Wall clock time and date at job start Tue Mar 31 2020 22:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.50029 * 2 1 4 4 C 1.53192 * 109.49685 * 239.93439 * 2 1 3 5 5 N 1.46922 * 108.77746 * 185.38163 * 4 2 1 6 6 C 1.36940 * 120.62906 * 233.58494 * 5 4 2 7 7 H 1.08000 * 120.00137 * 27.68622 * 6 5 4 8 8 C 1.38812 * 119.99979 * 207.68003 * 6 5 4 9 9 N 1.31621 * 119.99877 * 17.37697 * 8 6 5 10 10 Si 1.86800 * 119.99995 * 197.36845 * 8 6 5 11 11 H 1.48497 * 109.47280 * 60.00370 * 10 8 6 12 12 H 1.48508 * 109.47136 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47122 * 300.00385 * 10 8 6 14 14 C 1.46922 * 118.74031 * 53.60916 * 5 4 2 15 15 C 1.53197 * 108.77520 * 306.38959 * 14 5 4 16 16 C 1.53038 * 109.52639 * 120.08067 * 2 1 3 17 17 H 1.08994 * 109.45991 * 301.35204 * 16 2 1 18 18 N 1.46498 * 109.46113 * 61.31048 * 16 2 1 19 19 C 1.34780 * 120.00347 * 204.99973 * 18 16 2 20 20 O 1.21501 * 119.99833 * 359.97438 * 19 18 16 21 21 C 1.48270 * 120.00357 * 179.97438 * 19 18 16 22 22 C 1.40277 * 119.24312 * 179.72943 * 21 19 18 23 23 C 1.36510 * 119.81803 * 179.69627 * 22 21 19 24 24 C 1.40749 * 118.24083 * 0.58250 * 23 22 21 25 25 C 1.40426 * 121.28020 * 179.64104 * 24 23 22 26 26 C 1.36139 * 119.64592 * 179.97438 * 25 24 23 27 27 C 1.39433 * 120.91786 * 0.04957 * 26 25 24 28 28 C 1.35996 * 121.08385 * 359.97438 * 27 26 25 29 29 C 1.40818 * 119.73413 * 359.97438 * 28 27 26 30 30 N 1.31878 * 119.23903 * 0.02562 * 21 19 18 31 31 H 1.09004 * 109.47229 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46841 * 300.00044 * 1 2 3 33 33 H 1.08993 * 109.47278 * 59.99875 * 1 2 3 34 34 H 1.09004 * 109.58631 * 305.16587 * 4 2 1 35 35 H 1.09002 * 109.58623 * 65.44758 * 4 2 1 36 36 H 0.97001 * 119.99724 * 180.02562 * 9 8 6 37 37 H 1.08993 * 109.58801 * 66.17982 * 14 5 4 38 38 H 1.09002 * 109.58458 * 186.60651 * 14 5 4 39 39 H 1.08995 * 109.49971 * 174.58164 * 15 14 5 40 40 H 1.09003 * 109.49921 * 294.65557 * 15 14 5 41 41 H 0.97003 * 120.00029 * 25.00018 * 18 16 2 42 42 H 1.08004 * 120.09177 * 0.02562 * 22 21 19 43 43 H 1.07998 * 120.87801 * 180.27354 * 23 22 21 44 44 H 1.07989 * 120.17708 * 0.03003 * 25 24 23 45 45 H 1.08001 * 119.53636 * 180.02562 * 26 25 24 46 46 H 1.08003 * 119.45697 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.12767 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2498 5 7 3.5046 -0.8282 -1.1702 6 6 4.2930 -0.3779 -2.1954 7 1 3.9456 0.4217 -2.8327 8 6 5.5389 -0.9492 -2.4152 9 7 5.8284 -2.1199 -1.8877 10 14 6.8044 -0.0568 -3.4599 11 1 7.1164 1.2579 -2.8440 12 1 8.0430 -0.8722 -3.5413 13 1 6.2599 0.1530 -4.8255 14 6 4.1059 -1.4256 0.0298 15 6 3.5716 -0.6942 1.2653 16 6 2.0415 -0.7229 1.2481 17 1 1.6589 -0.2246 2.1388 18 7 1.5797 -2.1131 1.2306 19 6 1.4522 -2.7955 2.3859 20 8 1.7208 -2.2579 3.4418 21 6 0.9843 -4.2023 2.3682 22 6 0.8629 -4.8994 3.5795 23 6 0.4272 -6.1931 3.5774 24 6 0.1234 -6.7916 2.3403 25 6 -0.3225 -8.1209 2.2633 26 6 -0.6074 -8.6664 1.0490 27 6 -0.4617 -7.9237 -0.1220 28 6 -0.0319 -6.6339 -0.0865 29 6 0.2721 -6.0328 1.1501 30 7 0.6974 -4.7713 1.2136 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.6057 -1.7215 -1.2981 35 1 1.7610 -0.1590 -2.1391 36 1 6.6991 -2.5189 -2.0411 37 1 3.8387 -2.4808 0.0858 38 1 5.1902 -1.3229 -0.0151 39 1 3.9346 -1.1888 2.1662 40 1 3.9166 0.3397 1.2537 41 1 1.3656 -2.5425 0.3876 42 1 1.1083 -4.4122 4.5116 43 1 0.3232 -6.7444 4.5003 44 1 -0.4397 -8.7071 3.1627 45 1 -0.9506 -9.6889 0.9919 46 1 -0.6940 -8.3801 -1.0729 47 1 0.0750 -6.0727 -1.0030 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944307604.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:48 Heat of formation + Delta-G solvation = 39.484621 kcal Electronic energy + Delta-G solvation = -29509.487456 eV Core-core repulsion = 25657.431866 eV Total energy + Delta-G solvation = -3852.055590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.11279 -39.69680 -37.82846 -36.81498 -34.29500 -33.74065 -32.44892 -31.19022 -30.83589 -30.28682 -29.69643 -25.99383 -25.55478 -24.79470 -23.80566 -22.29311 -22.12997 -21.14028 -20.84705 -18.58261 -18.35021 -17.89368 -17.32994 -16.65300 -15.53468 -15.37883 -15.11853 -14.81030 -14.67744 -14.55270 -14.24468 -14.06327 -13.81520 -13.65062 -13.40331 -13.28739 -13.20850 -12.88574 -12.50508 -12.09236 -11.87321 -11.81412 -11.70921 -11.44127 -11.33427 -11.04518 -10.78677 -10.78171 -10.66335 -10.35008 -10.19613 -10.13084 -10.00686 -9.70179 -9.51867 -9.38419 -8.98690 -8.57624 -8.46814 -8.41738 -6.64627 -5.76104 -3.18811 0.05724 0.51634 1.76985 2.38239 3.27081 3.36132 3.39907 3.45929 3.47067 3.99705 4.03128 4.34598 4.51048 4.56683 4.60345 4.75626 4.93022 4.97295 5.14554 5.21375 5.27133 5.35189 5.40657 5.53734 5.56472 5.64380 5.72770 5.79882 5.85902 5.92695 6.02736 6.12035 6.13217 6.18615 6.20618 6.28437 6.32882 6.40153 6.49568 6.59530 6.66326 6.69929 6.80678 6.95771 7.01109 7.41130 7.54251 7.71137 7.81612 7.93055 8.46601 8.46773 9.23148 9.86770 10.43173 11.31808 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012156 B = 0.003273 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.897757 B = 8551.894983 C = 9568.541024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 H 0.083 0.917 4 C 0.151 3.849 5 N -0.591 5.591 6 C -0.254 4.254 7 H 0.065 0.935 8 C 0.004 3.996 9 N -0.901 5.901 10 Si 0.902 3.098 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.174 3.826 15 C -0.155 4.155 16 C 0.158 3.842 17 H 0.075 0.925 18 N -0.685 5.685 19 C 0.565 3.435 20 O -0.541 6.541 21 C 0.123 3.877 22 C -0.124 4.124 23 C -0.066 4.066 24 C -0.090 4.090 25 C -0.103 4.103 26 C -0.109 4.109 27 C -0.108 4.108 28 C -0.080 4.080 29 C 0.125 3.875 30 N -0.438 5.438 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.016 0.984 35 H 0.056 0.944 36 H 0.254 0.746 37 H 0.019 0.981 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.412 0.588 42 H 0.150 0.850 43 H 0.144 0.856 44 H 0.131 0.869 45 H 0.127 0.873 46 H 0.131 0.869 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.915 -10.637 8.691 20.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.139 4.139 3 H 0.101 0.899 4 C 0.024 3.976 5 N -0.313 5.313 6 C -0.384 4.384 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.545 5.545 10 Si 0.732 3.268 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.209 1.209 14 C 0.048 3.952 15 C -0.195 4.195 16 C 0.054 3.946 17 H 0.093 0.907 18 N -0.336 5.336 19 C 0.349 3.651 20 O -0.418 6.418 21 C -0.031 4.031 22 C -0.145 4.145 23 C -0.092 4.092 24 C -0.092 4.092 25 C -0.122 4.122 26 C -0.127 4.127 27 C -0.128 4.128 28 C -0.099 4.099 29 C 0.001 3.999 30 N -0.149 5.149 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.033 0.967 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.037 0.963 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.250 0.750 42 H 0.168 0.832 43 H 0.162 0.838 44 H 0.148 0.852 45 H 0.145 0.855 46 H 0.149 0.851 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.468 -9.892 8.536 19.494 hybrid contribution 0.615 -0.388 -0.168 0.746 sum -13.853 -10.280 8.367 19.173 Atomic orbital electron populations 1.21773 0.95749 1.01458 1.01060 1.21947 0.94589 1.00706 0.96685 0.89908 1.20911 0.86115 0.96260 0.94294 1.44049 0.99132 1.71535 1.16579 1.19130 0.98272 1.12351 1.08625 0.91721 1.25025 0.99878 0.95337 0.99274 1.70039 1.21880 1.14572 1.47981 0.86387 0.81117 0.79147 0.80199 1.21055 1.21698 1.20930 1.20726 0.99234 0.93011 0.82196 1.22580 0.94037 1.02020 1.00829 1.20990 0.95267 0.80247 0.98132 0.90721 1.46013 1.64552 1.13971 1.09074 1.17857 0.78320 0.84387 0.84584 1.90746 1.51414 1.68862 1.30797 1.21494 0.97036 0.95205 0.89332 1.21763 0.98435 0.94766 0.99505 1.21434 0.95885 0.94610 0.97262 1.18981 1.00584 0.95531 0.94085 1.20973 0.99184 0.93479 0.98566 1.20990 0.99112 1.00186 0.92415 1.20934 0.98916 0.94053 0.98856 1.20965 0.97345 0.95021 0.96531 1.18877 0.98087 0.89620 0.93297 1.67886 1.08776 1.10563 1.27685 0.92975 0.93302 0.92706 0.96675 0.92499 0.93638 0.96324 0.89592 0.92665 0.91633 0.74987 0.83193 0.83795 0.85159 0.85464 0.85077 0.84156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.06 37.16 0.34 -1.65 16 2 C -0.12 -2.01 2.67 -90.50 -0.24 -2.25 16 3 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 4 C 0.15 3.06 5.50 -3.71 -0.02 3.04 16 5 N -0.59 -14.57 2.99 -172.32 -0.52 -15.08 16 6 C -0.25 -6.92 9.59 -15.06 -0.14 -7.06 16 7 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 8 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 9 N -0.90 -26.28 11.19 55.49 0.62 -25.65 16 10 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.17 4.22 5.05 -3.71 -0.02 4.20 16 15 C -0.15 -3.14 5.77 -26.61 -0.15 -3.30 16 16 C 0.16 2.82 2.21 -67.89 -0.15 2.66 16 17 H 0.07 1.32 7.58 -51.93 -0.39 0.92 16 18 N -0.69 -12.00 3.58 -54.58 -0.20 -12.20 16 19 C 0.56 9.92 7.78 -12.13 -0.09 9.82 16 20 O -0.54 -10.44 15.94 5.36 0.09 -10.35 16 21 C 0.12 1.92 6.75 -82.96 -0.56 1.36 16 22 C -0.12 -1.59 9.54 -39.44 -0.38 -1.96 16 23 C -0.07 -0.69 9.88 -39.26 -0.39 -1.08 16 24 C -0.09 -1.03 5.75 -106.72 -0.61 -1.64 16 25 C -0.10 -0.89 9.77 -39.51 -0.39 -1.28 16 26 C -0.11 -0.86 9.96 -39.89 -0.40 -1.26 16 27 C -0.11 -0.96 9.94 -39.94 -0.40 -1.35 16 28 C -0.08 -0.93 9.99 -39.41 -0.39 -1.32 16 29 C 0.12 1.70 6.61 -84.85 -0.56 1.14 16 30 N -0.44 -6.82 9.47 -7.54 -0.07 -6.90 16 31 H 0.05 0.73 7.54 -51.93 -0.39 0.34 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.02 0.31 6.64 -51.93 -0.34 -0.03 16 35 H 0.06 1.14 7.94 -51.93 -0.41 0.72 16 36 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 38 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.41 7.33 6.03 -40.82 -0.25 7.09 16 42 H 0.15 1.76 7.60 -52.48 -0.40 1.37 16 43 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 46 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 47 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 379.09 15.07 5.71 5.71 Total: -1.00 -31.90 379.09 -10.72 -42.62 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.68 Total: 7.06 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -4.64 Total: -1.92 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.16 Total: -59.83 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.90 -10.72 -42.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944307604.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.103 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds