Wall clock time and date at job start Tue Mar 31 2020 22:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09008 * 109.52137 * 2 1 4 4 C 1.53183 * 109.49742 * 239.92075 * 2 1 3 5 5 N 1.46922 * 108.77669 * 185.41361 * 4 2 1 6 6 C 1.36947 * 120.63094 * 233.58793 * 5 4 2 7 7 H 1.07994 * 120.00045 * 27.69214 * 6 5 4 8 8 C 1.38804 * 119.99831 * 207.69554 * 6 5 4 9 9 N 1.31623 * 120.00455 * 17.35524 * 8 6 5 10 10 Si 1.86798 * 120.00012 * 197.35538 * 8 6 5 11 11 H 1.48495 * 109.47320 * 89.99861 * 10 8 6 12 12 H 1.48497 * 109.47542 * 210.00059 * 10 8 6 13 13 H 1.48504 * 109.47250 * 330.00133 * 10 8 6 14 14 C 1.46929 * 118.74097 * 53.60688 * 5 4 2 15 15 C 1.53191 * 108.77136 * 306.39230 * 14 5 4 16 16 C 1.53039 * 109.31468 * 54.63560 * 15 14 5 17 17 H 1.09001 * 109.45982 * 58.63898 * 16 15 14 18 18 N 1.46496 * 109.46430 * 178.61264 * 16 15 14 19 19 C 1.34787 * 119.99702 * 275.00224 * 18 16 15 20 20 O 1.21553 * 119.99991 * 359.97438 * 19 18 16 21 21 C 1.47778 * 119.99455 * 179.72248 * 19 18 16 22 22 C 1.40648 * 119.70122 * 0.02562 * 21 19 18 23 23 C 1.35847 * 120.87417 * 179.75441 * 22 21 19 24 24 C 1.40399 * 119.84693 * 0.51679 * 23 22 21 25 25 C 1.40639 * 121.98434 * 179.76297 * 24 23 22 26 26 C 1.36216 * 118.73025 * 179.97438 * 25 24 23 27 27 N 1.32592 * 121.90703 * 0.02562 * 26 25 24 28 28 C 1.31241 * 122.73956 * 359.97438 * 27 26 25 29 29 C 1.40549 * 119.88296 * 0.02562 * 28 27 26 30 30 C 1.38566 * 119.69751 * 180.27150 * 21 19 18 31 31 H 1.09002 * 109.47187 * 299.91914 * 1 2 3 32 32 H 1.09001 * 109.47142 * 59.91715 * 1 2 3 33 33 H 1.09001 * 109.46968 * 179.91788 * 1 2 3 34 34 H 1.09001 * 109.59255 * 65.62458 * 4 2 1 35 35 H 1.08999 * 109.70472 * 305.26788 * 4 2 1 36 36 H 0.97004 * 120.00150 * 180.02562 * 9 8 6 37 37 H 1.08995 * 109.58718 * 186.60830 * 14 5 4 38 38 H 1.08993 * 109.58323 * 66.17782 * 14 5 4 39 39 H 1.08998 * 109.50319 * 294.68456 * 15 14 5 40 40 H 1.08997 * 109.52185 * 174.59942 * 15 14 5 41 41 H 0.96994 * 120.00234 * 94.99551 * 18 16 15 42 42 H 1.07995 * 119.56364 * 359.97438 * 22 21 19 43 43 H 1.08007 * 120.07788 * 180.23490 * 23 22 21 44 44 H 1.08005 * 120.63402 * 359.96053 * 25 24 23 45 45 H 1.08003 * 119.04366 * 179.97438 * 26 25 24 46 46 H 1.07990 * 120.06149 * 180.02562 * 28 27 26 47 47 H 1.08003 * 120.34082 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7237 -1.2495 5 7 3.5046 -0.8291 -1.1696 6 6 4.2936 -0.3792 -2.1945 7 1 3.9468 0.4207 -2.8319 8 6 5.5390 -0.9513 -2.4141 9 7 5.8279 -2.1220 -1.8864 10 14 6.8053 -0.0597 -3.4587 11 1 7.6355 0.8143 -2.5915 12 1 7.6752 -1.0534 -4.1376 13 1 6.1118 0.7689 -4.4774 14 6 4.1054 -1.4267 0.0308 15 6 3.5709 -0.6949 1.2660 16 6 2.0409 -0.7230 1.2484 17 1 1.6968 -1.7572 1.2351 18 7 1.5265 -0.0529 2.4452 19 6 1.3973 -0.7386 3.5984 20 8 1.7070 -1.9131 3.6451 21 6 0.8842 -0.0610 4.8073 22 6 0.5322 1.2994 4.7473 23 6 0.0535 1.9446 5.8428 24 6 -0.0840 1.2527 7.0567 25 6 -0.5699 1.8774 8.2192 26 6 -0.6768 1.1428 9.3614 27 7 -0.3362 -0.1379 9.4054 28 6 0.1242 -0.7862 8.3613 29 6 0.2732 -0.1196 7.1329 30 6 0.7591 -0.7704 5.9910 31 1 -0.3634 0.5126 0.8907 32 1 -0.3633 0.5151 -0.8892 33 1 -0.3633 -1.0277 -0.0015 34 1 1.7638 -0.1579 -2.1389 35 1 1.6055 -1.7215 -1.3005 36 1 6.6984 -2.5216 -2.0397 37 1 5.1896 -1.3245 -0.0138 38 1 3.8376 -2.4817 0.0867 39 1 3.9159 0.3389 1.2541 40 1 3.9334 -1.1891 2.1673 41 1 1.2791 0.8842 2.4079 42 1 0.6406 1.8373 3.8171 43 1 -0.2164 2.9885 5.7812 44 1 -0.8527 2.9197 8.2068 45 1 -1.0490 1.6175 10.2572 46 1 0.3882 -1.8299 8.4458 47 1 1.0348 -1.8138 6.0335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943990016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:15 Heat of formation + Delta-G solvation = 34.643026 kcal Electronic energy + Delta-G solvation = -28616.081418 eV Core-core repulsion = 24763.815881 eV Total energy + Delta-G solvation = -3852.265537 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.24051 -39.89480 -37.96793 -37.05005 -34.64069 -33.34411 -32.86313 -31.65818 -31.15484 -30.17667 -29.62734 -26.02441 -25.62603 -24.41663 -24.25441 -22.70369 -22.14780 -21.03653 -20.72711 -19.57441 -18.24504 -18.05344 -17.07431 -16.72913 -16.05521 -15.77537 -15.38627 -15.00584 -14.81074 -14.47039 -14.38204 -14.13080 -13.94785 -13.87324 -13.59470 -13.51103 -13.29355 -12.83843 -12.67704 -12.36960 -12.27878 -12.07431 -11.63452 -11.51975 -11.33595 -11.08604 -10.83462 -10.69019 -10.58386 -10.38255 -10.23488 -10.09683 -9.98844 -9.83215 -9.80940 -9.51416 -9.49119 -8.76810 -8.48380 -8.41373 -6.71176 -5.80110 -3.23148 -0.12765 0.34601 1.45108 2.30338 3.19211 3.24312 3.36973 3.43608 3.44951 3.75364 4.01275 4.13487 4.28185 4.38430 4.47475 4.56150 4.64276 4.77475 4.82699 5.09416 5.19300 5.27449 5.29848 5.37511 5.39444 5.46675 5.52333 5.57702 5.59525 5.86158 5.89695 5.93994 5.95202 6.06950 6.20732 6.21643 6.24045 6.31272 6.34843 6.41473 6.57764 6.64431 6.75485 6.88591 6.93178 7.35227 7.56779 7.60692 7.67071 7.78053 8.28353 8.42936 9.18991 9.82336 10.38613 11.28318 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023735 B = 0.002200 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.386081 B =12725.753540 C =12974.442161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 H 0.071 0.929 4 C 0.155 3.845 5 N -0.593 5.593 6 C -0.255 4.255 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.901 5.901 10 Si 0.903 3.097 11 H -0.288 1.288 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.173 3.827 15 C -0.147 4.147 16 C 0.157 3.843 17 H 0.084 0.916 18 N -0.715 5.715 19 C 0.552 3.448 20 O -0.534 6.534 21 C -0.131 4.131 22 C -0.070 4.070 23 C -0.119 4.119 24 C -0.010 4.010 25 C -0.160 4.160 26 C 0.082 3.918 27 N -0.493 5.493 28 C 0.159 3.841 29 C -0.123 4.123 30 C -0.018 4.018 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.021 0.979 36 H 0.254 0.746 37 H 0.090 0.910 38 H 0.021 0.979 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.393 0.607 42 H 0.131 0.869 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.154 0.846 46 H 0.168 0.832 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.491 9.198 18.286 25.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 H 0.089 0.911 4 C 0.027 3.973 5 N -0.315 5.315 6 C -0.384 4.384 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.545 5.545 10 Si 0.733 3.267 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.204 1.204 14 C 0.047 3.953 15 C -0.188 4.188 16 C 0.054 3.946 17 H 0.102 0.898 18 N -0.365 5.365 19 C 0.338 3.662 20 O -0.411 6.411 21 C -0.134 4.134 22 C -0.089 4.089 23 C -0.137 4.137 24 C -0.015 4.015 25 C -0.180 4.180 26 C -0.061 4.061 27 N -0.201 5.201 28 C -0.012 4.012 29 C -0.125 4.125 30 C -0.039 4.039 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.228 0.772 42 H 0.149 0.851 43 H 0.155 0.845 44 H 0.157 0.843 45 H 0.171 0.829 46 H 0.185 0.815 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.246 7.940 19.100 25.116 hybrid contribution 0.693 1.476 -1.321 2.099 sum -13.553 9.416 17.779 24.258 Atomic orbital electron populations 1.21780 0.95780 1.01664 1.00800 1.21977 0.94504 1.00598 0.96486 0.91058 1.20886 0.86009 0.96658 0.93701 1.44113 0.99274 1.71450 1.16645 1.19175 0.98229 1.12364 1.08639 0.91599 1.25054 0.99942 0.95347 0.99293 1.70040 1.21898 1.14519 1.48004 0.86289 0.81669 0.78898 0.79888 1.21470 1.21762 1.20445 1.20769 0.99488 0.93115 0.81938 1.22583 0.93748 1.01580 1.00866 1.21114 0.94639 0.96941 0.81922 0.89806 1.46235 1.65533 1.14179 1.10555 1.18156 0.78376 0.86539 0.83081 1.90797 1.49981 1.15717 1.84644 1.20108 1.03940 0.94453 0.94899 1.21075 0.95552 0.93297 0.99026 1.20856 1.00985 1.00274 0.91538 1.18299 0.95833 0.92845 0.94524 1.21931 1.01591 1.01435 0.93057 1.22262 0.96183 0.89764 0.97849 1.67492 1.11160 1.09969 1.31450 1.23354 0.91495 0.99814 0.86586 1.19022 1.03118 0.94352 0.96035 1.21486 0.92130 1.00417 0.89852 0.93556 0.92678 0.92819 0.92367 0.96138 0.93555 0.89171 0.96088 0.92645 0.92731 0.77171 0.85081 0.84549 0.84277 0.82895 0.81511 0.83258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.03 37.16 0.34 -1.47 16 2 C -0.11 -1.82 2.46 -90.50 -0.22 -2.04 16 3 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 4 C 0.15 3.10 5.80 -3.72 -0.02 3.08 16 5 N -0.59 -14.51 3.00 -172.33 -0.52 -15.03 16 6 C -0.25 -6.84 9.59 -15.06 -0.14 -6.99 16 7 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 8 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 9 N -0.90 -26.09 11.19 55.49 0.62 -25.47 16 10 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 C 0.17 4.15 5.31 -3.71 -0.02 4.13 16 15 C -0.15 -2.88 5.65 -26.61 -0.15 -3.03 16 16 C 0.16 2.63 1.88 -67.89 -0.13 2.50 16 17 H 0.08 1.60 7.57 -51.93 -0.39 1.20 16 18 N -0.71 -9.58 4.31 -54.73 -0.24 -9.82 16 19 C 0.55 7.96 7.73 -12.36 -0.10 7.87 16 20 O -0.53 -9.74 15.96 5.32 0.08 -9.65 16 21 C -0.13 -1.48 5.87 -104.97 -0.62 -2.10 16 22 C -0.07 -0.61 9.44 -39.53 -0.37 -0.98 16 23 C -0.12 -0.92 9.77 -39.63 -0.39 -1.31 16 24 C -0.01 -0.09 5.75 -106.73 -0.61 -0.70 16 25 C -0.16 -1.18 9.87 -39.40 -0.39 -1.57 16 26 C 0.08 0.66 11.07 -17.95 -0.20 0.46 16 27 N -0.49 -4.86 10.30 -13.12 -0.14 -4.99 16 28 C 0.16 1.44 11.05 -16.93 -0.19 1.25 16 29 C -0.12 -1.20 5.74 -106.87 -0.61 -1.82 16 30 C -0.02 -0.19 9.37 -38.75 -0.36 -0.55 16 31 H 0.05 0.50 7.36 -51.93 -0.38 0.12 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.09 2.42 6.04 -51.93 -0.31 2.11 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.39 4.11 6.29 -40.82 -0.26 3.86 16 42 H 0.13 0.86 6.34 -52.49 -0.33 0.53 16 43 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 44 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 45 H 0.15 0.81 8.06 -52.48 -0.42 0.38 16 46 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 47 H 0.15 1.53 7.61 -52.48 -0.40 1.13 16 LS Contribution 380.50 15.07 5.73 5.73 Total: -1.00 -32.81 380.50 -10.44 -43.25 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.69 Total: 2.81 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -4.27 Total: -3.28 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.27 Total: -55.31 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.81 -10.44 -43.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943990016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.891 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds