Wall clock time and date at job start Tue Mar 31 2020 22:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.49983 * 2 1 4 4 C 1.53194 * 109.49737 * 120.06497 * 2 1 3 5 5 N 1.46929 * 108.77338 * 174.58832 * 4 2 1 6 6 C 1.36938 * 120.63009 * 126.37152 * 5 4 2 7 7 H 1.07996 * 120.00094 * 332.58562 * 6 5 4 8 8 C 1.38813 * 119.99821 * 152.58705 * 6 5 4 9 9 N 1.31611 * 120.00201 * 342.49359 * 8 6 5 10 10 Si 1.86804 * 119.99923 * 162.76680 * 8 6 5 11 11 H 1.48497 * 109.46990 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47259 * 119.99842 * 10 8 6 13 13 H 1.48499 * 109.47133 * 240.00312 * 10 8 6 14 14 C 1.46929 * 118.73866 * 306.64350 * 5 4 2 15 15 C 1.52760 * 109.00960 * 53.30862 * 14 5 4 16 16 C 1.53039 * 109.49629 * 239.90304 * 2 1 3 17 17 H 1.08994 * 109.46088 * 298.69709 * 16 2 1 18 18 N 1.46494 * 109.46176 * 58.66545 * 16 2 1 19 19 C 1.34770 * 120.00365 * 205.00294 * 18 16 2 20 20 O 1.21499 * 119.99750 * 359.97438 * 19 18 16 21 21 C 1.48271 * 120.00396 * 179.97438 * 19 18 16 22 22 C 1.40279 * 119.24383 * 179.97438 * 21 19 18 23 23 C 1.36509 * 119.82396 * 179.97438 * 22 21 19 24 24 C 1.40765 * 118.23956 * 359.97438 * 23 22 21 25 25 C 1.40412 * 121.28039 * 180.02562 * 24 23 22 26 26 C 1.36138 * 119.64436 * 180.02562 * 25 24 23 27 27 C 1.39428 * 120.91997 * 359.91758 * 26 25 24 28 28 C 1.35997 * 121.08266 * 0.06528 * 27 26 25 29 29 C 1.40823 * 119.73367 * 359.97438 * 28 27 26 30 30 N 1.31878 * 119.24243 * 359.72363 * 21 19 18 31 31 H 1.09005 * 109.47218 * 299.93366 * 1 2 3 32 32 H 1.08993 * 109.47324 * 59.93271 * 1 2 3 33 33 H 1.09004 * 109.47251 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.58900 * 54.80367 * 4 2 1 35 35 H 1.08997 * 109.70721 * 294.44191 * 4 2 1 36 36 H 0.97008 * 119.99943 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.58872 * 173.15048 * 14 5 4 38 38 H 1.09003 * 109.58399 * 293.56745 * 14 5 4 39 39 H 1.08994 * 109.56594 * 185.55179 * 15 14 5 40 40 H 1.09001 * 109.38476 * 65.51623 * 15 14 5 41 41 H 0.97010 * 119.99892 * 24.99271 * 18 16 2 42 42 H 1.08004 * 120.09104 * 359.97009 * 22 21 19 43 43 H 1.07995 * 120.87844 * 180.02562 * 23 22 21 44 44 H 1.07993 * 120.17897 * 359.96130 * 25 24 23 45 45 H 1.08001 * 119.53815 * 179.97438 * 26 25 24 46 46 H 1.07999 * 119.46388 * 180.02562 * 27 26 25 47 47 H 1.08003 * 120.13286 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 1.2498 5 7 3.5046 -0.8287 1.1698 6 6 4.2936 -0.3778 2.1942 7 1 3.9448 0.4195 2.8337 8 6 5.5416 -0.9457 2.4106 9 7 5.8329 -2.1155 1.8827 10 14 6.8051 -0.0528 3.4576 11 1 6.2333 1.2316 3.9354 12 1 7.1679 -0.8978 4.6235 13 1 8.0186 0.2178 2.6456 14 6 4.1055 -1.4215 -0.0328 15 6 3.5708 -0.6953 -1.2658 16 6 2.0407 -0.7234 -1.2481 17 1 1.6967 -1.7576 -1.2347 18 7 1.5265 -0.0537 -2.4452 19 6 1.3984 -0.7392 -3.5985 20 8 1.7098 -1.9126 -3.6454 21 6 0.8774 -0.0614 -4.8099 22 6 0.7511 -0.7901 -6.0020 23 6 0.2722 -0.1780 -7.1243 24 6 -0.0826 1.1817 -7.0415 25 6 -0.5822 1.8739 -8.1563 26 6 -0.9144 3.1889 -8.0389 27 6 -0.7673 3.8595 -6.8254 28 6 -0.2870 3.2217 -5.7245 29 6 0.0688 1.8615 -5.8049 30 7 0.5387 1.2112 -4.7408 31 1 -0.3634 0.5128 0.8906 32 1 -0.3633 0.5148 -0.8893 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6053 -1.7213 1.2985 35 1 1.7637 -0.1596 2.1403 36 1 6.7052 -2.5121 2.0337 37 1 5.1895 -1.3159 0.0103 38 1 3.8413 -2.4774 -0.0908 39 1 3.9334 -1.1902 -2.1667 40 1 3.9159 0.3386 -1.2548 41 1 1.2781 0.8833 -2.4078 42 1 1.0319 -1.8325 -6.0318 43 1 0.1676 -0.7228 -8.0509 44 1 -0.7012 1.3662 -9.1020 45 1 -1.2981 3.7198 -8.8976 46 1 -1.0386 4.9027 -6.7586 47 1 -0.1797 3.7559 -4.7920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944307606.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:54 Heat of formation + Delta-G solvation = 17.491652 kcal Electronic energy + Delta-G solvation = -28764.276689 eV Core-core repulsion = 24911.267413 eV Total energy + Delta-G solvation = -3853.009276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.08626 -40.93719 -39.29654 -37.82240 -36.27244 -34.73724 -34.11035 -32.98001 -32.10126 -31.35809 -30.86955 -27.44975 -27.28863 -25.92706 -24.71753 -23.79798 -23.08150 -22.67316 -21.80250 -21.07016 -19.30596 -18.90714 -18.62634 -18.17058 -17.21234 -16.77276 -16.41854 -16.35715 -15.72570 -15.63233 -15.49204 -15.37390 -15.20599 -14.97294 -14.70587 -14.54565 -14.39536 -14.14738 -14.03059 -13.63116 -13.08259 -13.04281 -12.76527 -12.70385 -12.64925 -12.61229 -12.45406 -12.31159 -12.10391 -12.03556 -11.71742 -11.64827 -11.60103 -11.46071 -11.21674 -10.63044 -10.58731 -10.11657 -9.80879 -9.27168 -8.73223 -7.88326 -5.34090 -0.85917 -0.35077 0.92097 1.37596 1.46224 1.47949 1.58855 1.97253 2.21278 2.50721 2.92687 3.08061 3.27212 3.55503 3.60387 3.67656 3.72685 3.82405 3.88802 3.99463 4.13000 4.15757 4.25170 4.34168 4.38353 4.51087 4.57449 4.68140 4.70827 4.77238 4.82771 4.85439 4.92251 4.97839 5.03420 5.07117 5.09426 5.11715 5.26077 5.35565 5.38028 5.44239 5.46904 5.48513 5.49878 5.62491 5.67796 5.86462 6.34672 6.37011 6.67483 7.08572 7.11866 7.82521 8.35597 9.19068 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019761 B = 0.002360 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.571726 B =11859.166624 C =12113.842177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.100 4.100 3 H 0.077 0.923 4 C 0.151 3.849 5 N -0.609 5.609 6 C -0.260 4.260 7 H 0.073 0.927 8 C -0.054 4.054 9 N -0.937 5.937 10 Si 0.969 3.031 11 H -0.263 1.263 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.184 3.816 15 C -0.132 4.132 16 C 0.167 3.833 17 H 0.063 0.937 18 N -0.688 5.688 19 C 0.562 3.438 20 O -0.567 6.567 21 C 0.099 3.901 22 C -0.145 4.145 23 C -0.047 4.047 24 C -0.102 4.102 25 C -0.102 4.102 26 C -0.103 4.103 27 C -0.093 4.093 28 C -0.108 4.108 29 C 0.097 3.903 30 N -0.457 5.457 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.013 0.987 35 H 0.067 0.933 36 H 0.249 0.751 37 H 0.057 0.943 38 H -0.008 1.008 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.415 0.585 42 H 0.148 0.852 43 H 0.184 0.816 44 H 0.163 0.837 45 H 0.163 0.837 46 H 0.160 0.840 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.698 12.867 -23.352 32.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.121 4.121 3 H 0.095 0.905 4 C 0.025 3.975 5 N -0.332 5.332 6 C -0.390 4.390 7 H 0.091 0.909 8 C -0.249 4.249 9 N -0.583 5.583 10 Si 0.797 3.203 11 H -0.187 1.187 12 H -0.220 1.220 13 H -0.219 1.219 14 C 0.057 3.943 15 C -0.173 4.173 16 C 0.063 3.937 17 H 0.081 0.919 18 N -0.338 5.338 19 C 0.348 3.652 20 O -0.445 6.445 21 C -0.053 4.053 22 C -0.166 4.166 23 C -0.073 4.073 24 C -0.104 4.104 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.113 4.113 28 C -0.127 4.127 29 C -0.027 4.027 30 N -0.169 5.169 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.010 0.990 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.253 0.747 42 H 0.166 0.834 43 H 0.201 0.799 44 H 0.181 0.819 45 H 0.181 0.819 46 H 0.178 0.822 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.281 12.477 -22.521 31.008 hybrid contribution 1.107 -0.403 0.230 1.201 sum -16.173 12.075 -22.291 30.071 Atomic orbital electron populations 1.21704 0.92834 1.01935 1.02655 1.21766 0.96816 0.99836 0.93639 0.90471 1.21070 0.83465 0.96891 0.96055 1.44339 1.01131 1.71579 1.16183 1.19582 0.98534 1.12308 1.08580 0.90916 1.25853 1.01892 0.96096 1.01107 1.70217 1.21788 1.16323 1.50009 0.85186 0.78928 0.78455 0.77749 1.18694 1.21956 1.21890 1.20376 0.97721 0.92250 0.83931 1.22270 0.95777 1.00855 0.98362 1.20798 0.92738 0.96434 0.83780 0.91870 1.45925 1.63605 1.15240 1.09052 1.18337 0.77777 0.85745 0.83387 1.90767 1.51820 1.17001 1.84940 1.21152 0.99207 0.90808 0.94167 1.21829 1.00074 1.02401 0.92270 1.21872 0.93078 0.92995 0.99317 1.19314 1.00431 0.95236 0.95374 1.21388 0.97592 0.95346 0.97703 1.21484 0.97435 0.94482 0.98712 1.21365 0.96245 1.01766 0.91877 1.21087 0.99286 0.91261 1.01046 1.19304 0.98795 0.95663 0.88914 1.67725 1.09517 1.08021 1.31646 0.90844 0.91780 0.93244 0.96888 0.91442 0.94146 0.92438 0.98981 0.93322 0.92306 0.74711 0.83375 0.79922 0.81943 0.81899 0.82210 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 9.02 71.98 0.65 -2.89 16 2 C -0.10 -3.38 2.46 -10.72 -0.03 -3.41 16 3 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 4 C 0.15 6.34 5.80 86.36 0.50 6.84 16 5 N -0.61 -31.57 3.00 -699.92 -2.10 -33.67 16 6 C -0.26 -14.50 9.59 84.03 0.81 -13.70 16 7 H 0.07 3.89 7.88 -2.91 -0.02 3.87 16 8 C -0.05 -3.11 4.91 84.86 0.42 -2.69 16 9 N -0.94 -57.38 11.20 21.65 0.24 -57.14 16 10 Si 0.97 45.69 29.59 68.60 2.03 47.72 16 11 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 13 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 14 C 0.18 9.58 5.28 86.22 0.46 10.03 16 15 C -0.13 -5.67 5.64 30.53 0.17 -5.50 16 16 C 0.17 6.17 1.88 45.02 0.08 6.26 16 17 H 0.06 2.63 7.58 -2.39 -0.02 2.62 16 18 N -0.69 -21.87 4.35 -444.89 -1.94 -23.80 16 19 C 0.56 18.94 7.78 86.91 0.68 19.62 16 20 O -0.57 -22.80 15.94 -3.71 -0.06 -22.86 16 21 C 0.10 2.78 6.75 42.30 0.29 3.07 16 22 C -0.14 -3.32 9.54 22.36 0.21 -3.11 16 23 C -0.05 -0.75 9.88 22.48 0.22 -0.53 16 24 C -0.10 -1.72 5.75 -21.22 -0.12 -1.84 16 25 C -0.10 -0.99 9.77 22.31 0.22 -0.77 16 26 C -0.10 -0.77 9.95 22.07 0.22 -0.55 16 27 C -0.09 -0.89 9.94 22.04 0.22 -0.68 16 28 C -0.11 -1.73 9.99 22.38 0.22 -1.51 16 29 C 0.10 2.07 6.61 40.47 0.27 2.34 16 30 N -0.46 -11.85 9.47 -177.77 -1.68 -13.53 16 31 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.06 1.53 7.36 -2.39 -0.02 1.51 16 33 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 36 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 37 H 0.06 3.35 6.04 -2.39 -0.01 3.34 16 38 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 39 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.42 11.57 7.61 -92.70 -0.71 10.86 16 42 H 0.15 3.35 7.60 -2.91 -0.02 3.33 16 43 H 0.18 1.38 8.06 -2.91 -0.02 1.35 16 44 H 0.16 0.55 8.06 -2.91 -0.02 0.52 16 45 H 0.16 0.13 8.06 -2.91 -0.02 0.11 16 46 H 0.16 0.59 8.06 -2.91 -0.02 0.57 16 47 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -74.69 383.00 2.25 -72.44 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.28 Total: 19.86 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 5.48 Total: 10.98 kcal Atomic # 7 Polarization: -122.66 SS G_CDS: -5.48 Total: -128.14 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.06 Total: -22.86 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -74.69 2.25 -72.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944307606.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.930 kcal (2) G-P(sol) polarization free energy of solvation -74.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds