Wall clock time and date at job start Tue Mar 31 2020 22:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.49611 * 2 1 4 4 C 1.52759 * 109.56584 * 240.02660 * 2 1 3 5 5 N 1.46926 * 109.00774 * 185.55384 * 4 2 1 6 6 C 1.36943 * 120.62758 * 233.58797 * 5 4 2 7 7 H 1.08004 * 119.99685 * 152.30589 * 6 5 4 8 8 C 1.38811 * 119.99929 * 332.29737 * 6 5 4 9 9 N 1.31611 * 119.99990 * 342.51084 * 8 6 5 10 10 Si 1.86805 * 119.99866 * 162.78300 * 8 6 5 11 11 H 1.48501 * 109.46856 * 60.00007 * 10 8 6 12 12 H 1.48492 * 109.47015 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47103 * 300.00279 * 10 8 6 14 14 C 1.46923 * 118.74121 * 53.30670 * 5 4 2 15 15 C 1.53185 * 108.77652 * 306.64678 * 14 5 4 16 16 C 1.53041 * 109.31552 * 54.63248 * 15 14 5 17 17 H 1.09003 * 109.45585 * 58.64165 * 16 15 14 18 18 N 1.46501 * 109.46066 * 178.61495 * 16 15 14 19 19 C 1.34773 * 119.99886 * 274.99890 * 18 16 15 20 20 O 1.21550 * 120.00116 * 0.02562 * 19 18 16 21 21 C 1.47889 * 119.99943 * 180.02562 * 19 18 16 22 22 C 1.40597 * 119.72984 * 359.97438 * 21 19 18 23 23 C 1.35844 * 120.95172 * 179.97438 * 22 21 19 24 24 C 1.40498 * 119.88069 * 359.97438 * 23 22 21 25 25 C 1.40484 * 121.83510 * 180.02562 * 24 23 22 26 26 N 1.31214 * 119.93466 * 179.97438 * 25 24 23 27 27 C 1.32550 * 122.80594 * 0.02562 * 26 25 24 28 28 C 1.36224 * 121.84726 * 359.97438 * 27 26 25 29 29 C 1.40755 * 118.67378 * 0.02562 * 28 27 26 30 30 C 1.38537 * 119.72946 * 179.72557 * 21 19 18 31 31 H 1.09003 * 109.47124 * 299.93977 * 1 2 3 32 32 H 1.08997 * 109.47281 * 59.93960 * 1 2 3 33 33 H 1.08997 * 109.46847 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.50461 * 65.67355 * 4 2 1 35 35 H 1.08998 * 109.43426 * 305.38910 * 4 2 1 36 36 H 0.97007 * 119.99945 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.58544 * 66.43706 * 14 5 4 38 38 H 1.09000 * 109.58920 * 186.85226 * 14 5 4 39 39 H 1.09001 * 109.49683 * 174.58184 * 15 14 5 40 40 H 1.09003 * 109.49731 * 294.64570 * 15 14 5 41 41 H 0.96998 * 119.99880 * 95.00332 * 18 16 15 42 42 H 1.07997 * 119.52313 * 359.95969 * 22 21 19 43 43 H 1.08002 * 120.06242 * 180.02562 * 23 22 21 44 44 H 1.07998 * 120.03544 * 359.96585 * 25 24 23 45 45 H 1.08001 * 119.07770 * 180.02562 * 27 26 25 46 46 H 1.07994 * 120.65886 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.36503 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7191 -1.2469 5 7 3.5046 -0.8295 -1.1692 6 6 4.2936 -0.3791 -2.1939 7 1 5.3003 -0.0433 -1.9928 8 6 3.7997 -0.3543 -3.4909 9 7 2.7352 -1.0624 -3.8033 10 14 4.6503 0.6782 -4.7947 11 1 6.0530 0.2173 -4.9537 12 1 3.9321 0.5344 -6.0863 13 1 4.6419 2.1042 -4.3802 14 6 4.1053 -1.4266 0.0313 15 6 3.5708 -0.6946 1.2663 16 6 2.0408 -0.7226 1.2486 17 1 1.6968 -1.7569 1.2357 18 7 1.5265 -0.0521 2.4454 19 6 1.3972 -0.7374 3.5986 20 8 1.7076 -1.9116 3.6460 21 6 0.8775 -0.0606 4.8066 22 6 0.5206 1.2979 4.7455 23 6 0.0402 1.9439 5.8397 24 6 -0.1056 1.2515 7.0535 25 6 -0.5986 1.8787 8.2099 26 7 -0.7200 1.1961 9.3239 27 6 -0.3942 -0.0851 9.4202 28 6 0.0927 -0.7848 8.3576 29 6 0.2515 -0.1203 7.1270 30 6 0.7414 -0.7719 5.9876 31 1 -0.3633 0.5129 0.8905 32 1 -0.3634 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7646 -0.1502 -2.1344 35 1 1.6021 -1.7153 -1.2969 36 1 2.3898 -1.0448 -4.7096 37 1 3.8376 -2.4818 0.0876 38 1 5.1896 -1.3246 -0.0132 39 1 3.9334 -1.1890 2.1675 40 1 3.9164 0.3392 1.2543 41 1 1.2790 0.8850 2.4076 42 1 0.6301 1.8357 3.8154 43 1 -0.2300 2.9877 5.7766 44 1 -0.8773 2.9218 8.1820 45 1 -0.5190 -0.5887 10.3674 46 1 0.3525 -1.8282 8.4577 47 1 1.0131 -1.8162 6.0304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943964138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:29 Heat of formation + Delta-G solvation = 15.507158 kcal Electronic energy + Delta-G solvation = -28627.235184 eV Core-core repulsion = 24774.139853 eV Total energy + Delta-G solvation = -3853.095331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.97063 -41.04472 -39.34398 -37.93166 -36.22553 -34.21492 -33.92602 -33.53401 -32.45233 -31.00446 -30.62868 -27.56846 -27.24886 -25.72984 -24.78997 -23.93095 -23.16431 -22.52626 -21.84979 -21.02393 -19.38696 -18.78201 -18.54272 -17.77710 -17.18230 -17.04203 -16.67488 -16.13930 -15.91569 -15.64940 -15.52426 -15.28341 -15.10424 -14.72637 -14.68505 -14.62051 -14.60308 -14.21575 -13.81215 -13.54048 -13.44044 -13.21110 -13.02705 -12.92587 -12.86562 -12.55133 -12.45310 -12.10644 -12.05818 -11.85471 -11.75501 -11.59230 -11.30941 -11.25820 -11.04737 -10.55504 -10.51556 -10.26962 -9.97892 -9.11548 -8.72002 -7.87859 -5.33207 -0.82779 -0.34087 0.81452 1.47957 1.49065 1.50409 1.57773 2.04491 2.32779 2.51866 3.06208 3.26970 3.47576 3.51155 3.53728 3.64223 3.74857 3.76456 3.83685 4.00418 4.01348 4.08746 4.19325 4.30140 4.33120 4.56253 4.59237 4.65617 4.68520 4.72803 4.75906 4.83673 4.92722 4.93870 4.97884 5.04198 5.06869 5.12942 5.21477 5.26278 5.29764 5.33945 5.48997 5.50085 5.62064 5.65337 5.71772 5.73523 6.38140 6.50956 6.96428 7.14002 7.15135 7.83473 8.36264 9.18939 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029418 B = 0.002148 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.580814 B =13032.189758 C =13306.656837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 H 0.077 0.923 4 C 0.187 3.813 5 N -0.610 5.610 6 C -0.264 4.264 7 H 0.067 0.933 8 C -0.049 4.049 9 N -0.934 5.934 10 Si 0.968 3.032 11 H -0.278 1.278 12 H -0.295 1.295 13 H -0.274 1.274 14 C 0.144 3.856 15 C -0.126 4.126 16 C 0.169 3.831 17 H 0.057 0.943 18 N -0.698 5.698 19 C 0.552 3.448 20 O -0.579 6.579 21 C -0.118 4.118 22 C -0.101 4.101 23 C -0.074 4.074 24 C -0.110 4.110 25 C 0.146 3.854 26 N -0.508 5.508 27 C 0.066 3.934 28 C -0.153 4.153 29 C -0.050 4.050 30 C -0.058 4.058 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.064 0.936 35 H -0.010 1.010 36 H 0.251 0.749 37 H 0.006 0.994 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.413 0.587 42 H 0.156 0.844 43 H 0.180 0.820 44 H 0.199 0.801 45 H 0.175 0.825 46 H 0.155 0.845 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.883 9.262 23.683 26.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 H 0.096 0.904 4 C 0.061 3.939 5 N -0.333 5.333 6 C -0.394 4.394 7 H 0.085 0.915 8 C -0.245 4.245 9 N -0.580 5.580 10 Si 0.796 3.204 11 H -0.204 1.204 12 H -0.221 1.221 13 H -0.200 1.200 14 C 0.018 3.982 15 C -0.166 4.166 16 C 0.064 3.936 17 H 0.075 0.925 18 N -0.349 5.349 19 C 0.340 3.660 20 O -0.460 6.460 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.093 4.093 24 C -0.112 4.112 25 C -0.025 4.025 26 N -0.216 5.216 27 C -0.076 4.076 28 C -0.173 4.173 29 C -0.055 4.055 30 C -0.077 4.077 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.008 0.992 36 H 0.060 0.940 37 H 0.024 0.976 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.252 0.748 42 H 0.173 0.827 43 H 0.197 0.803 44 H 0.215 0.785 45 H 0.192 0.808 46 H 0.173 0.827 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.021 8.683 24.360 27.389 hybrid contribution 0.812 -0.473 -1.931 2.148 sum -8.209 8.211 22.429 25.256 Atomic orbital electron populations 1.21691 0.93512 1.01499 1.02417 1.21823 0.96560 1.00071 0.94287 0.90436 1.20531 0.82468 0.95690 0.95217 1.44352 1.02335 1.69833 1.16755 1.19472 0.98032 1.35227 0.86709 0.91497 1.25797 0.99460 1.00279 0.98917 1.70186 1.27137 1.41605 1.19059 0.85333 0.77858 0.79185 0.78003 1.20409 1.22094 1.20029 1.20961 0.96900 0.93856 0.86493 1.22199 0.95337 1.01343 0.97732 1.20701 0.93206 0.96171 0.83502 0.92471 1.45919 1.64885 1.15009 1.09119 1.18685 0.77459 0.85998 0.83877 1.90766 1.52065 1.17814 1.85378 1.20002 1.03279 0.95792 0.93147 1.21221 0.97729 0.92057 1.00876 1.21298 0.96474 1.01692 0.89824 1.19457 1.00812 0.93675 0.97258 1.23813 0.91787 1.00989 0.85909 1.67455 1.16079 1.09518 1.28597 1.22577 0.95370 0.89936 0.99709 1.22216 1.00421 1.02324 0.92294 1.18332 0.98605 0.94138 0.94395 1.21438 0.95255 1.00242 0.90808 0.90458 0.92310 0.94002 0.91779 0.99165 0.94013 0.97626 0.92342 0.92204 0.91225 0.74846 0.82671 0.80309 0.78472 0.80776 0.82690 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 9.03 71.98 0.65 -3.12 16 2 C -0.11 -3.66 2.44 -10.86 -0.03 -3.69 16 3 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 4 C 0.19 8.79 4.57 86.22 0.39 9.19 16 5 N -0.61 -30.54 3.00 -699.94 -2.10 -32.64 16 6 C -0.26 -14.39 9.59 84.03 0.81 -13.58 16 7 H 0.07 3.54 7.89 -2.91 -0.02 3.52 16 8 C -0.05 -2.70 4.91 84.86 0.42 -2.28 16 9 N -0.93 -54.64 11.20 21.65 0.24 -54.39 16 10 Si 0.97 44.04 29.59 68.60 2.03 46.07 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 14 C 0.14 6.23 6.52 86.36 0.56 6.79 16 15 C -0.13 -4.44 5.65 30.67 0.17 -4.27 16 16 C 0.17 5.59 1.88 45.02 0.08 5.68 16 17 H 0.06 2.24 7.58 -2.39 -0.02 2.23 16 18 N -0.70 -17.54 4.31 -445.23 -1.92 -19.46 16 19 C 0.55 15.37 7.73 86.80 0.67 16.05 16 20 O -0.58 -21.25 15.97 -3.87 -0.06 -21.31 16 21 C -0.12 -2.50 5.87 -20.07 -0.12 -2.62 16 22 C -0.10 -1.39 9.44 22.29 0.21 -1.18 16 23 C -0.07 -0.78 9.77 22.27 0.22 -0.57 16 24 C -0.11 -1.62 5.75 -21.26 -0.12 -1.75 16 25 C 0.15 1.88 11.04 85.33 0.94 2.82 16 26 N -0.51 -8.48 10.29 -195.51 -2.01 -10.49 16 27 C 0.07 0.98 11.07 84.12 0.93 1.91 16 28 C -0.15 -2.37 9.88 22.42 0.22 -2.15 16 29 C -0.05 -0.91 5.74 -21.30 -0.12 -1.03 16 30 C -0.06 -1.24 9.38 22.79 0.21 -1.03 16 31 H 0.08 1.65 7.36 -2.39 -0.02 1.64 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 3.37 6.04 -2.39 -0.01 3.36 16 35 H -0.01 -0.51 8.14 -2.39 -0.02 -0.52 16 36 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 37 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 38 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.41 7.43 6.29 -92.71 -0.58 6.85 16 42 H 0.16 1.33 6.34 -2.91 -0.02 1.31 16 43 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 44 H 0.20 1.01 8.06 -2.91 -0.02 0.99 16 45 H 0.18 1.66 8.06 -2.91 -0.02 1.63 16 46 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 47 H 0.14 3.07 7.62 -2.91 -0.02 3.04 16 Total: -1.00 -73.29 380.50 2.69 -70.60 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.40 Total: 16.46 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 6.10 Total: 5.16 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -5.79 Total: -116.98 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.06 Total: -21.31 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -73.29 2.69 -70.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943964138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.107 kcal (2) G-P(sol) polarization free energy of solvation -73.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds