Wall clock time and date at job start Tue Mar 31 2020 22:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.49983 * 2 1 4 4 C 1.53194 * 109.49737 * 120.06497 * 2 1 3 5 5 N 1.46929 * 108.77338 * 174.58832 * 4 2 1 6 6 C 1.36938 * 120.63009 * 126.37152 * 5 4 2 7 7 H 1.07996 * 120.00094 * 332.58562 * 6 5 4 8 8 C 1.38813 * 119.99821 * 152.58705 * 6 5 4 9 9 N 1.31611 * 120.00201 * 342.49359 * 8 6 5 10 10 Si 1.86804 * 119.99923 * 162.76680 * 8 6 5 11 11 H 1.48497 * 109.46990 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47259 * 119.99842 * 10 8 6 13 13 H 1.48499 * 109.47133 * 240.00312 * 10 8 6 14 14 C 1.46929 * 118.73866 * 306.64350 * 5 4 2 15 15 C 1.52760 * 109.00960 * 53.30862 * 14 5 4 16 16 C 1.53039 * 109.49629 * 239.90304 * 2 1 3 17 17 H 1.08994 * 109.46088 * 298.69709 * 16 2 1 18 18 N 1.46494 * 109.46176 * 58.66545 * 16 2 1 19 19 C 1.34770 * 120.00365 * 205.00294 * 18 16 2 20 20 O 1.21499 * 119.99750 * 359.97438 * 19 18 16 21 21 C 1.48271 * 120.00396 * 179.97438 * 19 18 16 22 22 C 1.40279 * 119.24383 * 179.97438 * 21 19 18 23 23 C 1.36509 * 119.82396 * 179.97438 * 22 21 19 24 24 C 1.40765 * 118.23956 * 359.97438 * 23 22 21 25 25 C 1.40412 * 121.28039 * 180.02562 * 24 23 22 26 26 C 1.36138 * 119.64436 * 180.02562 * 25 24 23 27 27 C 1.39428 * 120.91997 * 359.91758 * 26 25 24 28 28 C 1.35997 * 121.08266 * 0.06528 * 27 26 25 29 29 C 1.40823 * 119.73367 * 359.97438 * 28 27 26 30 30 N 1.31878 * 119.24243 * 359.72363 * 21 19 18 31 31 H 1.09005 * 109.47218 * 299.93366 * 1 2 3 32 32 H 1.08993 * 109.47324 * 59.93271 * 1 2 3 33 33 H 1.09004 * 109.47251 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.58900 * 54.80367 * 4 2 1 35 35 H 1.08997 * 109.70721 * 294.44191 * 4 2 1 36 36 H 0.97008 * 119.99943 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.58872 * 173.15048 * 14 5 4 38 38 H 1.09003 * 109.58399 * 293.56745 * 14 5 4 39 39 H 1.08994 * 109.56594 * 185.55179 * 15 14 5 40 40 H 1.09001 * 109.38476 * 65.51623 * 15 14 5 41 41 H 0.97010 * 119.99892 * 24.99271 * 18 16 2 42 42 H 1.08004 * 120.09104 * 359.97009 * 22 21 19 43 43 H 1.07995 * 120.87844 * 180.02562 * 23 22 21 44 44 H 1.07993 * 120.17897 * 359.96130 * 25 24 23 45 45 H 1.08001 * 119.53815 * 179.97438 * 26 25 24 46 46 H 1.07999 * 119.46388 * 180.02562 * 27 26 25 47 47 H 1.08003 * 120.13286 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 1.2498 5 7 3.5046 -0.8287 1.1698 6 6 4.2936 -0.3778 2.1942 7 1 3.9448 0.4195 2.8337 8 6 5.5416 -0.9457 2.4106 9 7 5.8329 -2.1155 1.8827 10 14 6.8051 -0.0528 3.4576 11 1 6.2333 1.2316 3.9354 12 1 7.1679 -0.8978 4.6235 13 1 8.0186 0.2178 2.6456 14 6 4.1055 -1.4215 -0.0328 15 6 3.5708 -0.6953 -1.2658 16 6 2.0407 -0.7234 -1.2481 17 1 1.6967 -1.7576 -1.2347 18 7 1.5265 -0.0537 -2.4452 19 6 1.3984 -0.7392 -3.5985 20 8 1.7098 -1.9126 -3.6454 21 6 0.8774 -0.0614 -4.8099 22 6 0.7511 -0.7901 -6.0020 23 6 0.2722 -0.1780 -7.1243 24 6 -0.0826 1.1817 -7.0415 25 6 -0.5822 1.8739 -8.1563 26 6 -0.9144 3.1889 -8.0389 27 6 -0.7673 3.8595 -6.8254 28 6 -0.2870 3.2217 -5.7245 29 6 0.0688 1.8615 -5.8049 30 7 0.5387 1.2112 -4.7408 31 1 -0.3634 0.5128 0.8906 32 1 -0.3633 0.5148 -0.8893 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6053 -1.7213 1.2985 35 1 1.7637 -0.1596 2.1403 36 1 6.7052 -2.5121 2.0337 37 1 5.1895 -1.3159 0.0103 38 1 3.8413 -2.4774 -0.0908 39 1 3.9334 -1.1902 -2.1667 40 1 3.9159 0.3386 -1.2548 41 1 1.2781 0.8833 -2.4078 42 1 1.0319 -1.8325 -6.0318 43 1 0.1676 -0.7228 -8.0509 44 1 -0.7012 1.3662 -9.1020 45 1 -1.2981 3.7198 -8.8976 46 1 -1.0386 4.9027 -6.7586 47 1 -0.1797 3.7559 -4.7920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944307606.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:55 Heat of formation + Delta-G solvation = 36.772907 kcal Electronic energy + Delta-G solvation = -28763.440591 eV Core-core repulsion = 24911.267413 eV Total energy + Delta-G solvation = -3852.173178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.26727 -39.68304 -37.84965 -36.96353 -34.60273 -33.88856 -32.60378 -31.26743 -30.98174 -30.42482 -29.62395 -26.04418 -25.69107 -24.64149 -23.89105 -22.46198 -22.22883 -20.97698 -20.53250 -19.50665 -18.37947 -17.88986 -17.48725 -16.65498 -15.83821 -15.56314 -15.24820 -14.95763 -14.78349 -14.69502 -14.23168 -14.10697 -13.85280 -13.62408 -13.46092 -13.43652 -13.17739 -12.77518 -12.60801 -12.13918 -12.05073 -11.93826 -11.86086 -11.44367 -11.27479 -11.05175 -10.94371 -10.80884 -10.63079 -10.35728 -10.26438 -10.18100 -9.95402 -9.77003 -9.75170 -9.42652 -9.14326 -8.70194 -8.61895 -8.39254 -6.66372 -5.76084 -3.18340 -0.11352 0.35646 1.59968 2.23114 3.13919 3.18724 3.39319 3.47041 3.49119 3.82925 3.85749 4.18632 4.40640 4.44874 4.51490 4.61381 4.77230 4.80658 4.98536 5.11771 5.17341 5.34726 5.39168 5.43967 5.55755 5.57460 5.62767 5.65495 5.70824 5.93137 5.95921 6.02255 6.03260 6.11681 6.14821 6.28795 6.32136 6.41082 6.43142 6.49850 6.63755 6.70853 6.81234 6.94542 6.99712 7.36162 7.40633 7.69930 7.77600 7.82471 8.33503 8.47100 9.23328 9.86967 10.43352 11.32502 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019761 B = 0.002360 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.571726 B =11859.166624 C =12113.842177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 H 0.072 0.928 4 C 0.155 3.845 5 N -0.593 5.593 6 C -0.252 4.252 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.901 5.901 10 Si 0.901 3.099 11 H -0.278 1.278 12 H -0.290 1.290 13 H -0.289 1.289 14 C 0.173 3.827 15 C -0.147 4.147 16 C 0.155 3.845 17 H 0.084 0.916 18 N -0.697 5.697 19 C 0.562 3.438 20 O -0.530 6.530 21 C 0.125 3.875 22 C -0.124 4.124 23 C -0.064 4.064 24 C -0.090 4.090 25 C -0.101 4.101 26 C -0.110 4.110 27 C -0.106 4.106 28 C -0.084 4.084 29 C 0.124 3.876 30 N -0.444 5.444 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.021 0.979 35 H 0.058 0.942 36 H 0.253 0.747 37 H 0.090 0.910 38 H 0.021 0.979 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.405 0.595 42 H 0.152 0.848 43 H 0.146 0.854 44 H 0.132 0.868 45 H 0.128 0.872 46 H 0.131 0.869 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.431 9.752 -20.889 27.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 H 0.090 0.910 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.382 4.382 7 H 0.084 0.916 8 C -0.197 4.197 9 N -0.545 5.545 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.217 1.217 13 H -0.216 1.216 14 C 0.047 3.953 15 C -0.188 4.188 16 C 0.052 3.948 17 H 0.102 0.898 18 N -0.347 5.347 19 C 0.346 3.654 20 O -0.406 6.406 21 C -0.029 4.029 22 C -0.145 4.145 23 C -0.090 4.090 24 C -0.092 4.092 25 C -0.119 4.119 26 C -0.128 4.128 27 C -0.126 4.126 28 C -0.103 4.103 29 C 0.000 4.000 30 N -0.156 5.156 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.039 0.961 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.241 0.759 42 H 0.170 0.830 43 H 0.163 0.837 44 H 0.149 0.851 45 H 0.146 0.854 46 H 0.149 0.851 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.971 9.323 -20.055 26.707 hybrid contribution 0.521 0.447 -0.385 0.787 sum -14.450 9.770 -20.440 26.871 Atomic orbital electron populations 1.21779 0.95762 1.01561 1.00962 1.21966 0.94574 1.00664 0.96308 0.90962 1.20893 0.85916 0.96646 0.93739 1.44100 0.99307 1.71610 1.16480 1.19209 0.98020 1.12486 1.08470 0.91592 1.25037 0.99922 0.95406 0.99317 1.70052 1.21643 1.14694 1.48101 0.86247 0.81738 0.79235 0.79694 1.20275 1.21748 1.21596 1.20676 0.99454 0.93195 0.81969 1.22517 0.93713 1.01697 1.00846 1.21160 0.94696 0.96928 0.82044 0.89801 1.46170 1.63747 1.14933 1.09817 1.17883 0.78747 0.86116 0.82686 1.90800 1.50210 1.15337 1.84230 1.21554 0.96660 0.90000 0.94711 1.21804 0.98338 1.02401 0.91947 1.21473 0.95455 0.93054 0.98997 1.18989 1.00393 0.94842 0.95007 1.21002 0.98597 0.94846 0.97501 1.21000 0.99166 0.94674 0.97977 1.20939 0.98635 1.00494 0.92508 1.20913 0.97727 0.91885 0.99741 1.18867 0.98021 0.94591 0.88505 1.67852 1.09064 1.08381 1.30256 0.92709 0.93331 0.92919 0.96143 0.92334 0.93661 0.89202 0.96124 0.92710 0.92567 0.75904 0.83031 0.83673 0.85055 0.85386 0.85079 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.02 37.16 0.34 -1.67 16 2 C -0.11 -1.95 2.46 -90.50 -0.22 -2.17 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.16 3.23 5.80 -3.71 -0.02 3.20 16 5 N -0.59 -14.90 3.00 -172.58 -0.52 -15.42 16 6 C -0.25 -6.92 9.59 -15.06 -0.14 -7.07 16 7 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 8 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 9 N -0.90 -26.46 11.20 55.49 0.62 -25.84 16 10 Si 0.90 21.81 29.59 -169.99 -5.03 16.78 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 C 0.17 4.26 5.28 -3.93 -0.02 4.24 16 15 C -0.15 -3.02 5.64 -26.83 -0.15 -3.17 16 16 C 0.15 2.78 1.88 -67.89 -0.13 2.65 16 17 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 18 N -0.70 -10.85 4.35 -54.58 -0.24 -11.09 16 19 C 0.56 9.09 7.78 -12.14 -0.09 8.99 16 20 O -0.53 -10.07 15.94 5.37 0.09 -9.99 16 21 C 0.12 1.70 6.75 -82.95 -0.56 1.15 16 22 C -0.12 -1.42 9.54 -39.44 -0.38 -1.79 16 23 C -0.06 -0.57 9.88 -39.25 -0.39 -0.96 16 24 C -0.09 -0.87 5.75 -106.71 -0.61 -1.48 16 25 C -0.10 -0.70 9.77 -39.52 -0.39 -1.09 16 26 C -0.11 -0.67 9.95 -39.89 -0.40 -1.07 16 27 C -0.11 -0.71 9.94 -39.94 -0.40 -1.11 16 28 C -0.08 -0.75 9.99 -39.41 -0.39 -1.15 16 29 C 0.12 1.39 6.61 -84.85 -0.56 0.83 16 30 N -0.44 -5.75 9.47 -7.54 -0.07 -5.82 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.62 7.36 -51.93 -0.38 0.24 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 36 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.09 2.46 6.04 -51.93 -0.31 2.15 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.41 5.67 7.61 -40.82 -0.31 5.36 16 42 H 0.15 1.64 7.60 -52.48 -0.40 1.24 16 43 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 45 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 46 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 47 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -32.36 383.00 -10.82 -43.18 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.83 Total: 4.11 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -4.60 Total: -1.69 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.21 Total: -58.16 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.36 -10.82 -43.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944307606.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.952 kcal (2) G-P(sol) polarization free energy of solvation -32.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds