Wall clock time and date at job start Tue Mar 31 2020 22:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.49811 * 2 1 4 4 C 1.53200 * 109.49288 * 120.09030 * 2 1 3 5 5 N 1.46927 * 108.77350 * 174.58549 * 4 2 1 6 6 C 1.36937 * 120.62794 * 126.36736 * 5 4 2 7 7 H 1.08002 * 120.00187 * 332.63391 * 6 5 4 8 8 C 1.38813 * 119.99652 * 152.63112 * 6 5 4 9 9 N 1.31625 * 119.99848 * 159.37476 * 8 6 5 10 10 Si 1.86796 * 120.00153 * 339.37304 * 8 6 5 11 11 H 1.48498 * 109.47367 * 92.92756 * 10 8 6 12 12 H 1.48507 * 109.47132 * 212.93036 * 10 8 6 13 13 H 1.48505 * 109.47232 * 332.92873 * 10 8 6 14 14 C 1.46925 * 118.74098 * 306.39570 * 5 4 2 15 15 C 1.53162 * 108.76934 * 53.60587 * 14 5 4 16 16 C 1.53034 * 109.49901 * 239.92766 * 2 1 3 17 17 H 1.08998 * 109.46533 * 58.68032 * 16 2 1 18 18 N 1.46507 * 109.46359 * 298.70428 * 16 2 1 19 19 C 1.34774 * 120.00140 * 154.97153 * 18 16 2 20 20 O 1.21503 * 119.99809 * 0.02562 * 19 18 16 21 21 C 1.48271 * 119.99963 * 180.02562 * 19 18 16 22 22 C 1.40286 * 119.23986 * 180.02562 * 21 19 18 23 23 C 1.36508 * 119.81383 * 179.97438 * 22 21 19 24 24 C 1.40750 * 118.24805 * 0.03659 * 23 22 21 25 25 C 1.40417 * 121.28718 * 179.97438 * 24 23 22 26 26 C 1.36141 * 119.65246 * 180.02562 * 25 24 23 27 27 C 1.39434 * 120.91335 * 0.25290 * 26 25 24 28 28 C 1.35993 * 121.08040 * 359.45565 * 27 26 25 29 29 C 1.40819 * 119.73904 * 0.56519 * 28 27 26 30 30 N 1.31882 * 119.24258 * 0.02562 * 21 19 18 31 31 H 1.08997 * 109.47188 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47358 * 300.07333 * 1 2 3 33 33 H 1.09002 * 109.46722 * 60.07316 * 1 2 3 34 34 H 1.08998 * 109.58809 * 294.37648 * 4 2 1 35 35 H 1.09000 * 109.58314 * 54.80348 * 4 2 1 36 36 H 0.96993 * 119.99552 * 179.97438 * 9 8 6 37 37 H 1.08994 * 109.58462 * 173.39758 * 14 5 4 38 38 H 1.09000 * 109.58376 * 293.82038 * 14 5 4 39 39 H 1.09000 * 109.47737 * 185.40582 * 15 14 5 40 40 H 1.08999 * 109.50119 * 65.31830 * 15 14 5 41 41 H 0.97000 * 119.99897 * 334.97799 * 18 16 2 42 42 H 1.07995 * 120.09193 * 359.97346 * 22 21 19 43 43 H 1.08007 * 120.87371 * 180.02562 * 23 22 21 44 44 H 1.07996 * 120.17518 * 0.05017 * 25 24 23 45 45 H 1.07993 * 119.54121 * 179.97438 * 26 25 24 46 46 H 1.07997 * 119.45761 * 179.74761 * 27 26 25 47 47 H 1.08008 * 120.13061 * 180.23832 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7241 1.2496 5 7 3.5046 -0.8294 1.1696 6 6 4.2935 -0.3789 2.1942 7 1 3.9444 0.4177 2.8344 8 6 5.5419 -0.9463 2.4099 9 7 6.4551 -0.2878 3.0919 10 14 5.9258 -2.6443 1.7326 11 1 6.5607 -2.5124 0.3967 12 1 6.8541 -3.3468 2.6547 13 1 4.6679 -3.4236 1.6079 14 6 4.1053 -1.4267 -0.0308 15 6 3.5710 -0.6948 -1.2656 16 6 2.0409 -0.7229 -1.2484 17 1 1.6585 -0.2240 -2.1389 18 7 1.5784 -2.1129 -1.2311 19 6 1.4498 -2.7947 -2.3866 20 8 1.7178 -2.2567 -3.4425 21 6 0.9812 -4.2014 -2.3691 22 6 0.8537 -4.8962 -3.5811 23 6 0.4238 -6.1918 -3.5786 24 6 0.1195 -6.7904 -2.3416 25 6 -0.3283 -8.1190 -2.2649 26 6 -0.6136 -8.6646 -1.0507 27 6 -0.4725 -7.9204 0.1200 28 6 -0.0359 -6.6329 0.0852 29 6 0.2691 -6.0320 -1.1513 30 7 0.6940 -4.7705 -1.2146 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5149 0.8893 33 1 -0.3633 0.5127 -0.8907 34 1 1.7637 -0.1584 2.1389 35 1 1.6052 -1.7219 1.2977 36 1 7.3272 -0.6845 3.2429 37 1 5.1896 -1.3247 0.0138 38 1 3.8375 -2.4818 -0.0870 39 1 3.9338 -1.1894 -2.1666 40 1 3.9160 0.3390 -1.2535 41 1 1.3647 -2.5425 -0.3881 42 1 1.0949 -4.4075 -4.5134 43 1 0.3198 -6.7430 -4.5016 44 1 -0.4453 -8.7052 -3.1643 45 1 -0.9582 -9.6865 -0.9938 46 1 -0.7094 -8.3754 1.0704 47 1 0.0714 -6.0718 1.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944307603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:44 Heat of formation + Delta-G solvation = 44.943832 kcal Electronic energy + Delta-G solvation = -29675.582790 eV Core-core repulsion = 25823.763929 eV Total energy + Delta-G solvation = -3851.818861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.23953 -39.89454 -38.06310 -36.96159 -34.49149 -33.85811 -32.57453 -31.57551 -31.07687 -30.44943 -29.93978 -26.41710 -25.73507 -24.84751 -23.91358 -22.40320 -22.15058 -21.50543 -21.04161 -18.87798 -18.48833 -18.05027 -17.44146 -16.72652 -15.78262 -15.54131 -15.29167 -15.11607 -14.80248 -14.67350 -14.49685 -14.15670 -14.10493 -13.56142 -13.53705 -13.39803 -13.39418 -13.35749 -12.49533 -12.25058 -11.98240 -11.97772 -11.81962 -11.72572 -11.57689 -11.49108 -11.25405 -10.89582 -10.64041 -10.50876 -10.30240 -10.19004 -9.95084 -9.70130 -9.61383 -9.47097 -9.10549 -8.79904 -8.60424 -8.53577 -6.95775 -5.94089 -3.29700 -0.06299 0.40235 1.65525 2.25750 3.13273 3.19531 3.34769 3.49998 3.53653 3.86584 3.89953 4.23731 4.45272 4.49782 4.54676 4.63806 4.82452 4.85190 4.94660 5.02178 5.06596 5.15907 5.25943 5.36522 5.45225 5.45974 5.61322 5.68003 5.72042 5.75485 5.88623 5.90981 6.00728 6.01244 6.06851 6.08661 6.17072 6.19089 6.30709 6.38562 6.42930 6.49002 6.61756 6.66963 6.72024 6.77119 6.95395 7.39855 7.75376 7.96844 8.29257 8.33552 8.94737 9.73309 10.10802 11.21862 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011606 B = 0.003707 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.068189 B = 7550.625450 C = 8558.608616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 H 0.088 0.912 4 C 0.154 3.846 5 N -0.605 5.605 6 C -0.259 4.259 7 H 0.086 0.914 8 C 0.025 3.975 9 N -0.908 5.908 10 Si 0.881 3.119 11 H -0.290 1.290 12 H -0.304 1.304 13 H -0.271 1.271 14 C 0.128 3.872 15 C -0.147 4.147 16 C 0.157 3.843 17 H 0.082 0.918 18 N -0.691 5.691 19 C 0.565 3.435 20 O -0.537 6.537 21 C 0.121 3.879 22 C -0.124 4.124 23 C -0.065 4.065 24 C -0.089 4.089 25 C -0.103 4.103 26 C -0.108 4.108 27 C -0.106 4.106 28 C -0.082 4.082 29 C 0.124 3.876 30 N -0.440 5.440 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.020 0.980 36 H 0.262 0.738 37 H 0.072 0.928 38 H 0.024 0.976 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.412 0.588 42 H 0.151 0.849 43 H 0.145 0.855 44 H 0.131 0.869 45 H 0.128 0.872 46 H 0.132 0.868 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.104 -14.361 -11.467 25.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 H 0.106 0.894 4 C 0.027 3.973 5 N -0.328 5.328 6 C -0.387 4.387 7 H 0.104 0.896 8 C -0.174 4.174 9 N -0.551 5.551 10 Si 0.712 3.288 11 H -0.218 1.218 12 H -0.232 1.232 13 H -0.196 1.196 14 C 0.003 3.997 15 C -0.187 4.187 16 C 0.053 3.947 17 H 0.100 0.900 18 N -0.342 5.342 19 C 0.349 3.651 20 O -0.414 6.414 21 C -0.033 4.033 22 C -0.145 4.145 23 C -0.091 4.091 24 C -0.091 4.091 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.126 4.126 28 C -0.100 4.100 29 C 0.001 3.999 30 N -0.152 5.152 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.038 0.962 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.042 0.958 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.250 0.750 42 H 0.169 0.831 43 H 0.163 0.837 44 H 0.149 0.851 45 H 0.146 0.854 46 H 0.150 0.850 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.659 -13.503 -11.250 24.216 hybrid contribution 0.282 -1.748 -0.710 1.907 sum -16.376 -15.250 -11.960 25.373 Atomic orbital electron populations 1.21769 0.95384 1.01539 1.01367 1.21944 0.94936 1.00972 0.96113 0.89378 1.20953 0.84508 0.96656 0.95163 1.44355 1.00620 1.71931 1.15906 1.18912 0.97824 1.13911 1.08071 0.89621 1.25249 0.96427 0.97956 0.97740 1.69837 1.04430 1.37019 1.43828 0.86985 0.77710 0.87167 0.76975 1.21769 1.23230 1.19565 1.21280 0.97985 0.94611 0.85864 1.22398 0.94539 1.02434 0.99292 1.21009 0.94630 0.80355 0.98724 0.90043 1.46055 1.64949 1.14052 1.09146 1.17876 0.78255 0.84426 0.84545 1.90759 1.51105 1.68795 1.30718 1.21478 0.97232 0.95158 0.89409 1.21763 0.98488 0.94761 0.99465 1.21453 0.95726 0.94568 0.97308 1.18985 1.00494 0.95571 0.94059 1.20988 0.99101 0.93454 0.98621 1.21008 0.98984 1.00230 0.92390 1.20949 0.98702 0.94046 0.98920 1.20962 0.97499 0.95085 0.96494 1.18868 0.98170 0.89560 0.93331 1.67866 1.08955 1.10595 1.27745 0.92954 0.92451 0.93113 0.91445 0.96195 0.92797 0.91042 0.95789 0.92186 0.90530 0.75039 0.83129 0.83703 0.85073 0.85367 0.85004 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.05 37.16 0.34 -1.51 16 2 C -0.12 -1.88 2.67 -90.50 -0.24 -2.12 16 3 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 4 C 0.15 2.90 5.50 -3.71 -0.02 2.88 16 5 N -0.60 -14.17 2.77 -172.33 -0.48 -14.64 16 6 C -0.26 -7.19 10.04 -15.06 -0.15 -7.34 16 7 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 8 C 0.03 0.73 5.23 -17.43 -0.09 0.64 16 9 N -0.91 -27.97 13.97 55.49 0.78 -27.20 16 10 Si 0.88 22.93 24.34 -169.99 -4.14 18.79 16 11 H -0.29 -7.41 6.62 56.52 0.37 -7.04 16 12 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 13 H -0.27 -6.95 6.64 56.52 0.38 -6.58 16 14 C 0.13 2.87 3.94 -3.73 -0.01 2.86 16 15 C -0.15 -2.77 5.77 -26.62 -0.15 -2.92 16 16 C 0.16 2.59 2.21 -67.89 -0.15 2.44 16 17 H 0.08 1.32 7.58 -51.93 -0.39 0.93 16 18 N -0.69 -11.17 3.58 -54.57 -0.20 -11.37 16 19 C 0.57 9.22 7.78 -12.14 -0.09 9.13 16 20 O -0.54 -9.70 15.94 5.36 0.09 -9.62 16 21 C 0.12 1.76 6.75 -82.95 -0.56 1.20 16 22 C -0.12 -1.47 9.54 -39.44 -0.38 -1.85 16 23 C -0.06 -0.62 9.88 -39.26 -0.39 -1.01 16 24 C -0.09 -0.94 5.75 -106.72 -0.61 -1.56 16 25 C -0.10 -0.82 9.77 -39.52 -0.39 -1.20 16 26 C -0.11 -0.78 9.96 -39.89 -0.40 -1.18 16 27 C -0.11 -0.86 9.94 -39.94 -0.40 -1.26 16 28 C -0.08 -0.88 9.99 -39.41 -0.39 -1.27 16 29 C 0.12 1.58 6.61 -84.86 -0.56 1.02 16 30 N -0.44 -6.39 9.47 -7.54 -0.07 -6.46 16 31 H 0.05 0.67 7.53 -51.93 -0.39 0.28 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 35 H 0.02 0.37 6.64 -51.93 -0.34 0.03 16 36 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 37 H 0.07 1.78 4.49 -51.93 -0.23 1.54 16 38 H 0.02 0.55 6.67 -51.93 -0.35 0.21 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.41 6.68 6.03 -40.82 -0.25 6.43 16 42 H 0.15 1.63 7.60 -52.49 -0.40 1.23 16 43 H 0.15 0.87 8.06 -52.48 -0.42 0.45 16 44 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 45 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 46 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 47 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 372.66 15.07 5.62 5.62 Total: -1.00 -33.19 372.66 -9.66 -42.86 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.61 Total: 5.08 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -4.65 Total: -3.05 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 0.03 Total: -59.67 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.14 Total: 18.79 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.19 -9.66 -42.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944307603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.802 kcal (2) G-P(sol) polarization free energy of solvation -33.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds