Wall clock time and date at job start Tue Mar 31 2020 22:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.49716 * 2 1 4 4 C 1.53192 * 109.50204 * 120.06508 * 2 1 3 5 5 N 1.46932 * 108.77401 * 174.55865 * 4 2 1 6 6 C 1.36932 * 120.60642 * 126.42355 * 5 4 2 7 7 H 1.08000 * 119.99937 * 207.70164 * 6 5 4 8 8 C 1.38814 * 120.00239 * 27.70397 * 6 5 4 9 9 N 1.31623 * 119.99848 * 17.35183 * 8 6 5 10 10 Si 1.86797 * 120.00131 * 197.35529 * 8 6 5 11 11 H 1.48500 * 109.47438 * 89.99646 * 10 8 6 12 12 H 1.48501 * 109.47234 * 209.99938 * 10 8 6 13 13 H 1.48500 * 109.46843 * 329.99668 * 10 8 6 14 14 C 1.46923 * 118.76054 * 306.43760 * 5 4 2 15 15 C 1.53198 * 108.77480 * 53.59403 * 14 5 4 16 16 C 1.53038 * 109.49887 * 239.93680 * 2 1 3 17 17 H 1.09005 * 109.45829 * 58.65999 * 16 2 1 18 18 N 1.46500 * 109.46079 * 298.70100 * 16 2 1 19 19 C 1.34771 * 120.00148 * 154.99896 * 18 16 2 20 20 O 1.21564 * 120.00149 * 0.02562 * 19 18 16 21 21 C 1.47775 * 120.00092 * 180.02562 * 19 18 16 22 22 C 1.40643 * 119.69876 * 0.02562 * 21 19 18 23 23 C 1.35852 * 120.87786 * 179.97438 * 22 21 19 24 24 C 1.40389 * 119.84498 * 359.97438 * 23 22 21 25 25 C 1.40637 * 121.97695 * 179.97438 * 24 23 22 26 26 C 1.36226 * 118.73201 * 180.02562 * 25 24 23 27 27 N 1.32599 * 121.89691 * 0.02562 * 26 25 24 28 28 C 1.31236 * 122.74226 * 359.97438 * 27 26 25 29 29 C 1.40551 * 119.88942 * 0.02562 * 28 27 26 30 30 C 1.38569 * 119.70139 * 179.72615 * 21 19 18 31 31 H 1.09003 * 109.46617 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47345 * 59.99909 * 1 2 3 33 33 H 1.08999 * 109.47421 * 299.99753 * 1 2 3 34 34 H 1.09012 * 109.58364 * 294.37580 * 4 2 1 35 35 H 1.08997 * 109.58572 * 54.79801 * 4 2 1 36 36 H 0.97000 * 119.99935 * 180.02562 * 9 8 6 37 37 H 1.08992 * 109.59429 * 293.80792 * 14 5 4 38 38 H 1.09007 * 109.58405 * 173.37488 * 14 5 4 39 39 H 1.08998 * 109.49678 * 185.40817 * 15 14 5 40 40 H 1.08998 * 109.52435 * 65.32732 * 15 14 5 41 41 H 0.97002 * 119.99835 * 334.99923 * 18 16 2 42 42 H 1.07999 * 119.56246 * 359.95611 * 22 21 19 43 43 H 1.08004 * 120.07735 * 180.02562 * 23 22 21 44 44 H 1.07995 * 120.63606 * 0.04978 * 25 24 23 45 45 H 1.07990 * 119.05243 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.05435 * 179.97438 * 28 27 26 47 47 H 1.08004 * 120.34296 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0414 -0.7234 1.2497 5 7 3.5047 -0.8293 1.1693 6 6 4.2936 -0.3793 2.1941 7 1 5.2988 -0.0397 1.9926 8 6 3.8014 -0.3597 3.4919 9 7 2.7379 -1.0700 3.8032 10 14 4.6483 0.6748 4.7965 11 1 4.0517 2.0345 4.8144 12 1 4.4694 0.0382 6.1262 13 1 6.0971 0.7739 4.4860 14 6 4.1053 -1.4266 -0.0312 15 6 3.5708 -0.6945 -1.2662 16 6 2.0408 -0.7227 -1.2485 17 1 1.6581 -0.2238 -2.1390 18 7 1.5784 -2.1127 -1.2314 19 6 1.4503 -2.7946 -2.3868 20 8 1.7188 -2.2564 -3.4432 21 6 0.9833 -4.1965 -2.3696 22 6 0.6738 -4.8128 -1.1439 23 6 0.2421 -6.1002 -1.1002 24 6 0.1004 -6.8303 -2.2909 25 6 -0.3423 -8.1652 -2.2978 26 6 -0.4554 -8.8114 -3.4916 27 7 -0.1601 -8.2182 -4.6402 28 6 0.2583 -6.9763 -4.7107 29 6 0.4094 -6.2204 -3.5355 30 6 0.8484 -4.8899 -3.5617 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 0.5138 0.8900 34 1 1.7638 -0.1572 2.1390 35 1 1.6053 -1.7212 1.2985 36 1 2.3937 -1.0560 4.7100 37 1 3.8376 -2.4816 -0.0875 38 1 5.1897 -1.3244 0.0133 39 1 3.9334 -1.1889 -2.1674 40 1 3.9158 0.3393 -1.2546 41 1 1.3644 -2.5423 -0.3884 42 1 0.7811 -4.2554 -0.2251 43 1 0.0076 -6.5606 -0.1517 44 1 -0.5883 -8.6682 -1.3743 45 1 -0.7944 -9.8367 -3.5029 46 1 0.4869 -6.5362 -5.6701 47 1 1.0822 -4.4109 -4.5010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943990019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:25 Heat of formation + Delta-G solvation = 19.613995 kcal Electronic energy + Delta-G solvation = -29278.675743 eV Core-core repulsion = 25425.758498 eV Total energy + Delta-G solvation = -3852.917245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.98664 -41.12349 -39.30420 -37.92117 -35.96614 -34.01098 -33.90564 -33.53314 -32.34983 -31.18710 -30.63157 -27.53273 -27.19159 -25.70557 -24.95949 -23.89139 -23.24189 -22.66206 -22.09056 -20.15977 -19.51142 -18.79822 -18.63064 -17.69687 -16.97865 -16.79719 -16.56708 -16.23526 -16.00432 -15.69401 -15.44639 -15.22305 -15.13485 -14.87450 -14.73803 -14.61334 -14.52927 -14.29464 -14.15897 -13.60210 -13.12301 -13.01549 -12.94145 -12.91098 -12.75553 -12.55429 -12.47650 -12.30323 -12.17156 -11.79763 -11.70603 -11.47792 -11.24194 -11.14839 -11.05304 -10.53787 -10.51215 -10.25214 -9.98090 -9.11656 -8.65957 -7.86798 -5.30400 -0.81161 -0.34730 0.77514 1.47487 1.49937 1.50712 1.57183 2.15300 2.34334 2.51886 3.05338 3.27760 3.45263 3.49653 3.61262 3.65049 3.68195 3.82426 3.88283 3.98770 4.04534 4.06364 4.18277 4.29768 4.34510 4.58118 4.63357 4.66017 4.68432 4.73703 4.78019 4.82003 4.90882 4.94007 4.96343 5.03119 5.09350 5.14519 5.18896 5.29990 5.31346 5.34973 5.51013 5.56783 5.61626 5.66543 5.70286 5.76738 6.40492 6.52258 6.94601 7.15721 7.16922 7.86466 8.37755 9.18738 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017215 B = 0.002740 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.111210 B =10215.880439 C =10972.686741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 H 0.072 0.928 4 C 0.188 3.812 5 N -0.607 5.607 6 C -0.263 4.263 7 H 0.061 0.939 8 C -0.043 4.043 9 N -0.926 5.926 10 Si 0.961 3.039 11 H -0.286 1.286 12 H -0.295 1.295 13 H -0.274 1.274 14 C 0.150 3.850 15 C -0.135 4.135 16 C 0.167 3.833 17 H 0.080 0.920 18 N -0.701 5.701 19 C 0.557 3.443 20 O -0.574 6.574 21 C -0.147 4.147 22 C -0.079 4.079 23 C -0.110 4.110 24 C -0.022 4.022 25 C -0.156 4.156 26 C 0.074 3.926 27 N -0.513 5.513 28 C 0.153 3.847 29 C -0.135 4.135 30 C -0.017 4.017 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.008 0.992 36 H 0.250 0.750 37 H 0.015 0.985 38 H 0.047 0.953 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.405 0.595 42 H 0.135 0.865 43 H 0.163 0.837 44 H 0.169 0.831 45 H 0.180 0.820 46 H 0.187 0.813 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.894 -11.194 -12.136 18.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.137 4.137 3 H 0.091 0.909 4 C 0.062 3.938 5 N -0.330 5.330 6 C -0.393 4.393 7 H 0.079 0.921 8 C -0.239 4.239 9 N -0.572 5.572 10 Si 0.790 3.210 11 H -0.213 1.213 12 H -0.222 1.222 13 H -0.199 1.199 14 C 0.024 3.976 15 C -0.175 4.175 16 C 0.062 3.938 17 H 0.098 0.902 18 N -0.352 5.352 19 C 0.345 3.655 20 O -0.456 6.456 21 C -0.150 4.150 22 C -0.098 4.098 23 C -0.128 4.128 24 C -0.027 4.027 25 C -0.175 4.175 26 C -0.068 4.068 27 N -0.221 5.221 28 C -0.018 4.018 29 C -0.138 4.138 30 C -0.038 4.038 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.026 0.974 36 H 0.060 0.940 37 H 0.033 0.967 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.243 0.757 42 H 0.152 0.848 43 H 0.180 0.820 44 H 0.186 0.814 45 H 0.197 0.803 46 H 0.204 0.796 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.889 -11.427 -13.369 19.706 hybrid contribution 0.643 0.964 2.219 2.503 sum -8.246 -10.463 -11.150 17.372 Atomic orbital electron populations 1.21665 0.93610 1.01923 1.01848 1.21950 0.96539 0.99840 0.95361 0.90931 1.20620 0.82333 0.96004 0.94826 1.44277 1.02309 1.69948 1.16466 1.19438 0.97989 1.35106 0.86760 0.92147 1.25642 0.99468 1.00178 0.98594 1.70131 1.26843 1.41353 1.18898 0.85372 0.78520 0.78589 0.78568 1.21299 1.22165 1.19897 1.20893 0.96238 0.94114 0.86363 1.22255 0.95781 1.01422 0.98061 1.20792 0.93556 0.81166 0.98280 0.90181 1.46044 1.66256 1.13950 1.08947 1.18471 0.77090 0.86312 0.83615 1.90720 1.52695 1.70718 1.31461 1.19932 1.06044 0.93850 0.95194 1.21181 0.95961 0.95874 0.96819 1.21151 0.99594 0.93706 0.98356 1.18618 0.95827 0.95075 0.93189 1.22255 1.00509 0.93321 1.01428 1.22752 0.95598 1.01254 0.87215 1.67537 1.12105 1.11662 1.30768 1.23656 0.91193 0.89035 0.97898 1.19130 1.03929 0.95294 0.95411 1.21502 0.91914 0.91954 0.98392 0.92634 0.91787 0.92585 0.92372 0.97402 0.94050 0.96736 0.93478 0.91978 0.91264 0.75737 0.84769 0.81993 0.81377 0.80301 0.79585 0.83079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 9.05 71.98 0.65 -3.11 16 2 C -0.12 -3.98 2.67 -10.72 -0.03 -4.01 16 3 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 4 C 0.19 8.12 4.30 86.36 0.37 8.49 16 5 N -0.61 -28.71 3.00 -699.07 -2.09 -30.80 16 6 C -0.26 -13.93 9.58 84.03 0.81 -13.13 16 7 H 0.06 3.20 7.89 -2.91 -0.02 3.17 16 8 C -0.04 -2.29 4.91 84.86 0.42 -1.87 16 9 N -0.93 -51.45 11.19 21.65 0.24 -51.20 16 10 Si 0.96 43.54 29.59 68.60 2.03 45.57 16 11 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 13 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 14 C 0.15 6.09 6.26 86.37 0.54 6.63 16 15 C -0.14 -4.71 5.77 30.67 0.18 -4.53 16 16 C 0.17 5.41 2.21 45.02 0.10 5.51 16 17 H 0.08 2.59 7.58 -2.38 -0.02 2.57 16 18 N -0.70 -21.22 3.55 -445.35 -1.58 -22.80 16 19 C 0.56 16.95 7.73 86.77 0.67 17.62 16 20 O -0.57 -20.42 15.96 -3.92 -0.06 -20.48 16 21 C -0.15 -3.74 5.87 -20.09 -0.12 -3.86 16 22 C -0.08 -1.75 9.44 22.30 0.21 -1.53 16 23 C -0.11 -2.05 9.77 22.24 0.22 -1.83 16 24 C -0.02 -0.42 5.75 -21.24 -0.12 -0.54 16 25 C -0.16 -2.31 9.87 22.39 0.22 -2.09 16 26 C 0.07 1.16 11.07 84.11 0.93 2.09 16 27 N -0.51 -10.03 10.30 -195.41 -2.01 -12.04 16 28 C 0.15 2.81 11.05 85.35 0.94 3.75 16 29 C -0.14 -2.79 5.74 -21.32 -0.12 -2.92 16 30 C -0.02 -0.38 9.37 22.81 0.21 -0.16 16 31 H 0.05 1.50 7.53 -2.39 -0.02 1.48 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 2.93 6.04 -2.38 -0.01 2.91 16 35 H 0.01 0.35 6.64 -2.39 -0.02 0.34 16 36 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 37 H 0.01 0.60 7.74 -2.39 -0.02 0.58 16 38 H 0.05 1.94 7.93 -2.38 -0.02 1.92 16 39 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.40 12.05 4.71 -92.71 -0.44 11.61 16 42 H 0.13 2.89 6.34 -2.91 -0.02 2.87 16 43 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 44 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 45 H 0.18 1.69 8.06 -2.92 -0.02 1.67 16 46 H 0.19 2.37 8.06 -2.91 -0.02 2.35 16 47 H 0.15 3.20 7.61 -2.91 -0.02 3.18 16 Total: -1.00 -65.45 376.56 3.16 -62.30 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.56 Total: 24.95 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 6.08 Total: 4.51 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -5.44 Total: -116.84 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.06 Total: -20.48 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -65.45 3.16 -62.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943990019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.911 kcal (2) G-P(sol) polarization free energy of solvation -65.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds