Wall clock time and date at job start Tue Mar 31 2020 22:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.49989 * 2 1 4 4 C 1.53186 * 109.52740 * 239.91891 * 2 1 3 5 5 N 1.46931 * 108.77747 * 185.39505 * 4 2 1 6 6 C 1.36935 * 120.62993 * 233.58543 * 5 4 2 7 7 H 1.07995 * 120.00378 * 31.24128 * 6 5 4 8 8 C 1.38817 * 119.99551 * 211.24374 * 6 5 4 9 9 N 1.31611 * 120.00237 * 9.90005 * 8 6 5 10 10 Si 1.86808 * 119.99673 * 189.90054 * 8 6 5 11 11 H 1.48499 * 109.47271 * 59.99873 * 10 8 6 12 12 H 1.48500 * 109.47092 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47012 * 299.99766 * 10 8 6 14 14 C 1.46929 * 118.73591 * 53.60926 * 5 4 2 15 15 C 1.53188 * 108.77396 * 306.39193 * 14 5 4 16 16 C 1.53035 * 109.49837 * 120.06211 * 2 1 3 17 17 H 1.08998 * 109.46129 * 301.35469 * 16 2 1 18 18 N 1.46502 * 109.46179 * 61.32976 * 16 2 1 19 19 C 1.34774 * 120.00202 * 205.27655 * 18 16 2 20 20 O 1.21591 * 120.00127 * 359.72585 * 19 18 16 21 21 C 1.47560 * 120.00054 * 179.72297 * 19 18 16 22 22 C 1.38713 * 120.43503 * 5.84244 * 21 19 18 23 23 C 1.38998 * 120.75205 * 179.67814 * 22 21 19 24 24 C 1.36336 * 121.19100 * 0.65217 * 23 22 21 25 25 C 1.40357 * 119.93010 * 359.64972 * 24 23 22 26 26 C 1.40680 * 122.10099 * 180.02562 * 25 24 23 27 27 C 1.36262 * 118.66585 * 179.97438 * 26 25 24 28 28 N 1.32508 * 121.84185 * 359.97438 * 27 26 25 29 29 C 1.31322 * 122.71844 * 0.02562 * 28 27 26 30 30 C 1.40132 * 119.91569 * 359.97438 * 29 28 27 31 31 H 1.08996 * 109.47738 * 299.93965 * 1 2 3 32 32 H 1.09005 * 109.47309 * 59.93717 * 1 2 3 33 33 H 1.09002 * 109.46924 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.58716 * 305.18255 * 4 2 1 35 35 H 1.09003 * 109.58921 * 65.60786 * 4 2 1 36 36 H 0.97008 * 120.00125 * 180.02562 * 9 8 6 37 37 H 1.09006 * 109.58469 * 66.17955 * 14 5 4 38 38 H 1.08998 * 109.58188 * 186.60443 * 14 5 4 39 39 H 1.09002 * 109.49882 * 294.68404 * 15 14 5 40 40 H 1.09006 * 109.49586 * 174.59140 * 15 14 5 41 41 H 0.96996 * 119.99498 * 25.00415 * 18 16 2 42 42 H 1.08003 * 119.61872 * 359.97438 * 22 21 19 43 43 H 1.08002 * 119.40099 * 180.30032 * 23 22 21 44 44 H 1.07999 * 120.03852 * 179.67731 * 24 23 22 45 45 H 1.08001 * 120.66899 * 0.02562 * 26 25 24 46 46 H 1.08003 * 119.08441 * 179.97438 * 27 26 25 47 47 H 1.07998 * 120.03645 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0420 -0.7236 -1.2493 5 7 3.5054 -0.8282 -1.1689 6 6 4.2943 -0.3781 -2.1936 7 1 3.9726 0.4590 -2.7952 8 6 5.5077 -0.9981 -2.4591 9 7 5.8126 -2.1306 -1.8619 10 14 6.7077 -0.2247 -3.6639 11 1 7.0928 1.1257 -3.1811 12 1 7.9192 -1.0767 -3.7715 13 1 6.0647 -0.1089 -4.9975 14 6 4.1060 -1.4254 0.0317 15 6 3.5708 -0.6939 1.2667 16 6 2.0407 -0.7226 1.2485 17 1 1.6579 -0.2240 2.1389 18 7 1.5790 -2.1129 1.2311 19 6 1.4455 -2.7932 2.3868 20 8 1.7132 -2.2548 3.4437 21 6 0.9746 -4.1916 2.3697 22 6 0.7821 -4.8535 1.1660 23 6 0.3451 -6.1727 1.1423 24 6 0.0805 -6.8497 2.2957 25 6 0.2559 -6.2159 3.5357 26 6 -0.0027 -6.8711 4.7535 27 6 0.1919 -6.1891 5.9169 28 7 0.6160 -4.9337 5.9288 29 6 0.8765 -4.2621 4.8308 30 6 0.7084 -4.8734 3.5811 31 1 -0.3634 0.5129 0.8905 32 1 -0.3634 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6064 -1.7217 -1.2978 35 1 1.7644 -0.1580 -2.1388 36 1 6.6607 -2.5636 -2.0472 37 1 3.8387 -2.4807 0.0877 38 1 5.1902 -1.3227 -0.0125 39 1 3.9153 0.3402 1.2548 40 1 3.9334 -1.1882 2.1679 41 1 1.3655 -2.5424 0.3880 42 1 0.9787 -4.3394 0.2367 43 1 0.2072 -6.6686 0.1928 44 1 -0.2632 -7.8728 2.2555 45 1 -0.3477 -7.8945 4.7660 46 1 -0.0050 -6.6854 6.8557 47 1 1.2206 -3.2402 4.8910 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943815560.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:19 Heat of formation + Delta-G solvation = 43.101621 kcal Electronic energy + Delta-G solvation = -29728.682383 eV Core-core repulsion = 25876.783638 eV Total energy + Delta-G solvation = -3851.898745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.17123 -39.73656 -37.80299 -37.22426 -34.36726 -33.14685 -32.58532 -31.29489 -31.19479 -30.39882 -29.33707 -25.96500 -25.42791 -24.65700 -23.60831 -23.39671 -22.02000 -21.18941 -20.63626 -18.78676 -18.16786 -17.78093 -16.85340 -16.70561 -16.21113 -15.59659 -15.15594 -14.94758 -14.85988 -14.51038 -14.17829 -14.12168 -13.77143 -13.69187 -13.48686 -13.28205 -12.96992 -12.79177 -12.58316 -12.22724 -12.20384 -12.11773 -11.71521 -11.51380 -11.42316 -11.08350 -10.83834 -10.74192 -10.40882 -10.28457 -10.25118 -10.09788 -9.80750 -9.73861 -9.48492 -9.37741 -9.29062 -8.73233 -8.51758 -8.20868 -6.67975 -5.83037 -3.32374 -0.01080 0.74894 1.53323 2.66190 3.26304 3.30314 3.34502 3.40553 3.41006 4.01804 4.35739 4.43021 4.44267 4.55739 4.63253 4.75505 4.79449 4.93101 5.11073 5.15281 5.28562 5.31907 5.42986 5.45503 5.55823 5.57325 5.59277 5.78450 5.85729 5.89765 5.93485 6.02328 6.04002 6.11825 6.15851 6.23223 6.29803 6.40457 6.49385 6.58544 6.62475 6.66705 6.73935 6.84366 6.93770 7.34742 7.66639 7.69929 7.74358 7.95315 8.35471 8.42192 9.16782 9.77776 10.34864 11.24103 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.003035 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.634258 B = 9222.376772 C = 9696.338994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 H 0.083 0.917 4 C 0.152 3.848 5 N -0.591 5.591 6 C -0.256 4.256 7 H 0.064 0.936 8 C 0.006 3.994 9 N -0.903 5.903 10 Si 0.905 3.095 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.283 1.283 14 C 0.174 3.826 15 C -0.156 4.156 16 C 0.159 3.841 17 H 0.077 0.923 18 N -0.698 5.698 19 C 0.559 3.441 20 O -0.540 6.540 21 C -0.095 4.095 22 C -0.077 4.077 23 C -0.103 4.103 24 C -0.092 4.092 25 C -0.031 4.031 26 C -0.165 4.165 27 C 0.075 3.925 28 N -0.493 5.493 29 C 0.147 3.853 30 C -0.079 4.079 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.011 0.989 35 H 0.057 0.943 36 H 0.255 0.745 37 H 0.017 0.983 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.401 0.599 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.137 0.863 46 H 0.150 0.850 47 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.944 -7.896 7.816 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 H 0.102 0.898 4 C 0.025 3.975 5 N -0.314 5.314 6 C -0.385 4.385 7 H 0.081 0.919 8 C -0.193 4.193 9 N -0.547 5.547 10 Si 0.735 3.265 11 H -0.210 1.210 12 H -0.216 1.216 13 H -0.209 1.209 14 C 0.048 3.952 15 C -0.196 4.196 16 C 0.056 3.944 17 H 0.095 0.905 18 N -0.349 5.349 19 C 0.346 3.654 20 O -0.420 6.420 21 C -0.100 4.100 22 C -0.096 4.096 23 C -0.122 4.122 24 C -0.110 4.110 25 C -0.036 4.036 26 C -0.185 4.185 27 C -0.068 4.068 28 N -0.201 5.201 29 C -0.022 4.022 30 C -0.082 4.082 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.029 0.971 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.035 0.965 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.238 0.762 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.152 0.848 45 H 0.154 0.846 46 H 0.168 0.832 47 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -13.499 -7.307 9.378 17.988 hybrid contribution 0.500 -0.541 -1.969 2.102 sum -12.999 -7.848 7.409 16.896 Atomic orbital electron populations 1.21774 0.95736 1.01299 1.01221 1.21967 0.94565 1.00861 0.96669 0.89845 1.20916 0.86234 0.95932 0.94409 1.44027 0.99011 1.71622 1.16694 1.19112 1.00677 1.09652 1.09090 0.91867 1.25154 0.99972 0.95440 0.98694 1.69951 1.23401 1.16294 1.45098 0.86343 0.80572 0.78533 0.81092 1.20958 1.21615 1.20892 1.20760 0.99547 0.92782 0.82065 1.22596 0.93936 1.02086 1.00947 1.20978 0.95331 0.79955 0.98172 0.90540 1.46050 1.65914 1.14552 1.08359 1.18004 0.77830 0.85226 0.84370 1.90537 1.51776 1.69637 1.30037 1.19989 1.02300 0.94556 0.93162 1.21531 0.95741 0.94952 0.97389 1.20934 0.98069 0.94209 0.98979 1.21136 0.98703 0.99990 0.91207 1.18160 0.97929 0.93022 0.94478 1.21846 1.03141 1.01128 0.92365 1.22299 0.95638 0.90849 0.98009 1.67683 1.11588 1.08547 1.32260 1.24653 0.90321 1.01533 0.85712 1.18862 1.00748 0.93842 0.94772 0.93185 0.92672 0.93166 0.97124 0.92418 0.93525 0.96483 0.89294 0.91671 0.92574 0.76167 0.84742 0.84697 0.84804 0.84561 0.83222 0.78284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.06 37.15 0.34 -1.45 16 2 C -0.12 -1.86 2.67 -90.51 -0.24 -2.10 16 3 H 0.08 1.36 8.14 -51.92 -0.42 0.93 16 4 C 0.15 2.82 5.50 -3.71 -0.02 2.80 16 5 N -0.59 -13.74 2.99 -172.31 -0.51 -14.25 16 6 C -0.26 -6.67 9.59 -15.06 -0.14 -6.81 16 7 H 0.06 1.62 7.85 -52.49 -0.41 1.21 16 8 C 0.01 0.17 5.07 -17.43 -0.09 0.08 16 9 N -0.90 -25.29 10.99 55.49 0.61 -24.68 16 10 Si 0.90 21.12 29.57 -169.99 -5.03 16.09 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.17 3.97 5.00 -3.71 -0.02 3.95 16 15 C -0.16 -2.98 5.77 -26.61 -0.15 -3.13 16 16 C 0.16 2.60 2.21 -67.89 -0.15 2.45 16 17 H 0.08 1.25 7.57 -51.93 -0.39 0.86 16 18 N -0.70 -10.56 3.55 -54.80 -0.19 -10.75 16 19 C 0.56 8.78 7.70 -12.46 -0.10 8.68 16 20 O -0.54 -9.63 13.14 5.29 0.07 -9.56 16 21 C -0.10 -1.32 5.90 -104.66 -0.62 -1.94 16 22 C -0.08 -0.89 9.51 -39.12 -0.37 -1.26 16 23 C -0.10 -0.98 9.93 -39.99 -0.40 -1.38 16 24 C -0.09 -0.88 9.79 -39.47 -0.39 -1.26 16 25 C -0.03 -0.36 5.74 -106.84 -0.61 -0.98 16 26 C -0.17 -1.68 9.88 -39.37 -0.39 -2.07 16 27 C 0.08 0.86 11.07 -17.97 -0.20 0.66 16 28 N -0.49 -7.11 10.30 -13.22 -0.14 -7.24 16 29 C 0.15 2.22 10.49 -17.06 -0.18 2.04 16 30 C -0.08 -1.12 5.76 -106.59 -0.61 -1.74 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.60 7.54 -51.93 -0.39 0.21 16 34 H 0.01 0.20 6.64 -51.93 -0.34 -0.15 16 35 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 36 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.02 0.41 7.74 -51.93 -0.40 0.00 16 38 H 0.09 2.35 6.06 -51.93 -0.31 2.03 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.40 5.69 4.80 -40.82 -0.20 5.49 16 42 H 0.13 1.42 6.42 -52.48 -0.34 1.08 16 43 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 47 H 0.20 3.22 4.98 -52.49 -0.26 2.96 16 LS Contribution 371.28 15.07 5.60 5.60 Total: -1.00 -30.56 371.28 -10.35 -40.91 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.40 Total: 7.35 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -4.34 Total: -3.45 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.24 Total: -56.93 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.07 Total: -9.56 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.56 -10.35 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943815560.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.007 kcal (2) G-P(sol) polarization free energy of solvation -30.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds