Wall clock time and date at job start Tue Mar 31 2020 22:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.50029 * 2 1 4 4 C 1.53192 * 109.49685 * 239.93439 * 2 1 3 5 5 N 1.46922 * 108.77746 * 185.38163 * 4 2 1 6 6 C 1.36940 * 120.62906 * 233.58494 * 5 4 2 7 7 H 1.08000 * 120.00137 * 27.68622 * 6 5 4 8 8 C 1.38812 * 119.99979 * 207.68003 * 6 5 4 9 9 N 1.31621 * 119.99877 * 17.37697 * 8 6 5 10 10 Si 1.86800 * 119.99995 * 197.36845 * 8 6 5 11 11 H 1.48497 * 109.47280 * 60.00370 * 10 8 6 12 12 H 1.48508 * 109.47136 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47122 * 300.00385 * 10 8 6 14 14 C 1.46922 * 118.74031 * 53.60916 * 5 4 2 15 15 C 1.53197 * 108.77520 * 306.38959 * 14 5 4 16 16 C 1.53038 * 109.52639 * 120.08067 * 2 1 3 17 17 H 1.08994 * 109.45991 * 301.35204 * 16 2 1 18 18 N 1.46498 * 109.46113 * 61.31048 * 16 2 1 19 19 C 1.34780 * 120.00347 * 204.99973 * 18 16 2 20 20 O 1.21501 * 119.99833 * 359.97438 * 19 18 16 21 21 C 1.48270 * 120.00357 * 179.97438 * 19 18 16 22 22 C 1.40277 * 119.24312 * 179.72943 * 21 19 18 23 23 C 1.36510 * 119.81803 * 179.69627 * 22 21 19 24 24 C 1.40749 * 118.24083 * 0.58250 * 23 22 21 25 25 C 1.40426 * 121.28020 * 179.64104 * 24 23 22 26 26 C 1.36139 * 119.64592 * 179.97438 * 25 24 23 27 27 C 1.39433 * 120.91786 * 0.04957 * 26 25 24 28 28 C 1.35996 * 121.08385 * 359.97438 * 27 26 25 29 29 C 1.40818 * 119.73413 * 359.97438 * 28 27 26 30 30 N 1.31878 * 119.23903 * 0.02562 * 21 19 18 31 31 H 1.09004 * 109.47229 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46841 * 300.00044 * 1 2 3 33 33 H 1.08993 * 109.47278 * 59.99875 * 1 2 3 34 34 H 1.09004 * 109.58631 * 305.16587 * 4 2 1 35 35 H 1.09002 * 109.58623 * 65.44758 * 4 2 1 36 36 H 0.97001 * 119.99724 * 180.02562 * 9 8 6 37 37 H 1.08993 * 109.58801 * 66.17982 * 14 5 4 38 38 H 1.09002 * 109.58458 * 186.60651 * 14 5 4 39 39 H 1.08995 * 109.49971 * 174.58164 * 15 14 5 40 40 H 1.09003 * 109.49921 * 294.65557 * 15 14 5 41 41 H 0.97003 * 120.00029 * 25.00018 * 18 16 2 42 42 H 1.08004 * 120.09177 * 0.02562 * 22 21 19 43 43 H 1.07998 * 120.87801 * 180.27354 * 23 22 21 44 44 H 1.07989 * 120.17708 * 0.03003 * 25 24 23 45 45 H 1.08001 * 119.53636 * 180.02562 * 26 25 24 46 46 H 1.08003 * 119.45697 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.12767 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2498 5 7 3.5046 -0.8282 -1.1702 6 6 4.2930 -0.3779 -2.1954 7 1 3.9456 0.4217 -2.8327 8 6 5.5389 -0.9492 -2.4152 9 7 5.8284 -2.1199 -1.8877 10 14 6.8044 -0.0568 -3.4599 11 1 7.1164 1.2579 -2.8440 12 1 8.0430 -0.8722 -3.5413 13 1 6.2599 0.1530 -4.8255 14 6 4.1059 -1.4256 0.0298 15 6 3.5716 -0.6942 1.2653 16 6 2.0415 -0.7229 1.2481 17 1 1.6589 -0.2246 2.1388 18 7 1.5797 -2.1131 1.2306 19 6 1.4522 -2.7955 2.3859 20 8 1.7208 -2.2579 3.4418 21 6 0.9843 -4.2023 2.3682 22 6 0.8629 -4.8994 3.5795 23 6 0.4272 -6.1931 3.5774 24 6 0.1234 -6.7916 2.3403 25 6 -0.3225 -8.1209 2.2633 26 6 -0.6074 -8.6664 1.0490 27 6 -0.4617 -7.9237 -0.1220 28 6 -0.0319 -6.6339 -0.0865 29 6 0.2721 -6.0328 1.1501 30 7 0.6974 -4.7713 1.2136 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.6057 -1.7215 -1.2981 35 1 1.7610 -0.1590 -2.1391 36 1 6.6991 -2.5189 -2.0411 37 1 3.8387 -2.4808 0.0858 38 1 5.1902 -1.3229 -0.0151 39 1 3.9346 -1.1888 2.1662 40 1 3.9166 0.3397 1.2537 41 1 1.3656 -2.5425 0.3876 42 1 1.1083 -4.4122 4.5116 43 1 0.3232 -6.7444 4.5003 44 1 -0.4397 -8.7071 3.1627 45 1 -0.9506 -9.6889 0.9919 46 1 -0.6940 -8.3801 -1.0729 47 1 0.0750 -6.0727 -1.0030 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944307604.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:46 Heat of formation + Delta-G solvation = 21.052525 kcal Electronic energy + Delta-G solvation = -29510.286732 eV Core-core repulsion = 25657.431866 eV Total energy + Delta-G solvation = -3852.854865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.09000 -41.03374 -39.26301 -37.80543 -36.04800 -34.71194 -33.91156 -32.91586 -32.14150 -31.39043 -30.87626 -27.43420 -27.29024 -26.07422 -24.71501 -23.79922 -23.08996 -22.82540 -22.15700 -20.12542 -19.46956 -18.91000 -18.64754 -18.12645 -16.93721 -16.69858 -16.53508 -16.31464 -15.71081 -15.61915 -15.59431 -15.40624 -15.18189 -15.01670 -14.72853 -14.53405 -14.39278 -14.12520 -14.03783 -13.55658 -13.18137 -12.97531 -12.72290 -12.69854 -12.63023 -12.54011 -12.45689 -12.38289 -12.24022 -11.97300 -11.70783 -11.64594 -11.51149 -11.38736 -11.14215 -10.59290 -10.53435 -10.09756 -9.80175 -9.27960 -8.68643 -7.87135 -5.32863 -0.84170 -0.34558 0.92419 1.38892 1.46117 1.49126 1.55542 2.05611 2.23960 2.50951 2.96481 3.08969 3.27543 3.55995 3.62776 3.68289 3.77170 3.83677 3.90918 4.04141 4.09699 4.16110 4.24379 4.36802 4.38844 4.50434 4.57517 4.64297 4.74842 4.76425 4.78008 4.89326 4.95357 4.99123 5.03639 5.06935 5.08543 5.14668 5.26991 5.37282 5.40020 5.44198 5.46660 5.49303 5.53459 5.63374 5.71080 5.86647 6.36967 6.38016 6.69556 7.08916 7.13231 7.84596 8.37053 9.18771 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012156 B = 0.003273 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.897757 B = 8551.894983 C = 9568.541024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 H 0.085 0.915 4 C 0.150 3.850 5 N -0.606 5.606 6 C -0.263 4.263 7 H 0.071 0.929 8 C -0.051 4.051 9 N -0.935 5.935 10 Si 0.967 3.033 11 H -0.279 1.279 12 H -0.297 1.297 13 H -0.273 1.273 14 C 0.190 3.810 15 C -0.143 4.143 16 C 0.162 3.838 17 H 0.085 0.915 18 N -0.686 5.686 19 C 0.563 3.437 20 O -0.564 6.564 21 C 0.095 3.905 22 C -0.142 4.142 23 C -0.046 4.046 24 C -0.102 4.102 25 C -0.098 4.098 26 C -0.104 4.104 27 C -0.092 4.092 28 C -0.115 4.115 29 C 0.096 3.904 30 N -0.466 5.466 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.012 0.988 35 H 0.061 0.939 36 H 0.248 0.752 37 H -0.009 1.009 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.409 0.591 42 H 0.155 0.845 43 H 0.189 0.811 44 H 0.168 0.832 45 H 0.167 0.833 46 H 0.158 0.842 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.047 -12.215 9.272 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 H 0.104 0.896 4 C 0.024 3.976 5 N -0.329 5.329 6 C -0.393 4.393 7 H 0.089 0.911 8 C -0.246 4.246 9 N -0.581 5.581 10 Si 0.795 3.205 11 H -0.205 1.205 12 H -0.223 1.223 13 H -0.199 1.199 14 C 0.064 3.936 15 C -0.183 4.183 16 C 0.058 3.942 17 H 0.103 0.897 18 N -0.336 5.336 19 C 0.348 3.652 20 O -0.443 6.443 21 C -0.057 4.057 22 C -0.163 4.163 23 C -0.071 4.071 24 C -0.104 4.104 25 C -0.117 4.117 26 C -0.122 4.122 27 C -0.112 4.112 28 C -0.133 4.133 29 C -0.028 4.028 30 N -0.178 5.178 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.030 0.970 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.009 0.991 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.247 0.753 42 H 0.172 0.828 43 H 0.206 0.794 44 H 0.186 0.814 45 H 0.184 0.816 46 H 0.176 0.824 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.637 -11.450 9.112 22.157 hybrid contribution 1.185 -0.096 -0.405 1.256 sum -15.452 -11.545 8.707 21.163 Atomic orbital electron populations 1.21693 0.92905 1.01824 1.02672 1.21802 0.96787 0.99905 0.94104 0.89625 1.21057 0.83609 0.96612 0.96303 1.44263 1.00948 1.71462 1.16219 1.19513 0.98830 1.12170 1.08775 0.91133 1.25803 1.01789 0.95993 1.01024 1.70212 1.21859 1.16172 1.49887 0.85345 0.78313 0.77826 0.78983 1.20464 1.22329 1.19877 1.20373 0.97134 0.92087 0.84046 1.22404 0.96161 1.01362 0.98370 1.20919 0.93222 0.80940 0.99101 0.89718 1.45990 1.64643 1.13834 1.09153 1.18258 0.77547 0.85355 0.84028 1.90705 1.52552 1.69738 1.31347 1.21306 0.99299 0.94415 0.90708 1.21848 0.99930 0.96002 0.98515 1.21899 0.93122 0.93515 0.98611 1.19326 1.00674 0.96854 0.93564 1.21421 0.97567 0.92164 1.00514 1.21482 0.97497 1.01668 0.91509 1.21345 0.96261 0.92742 1.00858 1.21065 0.99943 0.96585 0.95728 1.19300 0.98971 0.89395 0.95130 1.67760 1.09859 1.12146 1.28083 0.93260 0.91710 0.91054 0.96996 0.92034 0.94316 0.99068 0.93254 0.93244 0.91234 0.75307 0.82763 0.79429 0.81420 0.81594 0.82413 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 9.06 71.98 0.65 -2.86 16 2 C -0.11 -3.53 2.67 -10.72 -0.03 -3.56 16 3 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 4 C 0.15 6.14 5.50 86.36 0.47 6.61 16 5 N -0.61 -30.81 2.99 -699.10 -2.09 -32.91 16 6 C -0.26 -14.58 9.59 84.03 0.81 -13.77 16 7 H 0.07 3.76 7.89 -2.91 -0.02 3.74 16 8 C -0.05 -2.89 4.91 84.86 0.42 -2.47 16 9 N -0.94 -56.93 11.19 21.65 0.24 -56.69 16 10 Si 0.97 45.61 29.59 68.60 2.03 47.64 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 13 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 14 C 0.19 9.70 5.05 86.36 0.44 10.13 16 15 C -0.14 -6.03 5.77 30.67 0.18 -5.85 16 16 C 0.16 5.89 2.21 45.02 0.10 5.99 16 17 H 0.08 2.96 7.58 -2.39 -0.02 2.94 16 18 N -0.69 -25.10 3.58 -444.88 -1.59 -26.69 16 19 C 0.56 20.73 7.78 86.91 0.68 21.41 16 20 O -0.56 -22.55 15.94 -3.72 -0.06 -22.61 16 21 C 0.10 3.12 6.75 42.30 0.29 3.41 16 22 C -0.14 -3.66 9.54 22.36 0.21 -3.44 16 23 C -0.05 -0.87 9.88 22.48 0.22 -0.65 16 24 C -0.10 -2.16 5.75 -21.22 -0.12 -2.28 16 25 C -0.10 -1.31 9.77 22.31 0.22 -1.09 16 26 C -0.10 -1.21 9.96 22.07 0.22 -0.99 16 27 C -0.09 -1.43 9.94 22.04 0.22 -1.21 16 28 C -0.11 -2.68 9.99 22.38 0.22 -2.46 16 29 C 0.10 2.65 6.61 40.47 0.27 2.92 16 30 N -0.47 -15.41 9.47 -177.78 -1.68 -17.09 16 31 H 0.05 1.34 7.54 -2.39 -0.02 1.32 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 34 H 0.01 0.51 6.64 -2.39 -0.02 0.50 16 35 H 0.06 2.44 7.94 -2.39 -0.02 2.42 16 36 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 37 H -0.01 -0.49 7.74 -2.39 -0.02 -0.51 16 38 H 0.05 2.87 6.04 -2.39 -0.01 2.86 16 39 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 41 H 0.41 15.44 6.03 -92.71 -0.56 14.88 16 42 H 0.15 3.68 7.60 -2.91 -0.02 3.65 16 43 H 0.19 1.75 8.06 -2.91 -0.02 1.73 16 44 H 0.17 0.97 8.06 -2.92 -0.02 0.95 16 45 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 46 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 47 H 0.13 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -73.76 379.09 2.72 -71.03 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.43 Total: 27.47 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 5.46 Total: 9.84 kcal Atomic # 7 Polarization: -128.25 SS G_CDS: -5.13 Total: -133.38 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.06 Total: -22.61 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -73.76 2.72 -71.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944307604.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.084 kcal (2) G-P(sol) polarization free energy of solvation -73.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds