Wall clock time and date at job start Tue Mar 31 2020 22:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.50040 * 2 1 4 4 C 1.52764 * 109.56728 * 240.02920 * 2 1 3 5 5 N 1.46927 * 109.00753 * 185.55663 * 4 2 1 6 6 C 1.36939 * 120.62681 * 233.57863 * 5 4 2 7 7 H 1.07995 * 119.99655 * 148.72190 * 6 5 4 8 8 C 1.38807 * 120.00200 * 328.73211 * 6 5 4 9 9 N 1.31627 * 120.00026 * 349.88105 * 8 6 5 10 10 Si 1.86806 * 120.00392 * 170.16179 * 8 6 5 11 11 H 1.48509 * 109.46753 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47190 * 119.99365 * 10 8 6 13 13 H 1.48499 * 109.46942 * 240.00122 * 10 8 6 14 14 C 1.46917 * 118.73985 * 53.30964 * 5 4 2 15 15 C 1.53193 * 108.77819 * 306.64126 * 14 5 4 16 16 C 1.53037 * 109.31019 * 54.63412 * 15 14 5 17 17 H 1.08999 * 109.45887 * 58.64494 * 16 15 14 18 18 N 1.46496 * 109.46259 * 178.61485 * 16 15 14 19 19 C 1.34776 * 120.00256 * 275.00780 * 18 16 15 20 20 O 1.21593 * 119.99970 * 359.97438 * 19 18 16 21 21 C 1.47569 * 120.00210 * 179.97438 * 19 18 16 22 22 C 1.38703 * 120.43212 * 5.81550 * 21 19 18 23 23 C 1.39002 * 120.75017 * 179.97438 * 22 21 19 24 24 C 1.36339 * 121.18943 * 0.02562 * 23 22 21 25 25 C 1.40353 * 119.93358 * 359.97438 * 24 23 22 26 26 C 1.40685 * 122.10309 * 179.97438 * 25 24 23 27 27 C 1.36266 * 118.66176 * 180.02562 * 26 25 24 28 28 N 1.32508 * 121.84282 * 359.97438 * 27 26 25 29 29 C 1.31313 * 122.72070 * 0.02861 * 28 27 26 30 30 C 1.40132 * 119.91865 * 359.73958 * 29 28 27 31 31 H 1.08999 * 109.47636 * 299.93432 * 1 2 3 32 32 H 1.09004 * 109.46709 * 59.93809 * 1 2 3 33 33 H 1.08999 * 109.47234 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.50671 * 65.67136 * 4 2 1 35 35 H 1.09004 * 109.42712 * 305.39091 * 4 2 1 36 36 H 0.96999 * 119.99725 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.58949 * 66.43220 * 14 5 4 38 38 H 1.08998 * 109.58554 * 186.71290 * 14 5 4 39 39 H 1.09000 * 109.49996 * 174.58623 * 15 14 5 40 40 H 1.08999 * 109.49524 * 294.65182 * 15 14 5 41 41 H 0.97000 * 120.00170 * 94.99687 * 18 16 15 42 42 H 1.08000 * 119.62331 * 359.95043 * 22 21 19 43 43 H 1.08001 * 119.40426 * 180.02562 * 23 22 21 44 44 H 1.08008 * 120.03186 * 179.97438 * 24 23 22 45 45 H 1.07994 * 120.67171 * 359.97438 * 26 25 24 46 46 H 1.07999 * 119.07410 * 179.97438 * 27 26 25 47 47 H 1.07995 * 120.03739 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7191 -1.2469 5 7 3.5046 -0.8295 -1.1692 6 6 4.2937 -0.3792 -2.1939 7 1 5.2790 0.0105 -1.9854 8 6 3.8269 -0.4236 -3.5004 9 7 2.7182 -1.0750 -3.7814 10 14 4.7764 0.4346 -4.8611 11 1 5.9822 1.0855 -4.2887 12 1 5.1888 -0.5623 -5.8816 13 1 3.9127 1.4632 -5.4945 14 6 4.1052 -1.4267 0.0313 15 6 3.5708 -0.6947 1.2663 16 6 2.0408 -0.7227 1.2486 17 1 1.6967 -1.7569 1.2356 18 7 1.5264 -0.0523 2.4453 19 6 1.3970 -0.7375 3.5986 20 8 1.7069 -1.9124 3.6457 21 6 0.8794 -0.0621 4.8042 22 6 0.4109 1.2415 4.7326 23 6 -0.0786 1.8839 5.8639 24 6 -0.1127 1.2557 7.0734 25 6 0.3516 -0.0637 7.1907 26 6 0.3380 -0.7550 8.4159 27 6 0.8063 -2.0342 8.4498 28 7 1.2699 -2.6379 7.3652 29 6 1.3119 -2.0529 6.1903 30 6 0.8490 -0.7380 6.0473 31 1 -0.3634 0.5128 0.8905 32 1 -0.3633 0.5148 -0.8895 33 1 -0.3634 -1.0276 -0.0005 34 1 1.7647 -0.1502 -2.1345 35 1 1.6020 -1.7153 -1.2970 36 1 2.3923 -1.1063 -4.6944 37 1 3.8375 -2.4818 0.0875 38 1 5.1896 -1.3269 -0.0144 39 1 3.9333 -1.1891 2.1675 40 1 3.9164 0.3390 1.2544 41 1 1.2790 0.8849 2.4076 42 1 0.4270 1.7634 3.7872 43 1 -0.4383 2.8991 5.7833 44 1 -0.4966 1.7727 7.9405 45 1 -0.0353 -0.2811 9.3117 46 1 0.7993 -2.5709 9.3870 47 1 1.6984 -2.5861 5.3344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943815557.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:14 Heat of formation + Delta-G solvation = 21.998381 kcal Electronic energy + Delta-G solvation = -29127.471037 eV Core-core repulsion = 25274.657187 eV Total energy + Delta-G solvation = -3852.813850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.13073 -40.84362 -39.20496 -38.17023 -36.22773 -34.27780 -33.74213 -33.51217 -32.16846 -31.49884 -30.34880 -27.55595 -27.04419 -25.62430 -24.61195 -24.44265 -23.39763 -22.52398 -21.68461 -20.86755 -19.13706 -18.83627 -18.53423 -17.79816 -17.26314 -17.01574 -16.71968 -16.25760 -16.02031 -15.61981 -15.52362 -15.36827 -15.09959 -14.75998 -14.64553 -14.57384 -14.41711 -14.13435 -13.68766 -13.52679 -13.17849 -13.06239 -12.99737 -12.89972 -12.87519 -12.59829 -12.53384 -12.41200 -12.00889 -11.84878 -11.73470 -11.55819 -11.26224 -11.17805 -10.85418 -10.57884 -10.38027 -10.16774 -10.08188 -9.08775 -8.65396 -7.86783 -5.38331 -0.90538 -0.11343 0.58751 1.47254 1.49106 1.59494 1.73451 2.03439 2.23712 2.50803 3.08980 3.29356 3.46406 3.54634 3.65463 3.69935 3.76422 3.80252 3.86125 3.96224 4.02959 4.18971 4.23020 4.34450 4.40471 4.57517 4.57912 4.67877 4.73563 4.75050 4.81162 4.85338 4.90088 4.94920 5.00135 5.03821 5.10614 5.17889 5.21042 5.30553 5.35294 5.35415 5.52286 5.53027 5.65733 5.68381 5.77086 5.80029 6.41455 6.50730 7.01276 7.15877 7.18978 7.83429 8.37351 9.19508 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024596 B = 0.002451 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.128735 B =11421.096370 C =11925.355528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 H 0.077 0.923 4 C 0.188 3.812 5 N -0.610 5.610 6 C -0.262 4.262 7 H 0.066 0.934 8 C -0.048 4.048 9 N -0.936 5.936 10 Si 0.970 3.030 11 H -0.266 1.266 12 H -0.294 1.294 13 H -0.287 1.287 14 C 0.145 3.855 15 C -0.126 4.126 16 C 0.169 3.831 17 H 0.058 0.942 18 N -0.696 5.696 19 C 0.555 3.445 20 O -0.572 6.572 21 C -0.130 4.130 22 C -0.059 4.059 23 C -0.107 4.107 24 C -0.073 4.073 25 C -0.051 4.051 26 C -0.142 4.142 27 C 0.050 3.950 28 N -0.516 5.516 29 C 0.110 3.890 30 C -0.094 4.094 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.066 0.934 35 H -0.011 1.011 36 H 0.251 0.749 37 H 0.005 0.995 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.413 0.587 42 H 0.159 0.841 43 H 0.176 0.824 44 H 0.175 0.825 45 H 0.180 0.820 46 H 0.177 0.823 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.712 11.225 24.509 28.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.128 4.128 3 H 0.095 0.905 4 C 0.062 3.938 5 N -0.333 5.333 6 C -0.392 4.392 7 H 0.084 0.916 8 C -0.244 4.244 9 N -0.582 5.582 10 Si 0.798 3.202 11 H -0.191 1.191 12 H -0.222 1.222 13 H -0.213 1.213 14 C 0.018 3.982 15 C -0.166 4.166 16 C 0.065 3.935 17 H 0.077 0.923 18 N -0.347 5.347 19 C 0.344 3.656 20 O -0.453 6.453 21 C -0.135 4.135 22 C -0.078 4.078 23 C -0.125 4.125 24 C -0.091 4.091 25 C -0.057 4.057 26 C -0.161 4.161 27 C -0.094 4.094 28 N -0.225 5.225 29 C -0.059 4.059 30 C -0.097 4.097 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.007 0.993 36 H 0.060 0.940 37 H 0.023 0.977 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.251 0.749 42 H 0.176 0.824 43 H 0.193 0.807 44 H 0.192 0.808 45 H 0.198 0.802 46 H 0.194 0.806 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -9.265 9.518 24.582 27.941 hybrid contribution 0.282 0.665 -1.410 1.584 sum -8.982 10.183 23.172 26.857 Atomic orbital electron populations 1.21688 0.93532 1.01471 1.02389 1.21837 0.96547 1.00049 0.94340 0.90480 1.20541 0.82474 0.95646 0.95143 1.44317 1.02333 1.69785 1.16911 1.19534 0.99642 1.33871 0.86176 0.91613 1.25922 0.99028 0.99918 0.99494 1.70147 1.24485 1.44740 1.18806 0.85165 0.78393 0.77594 0.79028 1.19076 1.22162 1.21312 1.20957 0.96837 0.93856 0.86509 1.22197 0.95392 1.01274 0.97750 1.20704 0.93143 0.96262 0.83419 0.92336 1.45893 1.64871 1.14912 1.09032 1.18523 0.77409 0.86030 0.83653 1.90583 1.52520 1.17761 1.84460 1.19787 1.05467 0.96374 0.91890 1.21879 0.92969 0.91669 1.01240 1.21389 0.97878 1.02077 0.91201 1.21647 0.95713 0.91612 1.00111 1.18555 0.98257 0.96055 0.92799 1.22329 1.00040 0.95512 0.98235 1.22813 0.95541 0.93892 0.97105 1.67564 1.15466 1.39474 1.00004 1.24282 0.93639 0.92246 0.95704 1.18977 1.00937 0.95803 0.93973 0.90434 0.92336 0.94059 0.91609 0.99263 0.94019 0.97654 0.92446 0.92218 0.91317 0.74896 0.82384 0.80684 0.80803 0.80232 0.80631 0.81042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 9.03 71.98 0.65 -3.12 16 2 C -0.11 -3.69 2.44 -10.86 -0.03 -3.72 16 3 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 4 C 0.19 8.89 4.51 86.22 0.39 9.28 16 5 N -0.61 -30.76 2.99 -699.95 -2.10 -32.86 16 6 C -0.26 -14.32 9.59 84.03 0.81 -13.51 16 7 H 0.07 3.51 7.85 -2.91 -0.02 3.49 16 8 C -0.05 -2.67 5.06 84.86 0.43 -2.24 16 9 N -0.94 -54.83 11.01 21.65 0.24 -54.60 16 10 Si 0.97 44.31 29.57 68.60 2.03 46.34 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 13 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 14 C 0.14 6.32 6.52 86.36 0.56 6.88 16 15 C -0.13 -4.50 5.65 30.67 0.17 -4.33 16 16 C 0.17 5.65 1.88 45.02 0.08 5.73 16 17 H 0.06 2.31 7.57 -2.39 -0.02 2.29 16 18 N -0.70 -17.60 4.31 -445.55 -1.92 -19.52 16 19 C 0.55 15.85 7.70 86.71 0.67 16.51 16 20 O -0.57 -21.03 13.13 -4.01 -0.05 -21.08 16 21 C -0.13 -2.94 5.90 -19.89 -0.12 -3.06 16 22 C -0.06 -0.79 9.51 22.56 0.21 -0.58 16 23 C -0.11 -0.91 9.93 22.01 0.22 -0.69 16 24 C -0.07 -0.72 9.79 22.34 0.22 -0.50 16 25 C -0.05 -0.91 5.74 -21.30 -0.12 -1.03 16 26 C -0.14 -2.11 9.88 22.41 0.22 -1.88 16 27 C 0.05 0.99 11.07 84.13 0.93 1.92 16 28 N -0.52 -14.76 10.30 -195.73 -2.02 -16.77 16 29 C 0.11 3.35 10.49 85.23 0.89 4.25 16 30 C -0.09 -2.35 5.76 -21.14 -0.12 -2.47 16 31 H 0.08 1.64 7.36 -2.39 -0.02 1.63 16 32 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 3.49 6.07 -2.39 -0.01 3.47 16 35 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 36 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 37 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.06 2.44 7.93 -2.39 -0.02 2.43 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.41 7.39 6.38 -92.71 -0.59 6.80 16 42 H 0.16 1.23 6.42 -2.91 -0.02 1.22 16 43 H 0.18 0.16 8.06 -2.91 -0.02 0.13 16 44 H 0.17 0.35 8.06 -2.91 -0.02 0.33 16 45 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 46 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 47 H 0.17 6.05 4.97 -2.93 -0.01 6.03 16 Total: -1.00 -75.63 375.19 2.66 -72.97 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.40 Total: 18.06 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 6.07 Total: 7.45 kcal Atomic # 7 Polarization: -117.95 SS G_CDS: -5.79 Total: -123.75 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.05 Total: -21.08 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -75.63 2.66 -72.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943815557.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.969 kcal (2) G-P(sol) polarization free energy of solvation -75.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds