Wall clock time and date at job start Tue Mar 31 2020 22:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09008 * 109.52137 * 2 1 4 4 C 1.53183 * 109.49742 * 239.92075 * 2 1 3 5 5 N 1.46922 * 108.77669 * 185.41361 * 4 2 1 6 6 C 1.36947 * 120.63094 * 233.58793 * 5 4 2 7 7 H 1.07994 * 120.00045 * 27.69214 * 6 5 4 8 8 C 1.38804 * 119.99831 * 207.69554 * 6 5 4 9 9 N 1.31623 * 120.00455 * 17.35524 * 8 6 5 10 10 Si 1.86798 * 120.00012 * 197.35538 * 8 6 5 11 11 H 1.48495 * 109.47320 * 89.99861 * 10 8 6 12 12 H 1.48497 * 109.47542 * 210.00059 * 10 8 6 13 13 H 1.48504 * 109.47250 * 330.00133 * 10 8 6 14 14 C 1.46929 * 118.74097 * 53.60688 * 5 4 2 15 15 C 1.53191 * 108.77136 * 306.39230 * 14 5 4 16 16 C 1.53039 * 109.31468 * 54.63560 * 15 14 5 17 17 H 1.09001 * 109.45982 * 58.63898 * 16 15 14 18 18 N 1.46496 * 109.46430 * 178.61264 * 16 15 14 19 19 C 1.34787 * 119.99702 * 275.00224 * 18 16 15 20 20 O 1.21553 * 119.99991 * 359.97438 * 19 18 16 21 21 C 1.47778 * 119.99455 * 179.72248 * 19 18 16 22 22 C 1.40648 * 119.70122 * 0.02562 * 21 19 18 23 23 C 1.35847 * 120.87417 * 179.75441 * 22 21 19 24 24 C 1.40399 * 119.84693 * 0.51679 * 23 22 21 25 25 C 1.40639 * 121.98434 * 179.76297 * 24 23 22 26 26 C 1.36216 * 118.73025 * 179.97438 * 25 24 23 27 27 N 1.32592 * 121.90703 * 0.02562 * 26 25 24 28 28 C 1.31241 * 122.73956 * 359.97438 * 27 26 25 29 29 C 1.40549 * 119.88296 * 0.02562 * 28 27 26 30 30 C 1.38566 * 119.69751 * 180.27150 * 21 19 18 31 31 H 1.09002 * 109.47187 * 299.91914 * 1 2 3 32 32 H 1.09001 * 109.47142 * 59.91715 * 1 2 3 33 33 H 1.09001 * 109.46968 * 179.91788 * 1 2 3 34 34 H 1.09001 * 109.59255 * 65.62458 * 4 2 1 35 35 H 1.08999 * 109.70472 * 305.26788 * 4 2 1 36 36 H 0.97004 * 120.00150 * 180.02562 * 9 8 6 37 37 H 1.08995 * 109.58718 * 186.60830 * 14 5 4 38 38 H 1.08993 * 109.58323 * 66.17782 * 14 5 4 39 39 H 1.08998 * 109.50319 * 294.68456 * 15 14 5 40 40 H 1.08997 * 109.52185 * 174.59942 * 15 14 5 41 41 H 0.96994 * 120.00234 * 94.99551 * 18 16 15 42 42 H 1.07995 * 119.56364 * 359.97438 * 22 21 19 43 43 H 1.08007 * 120.07788 * 180.23490 * 23 22 21 44 44 H 1.08005 * 120.63402 * 359.96053 * 25 24 23 45 45 H 1.08003 * 119.04366 * 179.97438 * 26 25 24 46 46 H 1.07990 * 120.06149 * 180.02562 * 28 27 26 47 47 H 1.08003 * 120.34082 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7237 -1.2495 5 7 3.5046 -0.8291 -1.1696 6 6 4.2936 -0.3792 -2.1945 7 1 3.9468 0.4207 -2.8319 8 6 5.5390 -0.9513 -2.4141 9 7 5.8279 -2.1220 -1.8864 10 14 6.8053 -0.0597 -3.4587 11 1 7.6355 0.8143 -2.5915 12 1 7.6752 -1.0534 -4.1376 13 1 6.1118 0.7689 -4.4774 14 6 4.1054 -1.4267 0.0308 15 6 3.5709 -0.6949 1.2660 16 6 2.0409 -0.7230 1.2484 17 1 1.6968 -1.7572 1.2351 18 7 1.5265 -0.0529 2.4452 19 6 1.3973 -0.7386 3.5984 20 8 1.7070 -1.9131 3.6451 21 6 0.8842 -0.0610 4.8073 22 6 0.5322 1.2994 4.7473 23 6 0.0535 1.9446 5.8428 24 6 -0.0840 1.2527 7.0567 25 6 -0.5699 1.8774 8.2192 26 6 -0.6768 1.1428 9.3614 27 7 -0.3362 -0.1379 9.4054 28 6 0.1242 -0.7862 8.3613 29 6 0.2732 -0.1196 7.1329 30 6 0.7591 -0.7704 5.9910 31 1 -0.3634 0.5126 0.8907 32 1 -0.3633 0.5151 -0.8892 33 1 -0.3633 -1.0277 -0.0015 34 1 1.7638 -0.1579 -2.1389 35 1 1.6055 -1.7215 -1.3005 36 1 6.6984 -2.5216 -2.0397 37 1 5.1896 -1.3245 -0.0138 38 1 3.8376 -2.4817 0.0867 39 1 3.9159 0.3389 1.2541 40 1 3.9334 -1.1891 2.1673 41 1 1.2791 0.8842 2.4079 42 1 0.6406 1.8373 3.8171 43 1 -0.2164 2.9885 5.7812 44 1 -0.8527 2.9197 8.2068 45 1 -1.0490 1.6175 10.2572 46 1 0.3882 -1.8299 8.4458 47 1 1.0348 -1.8138 6.0335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943990016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:13 Heat of formation + Delta-G solvation = 15.030110 kcal Electronic energy + Delta-G solvation = -28616.931897 eV Core-core repulsion = 24763.815881 eV Total energy + Delta-G solvation = -3853.116017 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.96840 -41.02923 -39.32631 -37.93932 -36.25471 -34.31778 -34.00166 -32.94454 -32.54214 -31.37382 -30.66335 -27.42105 -27.18451 -25.57466 -24.95504 -23.85985 -23.16240 -22.65085 -21.87070 -21.03538 -19.28848 -18.78207 -18.60084 -17.86213 -17.12731 -16.77803 -16.70045 -16.10950 -16.00004 -15.63064 -15.59236 -15.25927 -15.08883 -14.85996 -14.71616 -14.55668 -14.53242 -14.28145 -14.15852 -13.60705 -13.10991 -13.04545 -12.98224 -12.86187 -12.72518 -12.59747 -12.31890 -12.31653 -12.07644 -12.02415 -11.67325 -11.58436 -11.33136 -11.23748 -11.02362 -10.57640 -10.50910 -10.25450 -10.00286 -9.10983 -8.72503 -7.87769 -5.34051 -0.81749 -0.33017 0.77168 1.47500 1.48855 1.51182 1.57869 2.07036 2.33274 2.51112 3.05564 3.27567 3.44688 3.49392 3.59671 3.65816 3.66704 3.75878 3.87018 4.00541 4.03067 4.06009 4.16089 4.31267 4.37759 4.59873 4.64643 4.67859 4.71553 4.72093 4.79407 4.85592 4.86815 4.92791 4.94089 5.01839 5.10823 5.13450 5.20299 5.29464 5.30959 5.38694 5.50289 5.51860 5.61540 5.63541 5.69219 5.71895 6.37480 6.52962 6.94954 7.12426 7.18811 7.83426 8.36106 9.19137 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023735 B = 0.002200 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.386081 B =12725.753540 C =12974.442161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.099 4.099 3 H 0.083 0.917 4 C 0.149 3.851 5 N -0.609 5.609 6 C -0.259 4.259 7 H 0.075 0.925 8 C -0.055 4.055 9 N -0.938 5.938 10 Si 0.969 3.031 11 H -0.286 1.286 12 H -0.299 1.299 13 H -0.264 1.264 14 C 0.182 3.818 15 C -0.132 4.132 16 C 0.169 3.831 17 H 0.057 0.943 18 N -0.699 5.699 19 C 0.552 3.448 20 O -0.581 6.581 21 C -0.144 4.144 22 C -0.074 4.074 23 C -0.105 4.105 24 C -0.024 4.024 25 C -0.151 4.151 26 C 0.070 3.930 27 N -0.515 5.515 28 C 0.147 3.853 29 C -0.135 4.135 30 C -0.026 4.026 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.009 0.991 36 H 0.249 0.751 37 H 0.056 0.944 38 H -0.012 1.012 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.413 0.587 42 H 0.156 0.844 43 H 0.173 0.827 44 H 0.174 0.826 45 H 0.179 0.821 46 H 0.180 0.820 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.598 13.215 19.149 28.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.120 4.120 3 H 0.101 0.899 4 C 0.023 3.977 5 N -0.332 5.332 6 C -0.389 4.389 7 H 0.092 0.908 8 C -0.250 4.250 9 N -0.585 5.585 10 Si 0.797 3.203 11 H -0.213 1.213 12 H -0.226 1.226 13 H -0.188 1.188 14 C 0.056 3.944 15 C -0.172 4.172 16 C 0.065 3.935 17 H 0.075 0.925 18 N -0.351 5.351 19 C 0.340 3.660 20 O -0.462 6.462 21 C -0.147 4.147 22 C -0.094 4.094 23 C -0.123 4.123 24 C -0.029 4.029 25 C -0.171 4.171 26 C -0.073 4.073 27 N -0.223 5.223 28 C -0.024 4.024 29 C -0.137 4.137 30 C -0.047 4.047 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.027 0.973 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.006 0.994 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.251 0.749 42 H 0.174 0.826 43 H 0.191 0.809 44 H 0.192 0.808 45 H 0.196 0.804 46 H 0.197 0.803 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.405 12.014 19.970 28.500 hybrid contribution 1.276 0.210 -1.490 1.973 sum -15.128 12.224 18.480 26.829 Atomic orbital electron populations 1.21729 0.92668 1.01864 1.02993 1.21767 0.96877 0.99986 0.93351 0.89858 1.21091 0.83434 0.96786 0.96412 1.44358 1.01164 1.71377 1.16307 1.19567 0.98624 1.12074 1.08676 0.90774 1.25870 1.02002 0.96035 1.01139 1.70215 1.21959 1.16244 1.50045 0.85235 0.79013 0.77537 0.78482 1.21257 1.22563 1.18844 1.20470 0.97708 0.92068 0.84196 1.22326 0.96022 1.00919 0.97958 1.20694 0.92492 0.96326 0.84014 0.92493 1.45892 1.65010 1.14944 1.09219 1.18670 0.77341 0.86012 0.83933 1.90778 1.52061 1.17989 1.85408 1.19909 1.05614 0.95846 0.93315 1.21269 0.95544 0.91931 1.00635 1.21237 0.99113 1.01664 0.90278 1.18680 0.95760 0.92557 0.95901 1.22287 1.00047 1.02862 0.91868 1.22777 0.95887 0.89292 0.99328 1.67519 1.11689 1.11258 1.31813 1.23592 0.91703 1.00601 0.86481 1.19095 1.03633 0.95267 0.95737 1.21484 0.92563 1.00273 0.90411 0.90851 0.90994 0.93684 0.91532 0.97336 0.94204 0.92565 0.99387 0.91833 0.93602 0.74851 0.82614 0.80919 0.80820 0.80412 0.80333 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.03 71.98 0.65 -2.36 16 2 C -0.10 -2.97 2.46 -10.72 -0.03 -3.00 16 3 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 4 C 0.15 5.92 5.80 86.36 0.50 6.42 16 5 N -0.61 -30.44 3.00 -699.14 -2.09 -32.54 16 6 C -0.26 -14.06 9.59 84.03 0.81 -13.25 16 7 H 0.07 3.83 7.89 -2.91 -0.02 3.81 16 8 C -0.06 -3.11 4.91 84.86 0.42 -2.69 16 9 N -0.94 -56.72 11.19 21.65 0.24 -56.48 16 10 Si 0.97 44.77 29.59 68.60 2.03 46.80 16 11 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 13 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 14 C 0.18 9.20 5.31 86.36 0.46 9.66 16 15 C -0.13 -5.28 5.65 30.67 0.17 -5.10 16 16 C 0.17 5.64 1.88 45.02 0.08 5.72 16 17 H 0.06 2.24 7.57 -2.39 -0.02 2.23 16 18 N -0.70 -17.66 4.31 -445.35 -1.92 -19.58 16 19 C 0.55 15.79 7.73 86.77 0.67 16.46 16 20 O -0.58 -22.13 15.96 -3.88 -0.06 -22.19 16 21 C -0.14 -3.10 5.87 -20.09 -0.12 -3.22 16 22 C -0.07 -1.05 9.44 22.30 0.21 -0.84 16 23 C -0.11 -1.20 9.77 22.24 0.22 -0.98 16 24 C -0.02 -0.36 5.75 -21.23 -0.12 -0.48 16 25 C -0.15 -1.67 9.87 22.39 0.22 -1.45 16 26 C 0.07 0.93 11.07 84.11 0.93 1.87 16 27 N -0.51 -9.55 10.30 -195.42 -2.01 -11.57 16 28 C 0.15 2.62 11.05 85.34 0.94 3.56 16 29 C -0.14 -2.52 5.74 -21.32 -0.12 -2.64 16 30 C -0.03 -0.56 9.37 22.81 0.21 -0.35 16 31 H 0.07 1.27 7.36 -2.39 -0.02 1.26 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 2.51 7.93 -2.39 -0.02 2.49 16 35 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.06 3.20 6.04 -2.39 -0.01 3.19 16 38 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 39 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.41 7.21 6.29 -92.71 -0.58 6.63 16 42 H 0.16 1.32 6.34 -2.91 -0.02 1.31 16 43 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 44 H 0.17 0.65 8.06 -2.91 -0.02 0.62 16 45 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 46 H 0.18 2.42 8.06 -2.92 -0.02 2.40 16 47 H 0.14 3.11 7.61 -2.91 -0.02 3.09 16 Total: -1.00 -75.69 380.50 2.70 -73.00 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.40 Total: 15.23 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 6.11 Total: 7.32 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -5.78 Total: -120.17 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.06 Total: -22.19 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -75.69 2.70 -73.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943990016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.025 kcal (2) G-P(sol) polarization free energy of solvation -75.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds