Wall clock time and date at job start Tue Mar 31 2020 22:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.49682 * 2 1 4 4 C 1.53194 * 109.52449 * 239.91859 * 2 1 3 5 5 N 1.46927 * 108.77701 * 185.39619 * 4 2 1 6 6 C 1.36932 * 120.63143 * 233.58662 * 5 4 2 7 7 H 1.08000 * 120.00020 * 27.68231 * 6 5 4 8 8 C 1.38811 * 120.00218 * 207.69085 * 6 5 4 9 9 N 1.31617 * 119.99844 * 17.36155 * 8 6 5 10 10 Si 1.86798 * 120.00102 * 197.36847 * 8 6 5 11 11 H 1.48506 * 109.47247 * 89.99675 * 10 8 6 12 12 H 1.48503 * 109.47139 * 209.99208 * 10 8 6 13 13 H 1.48498 * 109.47148 * 329.99469 * 10 8 6 14 14 C 1.46926 * 118.73548 * 53.61429 * 5 4 2 15 15 C 1.53201 * 108.76447 * 306.37684 * 14 5 4 16 16 C 1.53038 * 109.49801 * 120.06771 * 2 1 3 17 17 H 1.09004 * 109.46488 * 61.33878 * 16 2 1 18 18 N 1.46500 * 109.46062 * 301.36419 * 16 2 1 19 19 C 1.34781 * 119.99882 * 154.97195 * 18 16 2 20 20 O 1.21498 * 120.00279 * 0.02562 * 19 18 16 21 21 C 1.48278 * 119.99673 * 180.02562 * 19 18 16 22 22 C 1.40279 * 119.23726 * 180.02562 * 21 19 18 23 23 C 1.36509 * 119.81154 * 179.71708 * 22 21 19 24 24 C 1.40752 * 118.24584 * 0.25535 * 23 22 21 25 25 C 1.40413 * 121.27411 * 180.02562 * 24 23 22 26 26 C 1.36137 * 119.65103 * 179.97438 * 25 24 23 27 27 C 1.39435 * 120.91370 * 0.02562 * 26 25 24 28 28 C 1.35996 * 121.08442 * 359.97438 * 27 26 25 29 29 C 1.40834 * 119.73659 * 359.97438 * 28 27 26 30 30 N 1.31883 * 119.24430 * 0.22520 * 21 19 18 31 31 H 1.09003 * 109.46929 * 299.93103 * 1 2 3 32 32 H 1.08997 * 109.47639 * 59.93336 * 1 2 3 33 33 H 1.09007 * 109.47441 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.58755 * 305.18785 * 4 2 1 35 35 H 1.09006 * 109.58451 * 65.60670 * 4 2 1 36 36 H 0.96999 * 119.99986 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.59032 * 66.17804 * 14 5 4 38 38 H 1.09000 * 109.58494 * 186.60464 * 14 5 4 39 39 H 1.08992 * 109.50690 * 294.70627 * 15 14 5 40 40 H 1.08999 * 109.48726 * 174.60264 * 15 14 5 41 41 H 0.96997 * 120.00051 * 334.97986 * 18 16 2 42 42 H 1.07995 * 120.09560 * 359.97438 * 22 21 19 43 43 H 1.08002 * 120.87199 * 180.22937 * 23 22 21 44 44 H 1.08006 * 120.17808 * 359.96416 * 25 24 23 45 45 H 1.08000 * 119.54714 * 180.02562 * 26 25 24 46 46 H 1.07994 * 119.46189 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.13324 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0419 -0.7237 -1.2494 5 7 3.5053 -0.8283 -1.1690 6 6 4.2943 -0.3783 -2.1937 7 1 3.9471 0.4212 -2.8314 8 6 5.5401 -0.9497 -2.4129 9 7 5.8294 -2.1201 -1.8850 10 14 6.8063 -0.0575 -3.4570 11 1 7.6358 0.8171 -2.5895 12 1 7.6771 -1.0508 -4.1355 13 1 6.1127 0.7706 -4.4760 14 6 4.1059 -1.4256 0.0315 15 6 3.5708 -0.6937 1.2665 16 6 2.0408 -0.7228 1.2485 17 1 1.6973 -1.7572 1.2354 18 7 1.5260 -0.0528 2.4453 19 6 1.3974 -0.7382 3.5986 20 8 1.7089 -1.9117 3.6459 21 6 0.8758 -0.0602 4.8098 22 6 0.7491 -0.7887 6.0018 23 6 0.2756 -0.1746 7.1254 24 6 -0.0778 1.1853 7.0425 25 6 -0.5709 1.8795 8.1589 26 6 -0.9022 3.1948 8.0418 27 6 -0.7593 3.8640 6.8269 28 6 -0.2850 3.2243 5.7244 29 6 0.0698 1.8638 5.8048 30 7 0.5380 1.2128 4.7404 31 1 -0.3633 0.5128 0.8906 32 1 -0.3634 0.5148 -0.8893 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6063 -1.7217 -1.2979 35 1 1.7643 -0.1580 -2.1389 36 1 6.7001 -2.5193 -2.0379 37 1 3.8386 -2.4808 0.0875 38 1 5.1901 -1.3230 -0.0127 39 1 3.9152 0.3403 1.2543 40 1 3.9336 -1.1880 2.1677 41 1 1.2775 0.8841 2.4076 42 1 1.0292 -1.8313 6.0318 43 1 0.1746 -0.7182 8.0532 44 1 -0.6870 1.3728 9.1057 45 1 -1.2809 3.7273 8.9016 46 1 -1.0296 4.9074 6.7602 47 1 -0.1802 3.7577 4.7912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944307605.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:52 Heat of formation + Delta-G solvation = 36.741274 kcal Electronic energy + Delta-G solvation = -28762.341031 eV Core-core repulsion = 24910.166481 eV Total energy + Delta-G solvation = -3852.174550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.26681 -39.67898 -37.84193 -36.96144 -34.60202 -33.88860 -32.60194 -31.25111 -30.97727 -30.42392 -29.61410 -26.03784 -25.69062 -24.64116 -23.89151 -22.46117 -22.22374 -20.97746 -20.52912 -19.50936 -18.37901 -17.88915 -17.48675 -16.65305 -15.83617 -15.56209 -15.24757 -14.95709 -14.78279 -14.69507 -14.22904 -14.10688 -13.85160 -13.62201 -13.45805 -13.43349 -13.17461 -12.76950 -12.60760 -12.13779 -12.05029 -11.93744 -11.86072 -11.44063 -11.27351 -11.04093 -10.94360 -10.79455 -10.64626 -10.35766 -10.26344 -10.18342 -9.95493 -9.76871 -9.75378 -9.42678 -9.14274 -8.70101 -8.61752 -8.38971 -6.66444 -5.75948 -3.18555 -0.11309 0.35682 1.60032 2.23168 3.13974 3.18809 3.40216 3.46854 3.48046 3.82949 3.85832 4.18642 4.40703 4.44921 4.51497 4.61433 4.77256 4.80703 4.98582 5.11819 5.17585 5.34859 5.39204 5.43853 5.55898 5.57495 5.63133 5.65691 5.70873 5.93353 5.96002 6.02307 6.03488 6.11727 6.15113 6.28916 6.32317 6.40724 6.43176 6.49879 6.63997 6.70695 6.81148 6.94481 6.99737 7.36251 7.40598 7.70053 7.77733 7.82323 8.33607 8.47343 9.23417 9.86866 10.43432 11.32550 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019750 B = 0.002360 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.353676 B =11860.259731 C =12114.067519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 H 0.072 0.928 4 C 0.155 3.845 5 N -0.593 5.593 6 C -0.253 4.253 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.901 5.901 10 Si 0.902 3.098 11 H -0.288 1.288 12 H -0.292 1.292 13 H -0.279 1.279 14 C 0.174 3.826 15 C -0.148 4.148 16 C 0.155 3.845 17 H 0.084 0.916 18 N -0.697 5.697 19 C 0.562 3.438 20 O -0.530 6.530 21 C 0.125 3.875 22 C -0.124 4.124 23 C -0.064 4.064 24 C -0.090 4.090 25 C -0.101 4.101 26 C -0.110 4.110 27 C -0.106 4.106 28 C -0.084 4.084 29 C 0.124 3.876 30 N -0.444 5.444 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.021 0.979 35 H 0.058 0.942 36 H 0.254 0.746 37 H 0.021 0.979 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.405 0.595 42 H 0.152 0.848 43 H 0.146 0.854 44 H 0.132 0.868 45 H 0.128 0.872 46 H 0.131 0.869 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.396 9.734 20.866 27.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 H 0.090 0.910 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.383 4.383 7 H 0.084 0.916 8 C -0.197 4.197 9 N -0.545 5.545 10 Si 0.732 3.268 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.204 1.204 14 C 0.047 3.953 15 C -0.188 4.188 16 C 0.052 3.948 17 H 0.102 0.898 18 N -0.347 5.347 19 C 0.346 3.654 20 O -0.406 6.406 21 C -0.029 4.029 22 C -0.145 4.145 23 C -0.090 4.090 24 C -0.092 4.092 25 C -0.119 4.119 26 C -0.128 4.128 27 C -0.126 4.126 28 C -0.103 4.103 29 C 0.000 4.000 30 N -0.156 5.156 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.039 0.961 38 H 0.108 0.892 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.241 0.759 42 H 0.170 0.830 43 H 0.163 0.837 44 H 0.149 0.851 45 H 0.146 0.854 46 H 0.149 0.851 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.934 9.299 20.029 26.658 hybrid contribution 0.515 0.459 0.387 0.790 sum -14.419 9.757 20.416 26.832 Atomic orbital electron populations 1.21779 0.95766 1.01561 1.00957 1.21968 0.94564 1.00667 0.96313 0.90969 1.20898 0.85936 0.96631 0.93739 1.44109 0.99309 1.71444 1.16624 1.19183 0.98198 1.12322 1.08561 0.91604 1.25046 0.99930 0.95363 0.99329 1.70038 1.21847 1.14572 1.48077 0.86291 0.81686 0.78899 0.79890 1.21484 1.21792 1.20449 1.20772 0.99466 0.93099 0.81936 1.22592 0.93694 1.01671 1.00843 1.21164 0.94698 0.96923 0.82049 0.89806 1.46174 1.63735 1.14935 1.09830 1.17888 0.78748 0.86114 0.82683 1.90799 1.50220 1.15337 1.84218 1.21558 0.96658 0.89996 0.94717 1.21804 0.98345 1.02401 0.91936 1.21472 0.95471 0.93043 0.98996 1.18987 1.00419 0.94837 0.94993 1.21004 0.98620 0.94833 0.97490 1.21001 0.99158 0.94683 0.97976 1.20940 0.98654 1.00491 0.92490 1.20914 0.97750 0.91864 0.99739 1.18867 0.98027 0.94590 0.88494 1.67848 1.09074 1.08362 1.30270 0.93340 0.92704 0.92922 0.96137 0.92337 0.93597 0.96076 0.89178 0.92547 0.92746 0.75908 0.83030 0.83674 0.85055 0.85384 0.85080 0.84326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.03 37.16 0.34 -1.67 16 2 C -0.11 -1.95 2.46 -90.50 -0.22 -2.17 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.16 3.23 5.80 -3.71 -0.02 3.20 16 5 N -0.59 -14.90 2.99 -172.31 -0.52 -15.42 16 6 C -0.25 -6.95 9.58 -15.06 -0.14 -7.09 16 7 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 8 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 9 N -0.90 -26.46 11.19 55.49 0.62 -25.84 16 10 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.17 4.27 5.31 -3.71 -0.02 4.25 16 15 C -0.15 -3.02 5.65 -26.60 -0.15 -3.17 16 16 C 0.15 2.78 1.88 -67.89 -0.13 2.65 16 17 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 18 N -0.70 -10.86 4.35 -54.57 -0.24 -11.10 16 19 C 0.56 9.09 7.78 -12.13 -0.09 9.00 16 20 O -0.53 -10.08 15.94 5.37 0.09 -9.99 16 21 C 0.12 1.71 6.75 -82.95 -0.56 1.15 16 22 C -0.12 -1.42 9.54 -39.44 -0.38 -1.79 16 23 C -0.06 -0.57 9.88 -39.26 -0.39 -0.96 16 24 C -0.09 -0.87 5.75 -106.72 -0.61 -1.48 16 25 C -0.10 -0.71 9.77 -39.52 -0.39 -1.09 16 26 C -0.11 -0.68 9.96 -39.89 -0.40 -1.07 16 27 C -0.11 -0.71 9.94 -39.94 -0.40 -1.11 16 28 C -0.08 -0.75 9.99 -39.41 -0.39 -1.15 16 29 C 0.12 1.39 6.61 -84.85 -0.56 0.83 16 30 N -0.44 -5.75 9.47 -7.54 -0.07 -5.82 16 31 H 0.05 0.62 7.36 -51.93 -0.38 0.24 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 36 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 2.47 6.04 -51.93 -0.31 2.16 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.41 5.68 7.61 -40.82 -0.31 5.37 16 42 H 0.15 1.64 7.60 -52.49 -0.40 1.24 16 43 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 45 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 46 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 47 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 383.02 15.07 5.77 5.77 Total: -1.00 -32.32 383.02 -10.81 -43.13 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.83 Total: 4.17 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -4.60 Total: -1.71 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.20 Total: -58.18 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.32 -10.81 -43.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944307605.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.872 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds