Wall clock time and date at job start Tue Mar 31 2020 22:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.49611 * 2 1 4 4 C 1.52759 * 109.56584 * 240.02660 * 2 1 3 5 5 N 1.46926 * 109.00774 * 185.55384 * 4 2 1 6 6 C 1.36943 * 120.62758 * 233.58797 * 5 4 2 7 7 H 1.08004 * 119.99685 * 152.30589 * 6 5 4 8 8 C 1.38811 * 119.99929 * 332.29737 * 6 5 4 9 9 N 1.31611 * 119.99990 * 342.51084 * 8 6 5 10 10 Si 1.86805 * 119.99866 * 162.78300 * 8 6 5 11 11 H 1.48501 * 109.46856 * 60.00007 * 10 8 6 12 12 H 1.48492 * 109.47015 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47103 * 300.00279 * 10 8 6 14 14 C 1.46923 * 118.74121 * 53.30670 * 5 4 2 15 15 C 1.53185 * 108.77652 * 306.64678 * 14 5 4 16 16 C 1.53041 * 109.31552 * 54.63248 * 15 14 5 17 17 H 1.09003 * 109.45585 * 58.64165 * 16 15 14 18 18 N 1.46501 * 109.46066 * 178.61495 * 16 15 14 19 19 C 1.34773 * 119.99886 * 274.99890 * 18 16 15 20 20 O 1.21550 * 120.00116 * 0.02562 * 19 18 16 21 21 C 1.47889 * 119.99943 * 180.02562 * 19 18 16 22 22 C 1.40597 * 119.72984 * 359.97438 * 21 19 18 23 23 C 1.35844 * 120.95172 * 179.97438 * 22 21 19 24 24 C 1.40498 * 119.88069 * 359.97438 * 23 22 21 25 25 C 1.40484 * 121.83510 * 180.02562 * 24 23 22 26 26 N 1.31214 * 119.93466 * 179.97438 * 25 24 23 27 27 C 1.32550 * 122.80594 * 0.02562 * 26 25 24 28 28 C 1.36224 * 121.84726 * 359.97438 * 27 26 25 29 29 C 1.40755 * 118.67378 * 0.02562 * 28 27 26 30 30 C 1.38537 * 119.72946 * 179.72557 * 21 19 18 31 31 H 1.09003 * 109.47124 * 299.93977 * 1 2 3 32 32 H 1.08997 * 109.47281 * 59.93960 * 1 2 3 33 33 H 1.08997 * 109.46847 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.50461 * 65.67355 * 4 2 1 35 35 H 1.08998 * 109.43426 * 305.38910 * 4 2 1 36 36 H 0.97007 * 119.99945 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.58544 * 66.43706 * 14 5 4 38 38 H 1.09000 * 109.58920 * 186.85226 * 14 5 4 39 39 H 1.09001 * 109.49683 * 174.58184 * 15 14 5 40 40 H 1.09003 * 109.49731 * 294.64570 * 15 14 5 41 41 H 0.96998 * 119.99880 * 95.00332 * 18 16 15 42 42 H 1.07997 * 119.52313 * 359.95969 * 22 21 19 43 43 H 1.08002 * 120.06242 * 180.02562 * 23 22 21 44 44 H 1.07998 * 120.03544 * 359.96585 * 25 24 23 45 45 H 1.08001 * 119.07770 * 180.02562 * 27 26 25 46 46 H 1.07994 * 120.65886 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.36503 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7191 -1.2469 5 7 3.5046 -0.8295 -1.1692 6 6 4.2936 -0.3791 -2.1939 7 1 5.3003 -0.0433 -1.9928 8 6 3.7997 -0.3543 -3.4909 9 7 2.7352 -1.0624 -3.8033 10 14 4.6503 0.6782 -4.7947 11 1 6.0530 0.2173 -4.9537 12 1 3.9321 0.5344 -6.0863 13 1 4.6419 2.1042 -4.3802 14 6 4.1053 -1.4266 0.0313 15 6 3.5708 -0.6946 1.2663 16 6 2.0408 -0.7226 1.2486 17 1 1.6968 -1.7569 1.2357 18 7 1.5265 -0.0521 2.4454 19 6 1.3972 -0.7374 3.5986 20 8 1.7076 -1.9116 3.6460 21 6 0.8775 -0.0606 4.8066 22 6 0.5206 1.2979 4.7455 23 6 0.0402 1.9439 5.8397 24 6 -0.1056 1.2515 7.0535 25 6 -0.5986 1.8787 8.2099 26 7 -0.7200 1.1961 9.3239 27 6 -0.3942 -0.0851 9.4202 28 6 0.0927 -0.7848 8.3576 29 6 0.2515 -0.1203 7.1270 30 6 0.7414 -0.7719 5.9876 31 1 -0.3633 0.5129 0.8905 32 1 -0.3634 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7646 -0.1502 -2.1344 35 1 1.6021 -1.7153 -1.2969 36 1 2.3898 -1.0448 -4.7096 37 1 3.8376 -2.4818 0.0876 38 1 5.1896 -1.3246 -0.0132 39 1 3.9334 -1.1890 2.1675 40 1 3.9164 0.3392 1.2543 41 1 1.2790 0.8850 2.4076 42 1 0.6301 1.8357 3.8154 43 1 -0.2300 2.9877 5.7766 44 1 -0.8773 2.9218 8.1820 45 1 -0.5190 -0.5887 10.3674 46 1 0.3525 -1.8282 8.4577 47 1 1.0131 -1.8162 6.0304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943964138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:30 Heat of formation + Delta-G solvation = 34.443941 kcal Electronic energy + Delta-G solvation = -28626.414023 eV Core-core repulsion = 24774.139853 eV Total energy + Delta-G solvation = -3852.274170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.25069 -39.92341 -37.97262 -37.05416 -34.64884 -33.39746 -32.61235 -31.90475 -31.46987 -29.99562 -29.37486 -26.09096 -25.74158 -24.47867 -24.15187 -22.74483 -22.17276 -20.92897 -20.72271 -19.54899 -18.31576 -17.98056 -17.05877 -16.75968 -16.29240 -15.82811 -15.31058 -15.05496 -14.82669 -14.48752 -14.28224 -14.04679 -13.97825 -13.85410 -13.65545 -13.27322 -13.14352 -12.94075 -12.73714 -12.55876 -12.32495 -12.07888 -11.51837 -11.47980 -11.34943 -11.10566 -10.78124 -10.67616 -10.63493 -10.41545 -10.24506 -10.06528 -10.04074 -9.88585 -9.73944 -9.51831 -9.46454 -8.78094 -8.49851 -8.46413 -6.72298 -5.82279 -3.24059 -0.13993 0.32137 1.47826 2.27119 3.16880 3.21323 3.36479 3.42293 3.43212 3.74039 4.00614 4.12516 4.31481 4.37083 4.46853 4.52784 4.62611 4.78532 4.84776 5.15368 5.21532 5.27913 5.29047 5.34353 5.42294 5.52626 5.54177 5.62810 5.65173 5.82854 5.88127 5.92419 6.03822 6.09456 6.18144 6.21224 6.29805 6.34570 6.41113 6.46125 6.55044 6.64254 6.75530 6.87995 6.95541 7.29450 7.53706 7.56114 7.63940 7.76850 8.23916 8.41303 9.17663 9.80944 10.37601 11.26553 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029418 B = 0.002148 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.580814 B =13032.189758 C =13306.656837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 H 0.068 0.932 4 C 0.181 3.819 5 N -0.593 5.593 6 C -0.253 4.253 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.902 5.902 10 Si 0.902 3.098 11 H -0.282 1.282 12 H -0.290 1.290 13 H -0.284 1.284 14 C 0.148 3.852 15 C -0.140 4.140 16 C 0.156 3.844 17 H 0.084 0.916 18 N -0.712 5.712 19 C 0.551 3.449 20 O -0.535 6.535 21 C -0.107 4.107 22 C -0.093 4.093 23 C -0.091 4.091 24 C -0.099 4.099 25 C 0.143 3.857 26 N -0.485 5.485 27 C 0.071 3.929 28 C -0.144 4.144 29 C -0.034 4.034 30 C -0.046 4.046 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.021 0.979 36 H 0.255 0.745 37 H 0.021 0.979 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.395 0.605 42 H 0.132 0.868 43 H 0.140 0.860 44 H 0.165 0.835 45 H 0.155 0.845 46 H 0.142 0.858 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.223 6.141 21.933 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 H 0.086 0.914 4 C 0.054 3.946 5 N -0.315 5.315 6 C -0.383 4.383 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.546 5.546 10 Si 0.732 3.268 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.211 1.211 14 C 0.021 3.979 15 C -0.181 4.181 16 C 0.053 3.947 17 H 0.102 0.898 18 N -0.362 5.362 19 C 0.337 3.663 20 O -0.413 6.413 21 C -0.112 4.112 22 C -0.112 4.112 23 C -0.111 4.111 24 C -0.102 4.102 25 C -0.029 4.029 26 N -0.193 5.193 27 C -0.072 4.072 28 C -0.163 4.163 29 C -0.039 4.039 30 C -0.065 4.065 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.039 0.961 36 H 0.065 0.935 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.230 0.770 42 H 0.150 0.850 43 H 0.157 0.843 44 H 0.182 0.818 45 H 0.172 0.828 46 H 0.159 0.841 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.357 5.530 22.571 24.696 hybrid contribution 0.607 0.557 -1.491 1.703 sum -7.750 6.087 21.081 23.270 Atomic orbital electron populations 1.21733 0.95828 1.01563 1.00612 1.22100 0.94748 1.00666 0.96787 0.91406 1.20718 0.83110 0.97169 0.93610 1.44081 1.01735 1.69387 1.16306 1.19142 0.97622 1.35653 0.85863 0.91670 1.25032 0.98541 0.99082 0.96959 1.70021 1.25572 1.40081 1.18966 0.86373 0.78995 0.80500 0.80927 1.20864 1.21632 1.21059 1.20875 0.96715 0.94315 0.86044 1.22400 0.94646 1.01419 0.99605 1.21130 0.93940 0.97263 0.82348 0.89803 1.46253 1.65249 1.14323 1.10420 1.18215 0.78451 0.86522 0.83135 1.90785 1.50139 1.15718 1.84659 1.20183 1.01854 0.94421 0.94709 1.21022 0.97527 0.93382 0.99267 1.20884 0.98744 1.00177 0.91260 1.19160 1.00853 0.94012 0.96128 1.23258 0.93106 0.99725 0.86773 1.67389 1.15255 1.08917 1.27742 1.22204 0.96062 0.90015 0.98891 1.22016 1.00224 1.01463 0.92621 1.18153 0.98207 0.93166 0.94373 1.21458 0.94426 1.00481 0.90133 0.93937 0.92500 0.92940 0.88945 0.96121 0.93533 0.96124 0.92496 0.92624 0.92257 0.76977 0.85009 0.84261 0.81761 0.82807 0.84056 0.83525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.03 37.16 0.34 -1.73 16 2 C -0.12 -2.13 2.44 -90.72 -0.22 -2.35 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 4 C 0.18 4.11 4.57 -3.93 -0.02 4.09 16 5 N -0.59 -14.51 3.00 -172.59 -0.52 -15.03 16 6 C -0.25 -6.80 9.59 -15.06 -0.14 -6.95 16 7 H 0.07 1.72 7.89 -52.48 -0.41 1.31 16 8 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 9 N -0.90 -25.63 11.20 55.49 0.62 -25.01 16 10 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.15 3.12 6.52 -3.72 -0.02 3.09 16 15 C -0.14 -2.50 5.65 -26.61 -0.15 -2.65 16 16 C 0.16 2.62 1.88 -67.89 -0.13 2.49 16 17 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 18 N -0.71 -9.56 4.31 -54.69 -0.24 -9.80 16 19 C 0.55 7.86 7.73 -12.31 -0.10 7.77 16 20 O -0.54 -9.59 15.97 5.32 0.08 -9.51 16 21 C -0.11 -1.21 5.87 -104.95 -0.62 -1.83 16 22 C -0.09 -0.80 9.44 -39.55 -0.37 -1.18 16 23 C -0.09 -0.67 9.77 -39.59 -0.39 -1.06 16 24 C -0.10 -0.87 5.75 -106.78 -0.61 -1.49 16 25 C 0.14 1.15 11.04 -16.97 -0.19 0.96 16 26 N -0.49 -4.60 10.29 -13.15 -0.14 -4.73 16 27 C 0.07 0.58 11.07 -17.97 -0.20 0.38 16 28 C -0.14 -1.18 9.88 -39.36 -0.39 -1.57 16 29 C -0.03 -0.33 5.74 -106.83 -0.61 -0.94 16 30 C -0.05 -0.50 9.38 -38.78 -0.36 -0.86 16 31 H 0.04 0.52 7.36 -51.93 -0.38 0.14 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.40 4.22 6.29 -40.82 -0.26 3.96 16 42 H 0.13 0.87 6.34 -52.49 -0.33 0.54 16 43 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 44 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 47 H 0.15 1.57 7.62 -52.49 -0.40 1.17 16 LS Contribution 380.50 15.07 5.73 5.73 Total: -1.00 -32.37 380.50 -10.44 -42.81 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.69 Total: 3.14 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -4.27 Total: -3.85 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.27 Total: -54.57 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.37 -10.44 -42.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943964138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.258 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds