Wall clock time and date at job start Tue Mar 31 2020 22:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.49682 * 2 1 4 4 C 1.53194 * 109.52449 * 239.91859 * 2 1 3 5 5 N 1.46927 * 108.77701 * 185.39619 * 4 2 1 6 6 C 1.36932 * 120.63143 * 233.58662 * 5 4 2 7 7 H 1.08000 * 120.00020 * 27.68231 * 6 5 4 8 8 C 1.38811 * 120.00218 * 207.69085 * 6 5 4 9 9 N 1.31617 * 119.99844 * 17.36155 * 8 6 5 10 10 Si 1.86798 * 120.00102 * 197.36847 * 8 6 5 11 11 H 1.48506 * 109.47247 * 89.99675 * 10 8 6 12 12 H 1.48503 * 109.47139 * 209.99208 * 10 8 6 13 13 H 1.48498 * 109.47148 * 329.99469 * 10 8 6 14 14 C 1.46926 * 118.73548 * 53.61429 * 5 4 2 15 15 C 1.53201 * 108.76447 * 306.37684 * 14 5 4 16 16 C 1.53038 * 109.49801 * 120.06771 * 2 1 3 17 17 H 1.09004 * 109.46488 * 61.33878 * 16 2 1 18 18 N 1.46500 * 109.46062 * 301.36419 * 16 2 1 19 19 C 1.34781 * 119.99882 * 154.97195 * 18 16 2 20 20 O 1.21498 * 120.00279 * 0.02562 * 19 18 16 21 21 C 1.48278 * 119.99673 * 180.02562 * 19 18 16 22 22 C 1.40279 * 119.23726 * 180.02562 * 21 19 18 23 23 C 1.36509 * 119.81154 * 179.71708 * 22 21 19 24 24 C 1.40752 * 118.24584 * 0.25535 * 23 22 21 25 25 C 1.40413 * 121.27411 * 180.02562 * 24 23 22 26 26 C 1.36137 * 119.65103 * 179.97438 * 25 24 23 27 27 C 1.39435 * 120.91370 * 0.02562 * 26 25 24 28 28 C 1.35996 * 121.08442 * 359.97438 * 27 26 25 29 29 C 1.40834 * 119.73659 * 359.97438 * 28 27 26 30 30 N 1.31883 * 119.24430 * 0.22520 * 21 19 18 31 31 H 1.09003 * 109.46929 * 299.93103 * 1 2 3 32 32 H 1.08997 * 109.47639 * 59.93336 * 1 2 3 33 33 H 1.09007 * 109.47441 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.58755 * 305.18785 * 4 2 1 35 35 H 1.09006 * 109.58451 * 65.60670 * 4 2 1 36 36 H 0.96999 * 119.99986 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.59032 * 66.17804 * 14 5 4 38 38 H 1.09000 * 109.58494 * 186.60464 * 14 5 4 39 39 H 1.08992 * 109.50690 * 294.70627 * 15 14 5 40 40 H 1.08999 * 109.48726 * 174.60264 * 15 14 5 41 41 H 0.96997 * 120.00051 * 334.97986 * 18 16 2 42 42 H 1.07995 * 120.09560 * 359.97438 * 22 21 19 43 43 H 1.08002 * 120.87199 * 180.22937 * 23 22 21 44 44 H 1.08006 * 120.17808 * 359.96416 * 25 24 23 45 45 H 1.08000 * 119.54714 * 180.02562 * 26 25 24 46 46 H 1.07994 * 119.46189 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.13324 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0419 -0.7237 -1.2494 5 7 3.5053 -0.8283 -1.1690 6 6 4.2943 -0.3783 -2.1937 7 1 3.9471 0.4212 -2.8314 8 6 5.5401 -0.9497 -2.4129 9 7 5.8294 -2.1201 -1.8850 10 14 6.8063 -0.0575 -3.4570 11 1 7.6358 0.8171 -2.5895 12 1 7.6771 -1.0508 -4.1355 13 1 6.1127 0.7706 -4.4760 14 6 4.1059 -1.4256 0.0315 15 6 3.5708 -0.6937 1.2665 16 6 2.0408 -0.7228 1.2485 17 1 1.6973 -1.7572 1.2354 18 7 1.5260 -0.0528 2.4453 19 6 1.3974 -0.7382 3.5986 20 8 1.7089 -1.9117 3.6459 21 6 0.8758 -0.0602 4.8098 22 6 0.7491 -0.7887 6.0018 23 6 0.2756 -0.1746 7.1254 24 6 -0.0778 1.1853 7.0425 25 6 -0.5709 1.8795 8.1589 26 6 -0.9022 3.1948 8.0418 27 6 -0.7593 3.8640 6.8269 28 6 -0.2850 3.2243 5.7244 29 6 0.0698 1.8638 5.8048 30 7 0.5380 1.2128 4.7404 31 1 -0.3633 0.5128 0.8906 32 1 -0.3634 0.5148 -0.8893 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6063 -1.7217 -1.2979 35 1 1.7643 -0.1580 -2.1389 36 1 6.7001 -2.5193 -2.0379 37 1 3.8386 -2.4808 0.0875 38 1 5.1901 -1.3230 -0.0127 39 1 3.9152 0.3403 1.2543 40 1 3.9336 -1.1880 2.1677 41 1 1.2775 0.8841 2.4076 42 1 1.0292 -1.8313 6.0318 43 1 0.1746 -0.7182 8.0532 44 1 -0.6870 1.3728 9.1057 45 1 -1.2809 3.7273 8.9016 46 1 -1.0296 4.9074 6.7602 47 1 -0.1802 3.7577 4.7912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944307605.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:50 Heat of formation + Delta-G solvation = 17.510123 kcal Electronic energy + Delta-G solvation = -28763.174957 eV Core-core repulsion = 24910.166481 eV Total energy + Delta-G solvation = -3853.008475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.08621 -40.93328 -39.28879 -37.82207 -36.27279 -34.73771 -34.10957 -32.95983 -32.09801 -31.35335 -30.86641 -27.44731 -27.28595 -25.92863 -24.71780 -23.79173 -23.08144 -22.67613 -21.80113 -21.07195 -19.30526 -18.90755 -18.62463 -18.17078 -17.21031 -16.77270 -16.41783 -16.35767 -15.72417 -15.63191 -15.49048 -15.36927 -15.20389 -14.97302 -14.70500 -14.53955 -14.39577 -14.14659 -14.03114 -13.62819 -13.07997 -13.04118 -12.75754 -12.70317 -12.63814 -12.60058 -12.45470 -12.34013 -12.10249 -12.03513 -11.72053 -11.64895 -11.60545 -11.46000 -11.21650 -10.62997 -10.58008 -10.11673 -9.80911 -9.27186 -8.73189 -7.88131 -5.34258 -0.85952 -0.35116 0.92083 1.37582 1.46894 1.48642 1.57564 1.97244 2.21248 2.50809 2.92635 3.08043 3.27216 3.55499 3.60494 3.67686 3.72835 3.82351 3.88816 3.99791 4.13149 4.15732 4.25120 4.34324 4.38316 4.51060 4.57219 4.68276 4.70053 4.77200 4.82951 4.85608 4.92228 4.97627 5.03401 5.06977 5.09374 5.11804 5.26139 5.35520 5.38005 5.44211 5.46809 5.48588 5.49831 5.62437 5.67814 5.86429 6.34695 6.37118 6.67497 7.08566 7.11913 7.82497 8.35708 9.19006 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019750 B = 0.002360 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.353676 B =11860.259731 C =12114.067519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.100 4.100 3 H 0.077 0.923 4 C 0.151 3.849 5 N -0.609 5.609 6 C -0.261 4.261 7 H 0.073 0.927 8 C -0.054 4.054 9 N -0.937 5.937 10 Si 0.970 3.030 11 H -0.287 1.287 12 H -0.297 1.297 13 H -0.265 1.265 14 C 0.184 3.816 15 C -0.132 4.132 16 C 0.167 3.833 17 H 0.063 0.937 18 N -0.689 5.689 19 C 0.562 3.438 20 O -0.567 6.567 21 C 0.099 3.901 22 C -0.145 4.145 23 C -0.047 4.047 24 C -0.102 4.102 25 C -0.102 4.102 26 C -0.103 4.103 27 C -0.093 4.093 28 C -0.108 4.108 29 C 0.097 3.903 30 N -0.457 5.457 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.013 0.987 35 H 0.067 0.933 36 H 0.250 0.750 37 H -0.007 1.007 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.415 0.585 42 H 0.149 0.851 43 H 0.184 0.816 44 H 0.163 0.837 45 H 0.163 0.837 46 H 0.160 0.840 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.657 12.844 23.316 31.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.121 4.121 3 H 0.095 0.905 4 C 0.025 3.975 5 N -0.332 5.332 6 C -0.391 4.391 7 H 0.091 0.909 8 C -0.249 4.249 9 N -0.583 5.583 10 Si 0.798 3.202 11 H -0.213 1.213 12 H -0.223 1.223 13 H -0.189 1.189 14 C 0.057 3.943 15 C -0.173 4.173 16 C 0.062 3.938 17 H 0.081 0.919 18 N -0.338 5.338 19 C 0.347 3.653 20 O -0.445 6.445 21 C -0.053 4.053 22 C -0.166 4.166 23 C -0.073 4.073 24 C -0.104 4.104 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.112 4.112 28 C -0.127 4.127 29 C -0.027 4.027 30 N -0.169 5.169 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.011 0.989 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.253 0.747 42 H 0.166 0.834 43 H 0.201 0.799 44 H 0.181 0.819 45 H 0.181 0.819 46 H 0.178 0.822 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.239 12.450 22.482 30.945 hybrid contribution 1.100 -0.387 -0.222 1.187 sum -16.139 12.063 22.260 30.025 Atomic orbital electron populations 1.21704 0.92841 1.01934 1.02647 1.21769 0.96803 0.99839 0.93647 0.90479 1.21073 0.83485 0.96873 0.96054 1.44348 1.01131 1.71413 1.16327 1.19562 0.98715 1.12158 1.08675 0.90904 1.25864 1.01903 0.96043 1.01120 1.70207 1.21958 1.16203 1.49977 0.85228 0.78987 0.77558 0.78452 1.21342 1.22330 1.18901 1.20473 0.97729 0.92180 0.83909 1.22345 0.95757 1.00808 0.98357 1.20803 0.92741 0.96431 0.83784 0.91870 1.45930 1.63595 1.15243 1.09068 1.18342 0.77781 0.85744 0.83384 1.90766 1.51828 1.17000 1.84927 1.21156 0.99206 0.90803 0.94173 1.21828 1.00080 1.02402 0.92256 1.21871 0.93091 0.92980 0.99323 1.19312 1.00450 0.95234 0.95362 1.21391 0.97617 0.95329 0.97694 1.21485 0.97414 0.94496 0.98718 1.21366 0.96258 1.01762 0.91864 1.21088 0.99313 0.91240 1.01044 1.19304 0.98803 0.95660 0.88902 1.67722 1.09529 1.08003 1.31658 0.91798 0.90834 0.93246 0.96882 0.91445 0.94136 0.98910 0.92410 0.92309 0.93357 0.74717 0.83372 0.79921 0.81942 0.81899 0.82211 0.84173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 9.03 71.98 0.65 -2.89 16 2 C -0.10 -3.38 2.46 -10.72 -0.03 -3.41 16 3 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 4 C 0.15 6.34 5.80 86.36 0.50 6.84 16 5 N -0.61 -31.57 2.99 -699.06 -2.09 -33.66 16 6 C -0.26 -14.56 9.58 84.03 0.81 -13.76 16 7 H 0.07 3.89 7.89 -2.91 -0.02 3.87 16 8 C -0.05 -3.09 4.91 84.86 0.42 -2.68 16 9 N -0.94 -57.38 11.19 21.65 0.24 -57.14 16 10 Si 0.97 45.71 29.59 68.60 2.03 47.74 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 13 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 14 C 0.18 9.57 5.31 86.37 0.46 10.03 16 15 C -0.13 -5.68 5.65 30.68 0.17 -5.50 16 16 C 0.17 6.17 1.88 45.02 0.08 6.26 16 17 H 0.06 2.63 7.58 -2.38 -0.02 2.62 16 18 N -0.69 -21.89 4.35 -444.86 -1.94 -23.83 16 19 C 0.56 18.95 7.78 86.91 0.68 19.63 16 20 O -0.57 -22.81 15.94 -3.71 -0.06 -22.87 16 21 C 0.10 2.78 6.75 42.31 0.29 3.07 16 22 C -0.14 -3.32 9.54 22.36 0.21 -3.11 16 23 C -0.05 -0.75 9.88 22.48 0.22 -0.53 16 24 C -0.10 -1.72 5.75 -21.22 -0.12 -1.84 16 25 C -0.10 -0.99 9.77 22.31 0.22 -0.78 16 26 C -0.10 -0.77 9.96 22.07 0.22 -0.55 16 27 C -0.09 -0.90 9.94 22.04 0.22 -0.68 16 28 C -0.11 -1.74 9.99 22.38 0.22 -1.51 16 29 C 0.10 2.08 6.61 40.47 0.27 2.35 16 30 N -0.46 -11.86 9.47 -177.76 -1.68 -13.54 16 31 H 0.06 1.52 7.36 -2.39 -0.02 1.51 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.07 2.68 7.93 -2.38 -0.02 2.67 16 36 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 37 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 38 H 0.06 3.37 6.04 -2.39 -0.01 3.35 16 39 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.42 11.59 7.61 -92.71 -0.71 10.88 16 42 H 0.15 3.36 7.60 -2.91 -0.02 3.33 16 43 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 44 H 0.16 0.55 8.06 -2.91 -0.02 0.52 16 45 H 0.16 0.13 8.06 -2.91 -0.02 0.11 16 46 H 0.16 0.59 8.06 -2.91 -0.02 0.57 16 47 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -74.60 383.02 2.26 -72.34 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.28 Total: 20.03 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 5.49 Total: 10.94 kcal Atomic # 7 Polarization: -122.70 SS G_CDS: -5.47 Total: -128.17 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.06 Total: -22.87 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -74.60 2.26 -72.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944307605.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.848 kcal (2) G-P(sol) polarization free energy of solvation -74.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds