.08008 * 120.03186 * 179.97438 * 24 23 22 45 45 H 1.07994 * 120.67171 * 359.97438 * 26 25 24 46 46 H 1.07999 * 119.07410 * 179.97438 * 27 26 25 47 47 H 1.07995 * 120.03739 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7191 -1.2469 5 7 3.5046 -0.8295 -1.1692 6 6 4.2937 -0.3792 -2.1939 7 1 5.2790 0.0105 -1.9854 8 6 3.8269 -0.4236 -3.5004 9 7 2.7182 -1.0750 -3.7814 10 14 4.7764 0.4346 -4.8611 11 1 5.9822 1.0855 -4.2887 12 1 5.1888 -0.5623 -5.8816 13 1 3.9127 1.4632 -5.4945 14 6 4.1052 -1.4267 0.0313 15 6 3.5708 -0.6947 1.2663 16 6 2.0408 -0.7227 1.2486 17 1 1.6967 -1.7569 1.2356 18 7 1.5264 -0.0523 2.4453 19 6 1.3970 -0.7375 3.5986 20 8 1.7069 -1.9124 3.6457 21 6 0.8794 -0.0621 4.8042 22 6 0.4109 1.2415 4.7326 23 6 -0.0786 1.8839 5.8639 24 6 -0.1127 1.2557 7.0734 25 6 0.3516 -0.0637 7.1907 26 6 0.3380 -0.7550 8.4159 27 6 0.8063 -2.0342 8.4498 28 7 1.2699 -2.6379 7.3652 29 6 1.3119 -2.0529 6.1903 30 6 0.8490 -0.7380 6.0473 31 1 -0.3634 0.5128 0.8905 32 1 -0.3633 0.5148 -0.8895 33 1 -0.3634 -1.0276 -0.0005 34 1 1.7647 -0.1502 -2.1345 35 1 1.6020 -1.7153 -1.2970 36 1 2.3923 -1.1063 -4.6944 37 1 3.8375 -2.4818 0.0875 38 1 5.1896 -1.3269 -0.0144 39 1 3.9333 -1.1891 2.1675 40 1 3.9164 0.3390 1.2544 41 1 1.2790 0.8849 2.4076 42 1 0.4270 1.7634 3.7872 43 1 -0.4383 2.8991 5.7833 44 1 -0.4966 1.7727 7.9405 45 1 -0.0353 -0.2811 9.3117 46 1 0.7993 -2.5709 9.3870 47 1 1.6984 -2.5861 5.3344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943815557.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:15 Heat of formation + Delta-G solvation = 40.896407 kcal Electronic energy + Delta-G solvation = -29126.651557 eV Core-core repulsion = 25274.657187 eV Total energy + Delta-G solvation = -3851.994370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.29566 -39.70716 -37.80671 -37.34535 -34.66383 -33.25049 -32.41399 -31.86951 -31.43971 -30.20263 -29.10951 -25.99974 -25.49894 -24.61856 -23.74175 -23.43786 -22.01994 -20.93119 -20.56014 -19.40138 -18.13314 -17.95516 -16.96675 -16.82656 -16.27186 -15.88331 -15.24861 -15.08415 -14.92054 -14.67652 -14.20394 -13.94715 -13.85613 -13.70411 -13.50913 -13.17054 -12.95915 -12.90835 -12.54238 -12.36394 -12.33254 -12.09587 -11.85541 -11.49948 -11.34509 -11.04337 -10.78132 -10.70063 -10.44533 -10.35323 -10.20017 -10.02611 -9.94900 -9.76910 -9.57869 -9.44579 -9.41908 -8.83749 -8.51084 -8.34729 -6.65554 -5.81204 -3.28996 -0.15813 0.60079 1.40128 2.50810 3.10801 3.15972 3.34676 3.42547 3.44372 3.88454 4.22038 4.28335 4.39488 4.46123 4.49066 4.60358 4.64655 4.78386 5.00092 5.15128 5.28696 5.32916 5.42069 5.43046 5.44025 5.53714 5.63791 5.64685 5.78126 5.83427 5.85303 6.00641 6.04708 6.09278 6.19583 6.31515 6.33703 6.41051 6.47189 6.54377 6.59392 6.66319 6.77371 6.88825 6.97693 7.32823 7.52205 7.67058 7.77236 7.84907 8.21656 8.45089 9.19748 9.80832 10.38825 11.27094 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024596 B = 0.002451 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.128735 B =11421.096370 C =11925.355528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 H 0.067 0.933 4 C 0.181 3.819 5 N -0.593 5.593 6 C -0.251 4.251 7 H 0.065 0.935 8 C 0.004 3.996 9 N -0.905 5.905 10 Si 0.904 3.096 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.289 1.289 14 C 0.147 3.853 15 C -0.141 4.141 16 C 0.155 3.845 17 H 0.086 0.914 18 N -0.709 5.709 19 C 0.555 3.445 20 O -0.532 6.532 21 C -0.094 4.094 22 C -0.082 4.082 23 C -0.106 4.106 24 C -0.091 4.091 25 C -0.030 4.030 26 C -0.166 4.166 27 C 0.078 3.922 28 N -0.490 5.490 29 C 0.148 3.852 30 C -0.081 4.081 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.021 0.979 36 H 0.254 0.746 37 H 0.021 0.979 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.396 0.604 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.137 0.863 46 H 0.152 0.848 47 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.333 7.077 21.782 24.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 H 0.085 0.915 4 C 0.054 3.946 5 N -0.316 5.316 6 C -0.381 4.381 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.549 5.549 10 Si 0.734 3.266 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.216 1.216 14 C 0.020 3.980 15 C -0.181 4.181 16 C 0.053 3.947 17 H 0.104 0.896 18 N -0.358 5.358 19 C 0.342 3.658 20 O -0.411 6.411 21 C -0.099 4.099 22 C -0.101 4.101 23 C -0.125 4.125 24 C -0.109 4.109 25 C -0.035 4.035 26 C -0.186 4.186 27 C -0.065 4.065 28 N -0.199 5.199 29 C -0.022 4.022 30 C -0.083 4.083 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.231 0.769 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.152 0.848 45 H 0.155 0.845 46 H 0.169 0.831 47 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -7.882 5.340 21.827 23.813 hybrid contribution -0.117 1.951 -0.692 2.073 sum -7.999 7.291 21.135 23.745 Atomic orbital electron populations 1.21734 0.95862 1.01581 1.00558 1.22124 0.94724 1.00657 0.96862 0.91468 1.20747 0.83128 0.97175 0.93509 1.44056 1.01732 1.69343 1.16441 1.19222 0.99316 1.34270 0.85301 0.91723 1.25168 0.98019 0.98934 0.97371 1.69971 1.23001 1.43248 1.18702 0.86194 0.79371 0.78891 0.82140 1.20260 1.21612 1.21607 1.20883 0.96716 0.94336 0.86020 1.22401 0.94556 1.01422 0.99703 1.21169 0.93997 0.97362 0.82219 0.89595 1.46259 1.64896 1.14302 1.10360 1.18067 0.78277 0.86457 0.82963 1.90576 1.50921 1.15798 1.83808 1.20038 1.01797 0.94734 0.93340 1.21462 0.96009 0.93387 0.99283 1.20910 0.98828 1.00483 0.92262 1.21148 0.98153 0.93217 0.98378 1.18171 0.97626 0.94518 0.93211 1.21861 1.02933 0.96507 0.97287 1.22340 0.94510 0.92460 0.97204 1.67697 1.14784 1.38114 0.99258 1.24687 0.90768 0.90748 0.95955 1.18882 1.00605 0.96334 0.92525 0.94029 0.92497 0.92904 0.88735 0.96125 0.93609 0.96075 0.92512 0.92522 0.92308 0.76936 0.84896 0.84780 0.84773 0.84487 0.83102 0.78207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.03 37.16 0.34 -1.71 16 2 C -0.12 -2.12 2.44 -90.72 -0.22 -2.34 16 3 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 4 C 0.18 4.10 4.51 -3.93 -0.02 4.08 16 5 N -0.59 -14.45 2.99 -172.59 -0.52 -14.97 16 6 C -0.25 -6.73 9.59 -15.06 -0.14 -6.87 16 7 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 8 C 0.00 0.10 5.06 -17.43 -0.09 0.01 16 9 N -0.90 -25.61 11.01 55.49 0.61 -25.00 16 10 Si 0.90 21.26 29.57 -169.99 -5.03 16.24 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.15 3.10 6.52 -3.72 -0.02 3.07 16 15 C -0.14 -2.48 5.65 -26.61 -0.15 -2.63 16 16 C 0.16 2.56 1.88 -67.89 -0.13 2.43 16 17 H 0.09 1.60 7.57 -51.93 -0.39 1.21 16 18 N -0.71 -9.32 4.31 -54.80 -0.24 -9.55 16 19 C 0.56 7.83 7.70 -12.45 -0.10 7.74 16 20 O -0.53 -9.08 13.13 5.28 0.07 -9.01 16 21 C -0.09 -1.11 5.90 -104.66 -0.62 -1.73 16 22 C -0.08 -0.72 9.51 -39.13 -0.37 -1.09 16 23 C -0.11 -0.75 9.93 -39.98 -0.40 -1.15 16 24 C -0.09 -0.69 9.79 -39.47 -0.39 -1.08 16 25 C -0.03 -0.31 5.74 -106.84 -0.61 -0.92 16 26 C -0.17 -1.49 9.88 -39.37 -0.39 -1.88 16 27 C 0.08 0.81 11.07 -17.97 -0.20 0.62 16 28 N -0.49 -6.66 10.30 -13.22 -0.14 -6.79 16 29 C 0.15 2.08 10.49 -17.06 -0.18 1.90 16 30 C -0.08 -1.02 5.76 -106.59 -0.61 -1.63 16 31 H 0.04 0.50 7.36 -51.93 -0.38 0.12 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.40 4.13 6.38 -40.82 -0.26 3.87 16 42 H 0.13 0.86 6.42 -52.49 -0.34 0.52 16 43 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 44 H 0.13 0.64 8.06 -52.48 -0.42 0.21 16 45 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 47 H 0.20 3.08 4.97 -52.49 -0.26 2.82 16 LS Contribution 375.19 15.07 5.65 5.65 Total: -1.00 -31.56 375.19 -10.44 -42.00 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.56 Total: 4.62 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -4.30 Total: -3.19 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.28 Total: -56.31 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.07 Total: -9.01 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.56 -10.44 -42.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943815557.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.901 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds