Wall clock time and date at job start Tue Mar 31 2020 22:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.49783 * 2 1 4 4 C 1.53196 * 109.49590 * 239.93798 * 2 1 3 5 5 N 1.46932 * 108.89311 * 185.31186 * 4 2 1 6 6 C 1.36935 * 120.62761 * 233.67612 * 5 4 2 7 7 H 1.07996 * 120.00407 * 28.17575 * 6 5 4 8 8 C 1.38812 * 119.99638 * 208.17262 * 6 5 4 9 9 N 1.31618 * 120.00308 * 16.31043 * 8 6 5 10 10 Si 1.86802 * 120.00009 * 196.30584 * 8 6 5 11 11 H 1.48499 * 109.47086 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46891 * 119.99928 * 10 8 6 13 13 H 1.48494 * 109.47474 * 239.99941 * 10 8 6 14 14 C 1.47201 * 118.55519 * 53.53743 * 5 4 2 15 15 C 1.53198 * 108.85391 * 306.48187 * 14 5 4 16 16 C 1.53030 * 109.31472 * 54.65164 * 15 14 5 17 17 H 1.08997 * 109.46327 * 58.65500 * 16 15 14 18 18 N 1.46497 * 109.45298 * 178.62076 * 16 15 14 19 19 C 1.34775 * 119.99930 * 275.06407 * 18 16 15 20 20 O 1.21599 * 120.00631 * 359.97438 * 19 18 16 21 21 C 1.47457 * 120.00020 * 179.97438 * 19 18 16 22 22 C 1.38859 * 120.45919 * 354.47335 * 21 19 18 23 23 C 1.38896 * 120.67476 * 179.76275 * 22 21 19 24 24 C 1.36372 * 121.27514 * 0.52256 * 23 22 21 25 25 C 1.40398 * 119.98310 * 359.73783 * 24 23 22 26 26 C 1.40465 * 121.95829 * 180.02562 * 25 24 23 27 27 N 1.31283 * 119.88547 * 179.97438 * 26 25 24 28 28 C 1.32548 * 122.73209 * 0.02562 * 27 26 25 29 29 C 1.36336 * 121.82231 * 359.97438 * 28 27 26 30 30 C 1.40288 * 118.69762 * 0.02562 * 29 28 27 31 31 H 1.09001 * 109.46755 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46999 * 300.06471 * 1 2 3 33 33 H 1.09000 * 109.46710 * 60.06346 * 1 2 3 34 34 H 1.08999 * 109.58728 * 305.16541 * 4 2 1 35 35 H 1.09002 * 109.59056 * 65.45454 * 4 2 1 36 36 H 0.96997 * 120.00385 * 180.02562 * 9 8 6 37 37 H 1.08997 * 109.53417 * 186.68073 * 14 5 4 38 38 H 1.09001 * 109.55980 * 66.29751 * 14 5 4 39 39 H 1.09006 * 109.49655 * 294.69811 * 15 14 5 40 40 H 1.08999 * 109.52285 * 174.62344 * 15 14 5 41 41 H 0.97005 * 120.00349 * 95.05553 * 18 16 15 42 42 H 1.08001 * 119.66236 * 0.02562 * 22 21 19 43 43 H 1.08005 * 119.36749 * 180.28222 * 23 22 21 44 44 H 1.08003 * 120.01153 * 179.75929 * 24 23 22 45 45 H 1.08003 * 120.06182 * 359.95567 * 26 25 24 46 46 H 1.08002 * 119.09430 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.65000 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7234 -1.2499 5 7 3.5049 -0.8281 -1.1737 6 6 4.2909 -0.3763 -2.2000 7 1 3.9454 0.4295 -2.8305 8 6 5.5320 -0.9541 -2.4298 9 7 5.8245 -2.1201 -1.8940 10 14 6.7870 -0.0767 -3.4997 11 1 6.2175 1.2086 -3.9779 12 1 8.0134 0.1907 -2.7060 13 1 7.1282 -0.9316 -4.6649 14 6 4.1060 -1.4256 0.0298 15 6 3.5715 -0.6943 1.2653 16 6 2.0415 -0.7230 1.2481 17 1 1.6978 -1.7573 1.2350 18 7 1.5274 -0.0532 2.4452 19 6 1.4000 -0.7385 3.5986 20 8 1.7113 -1.9131 3.6457 21 6 0.8831 -0.0641 4.8038 22 6 0.6327 1.3017 4.7933 23 6 0.1412 1.9406 5.9244 24 6 -0.0997 1.2533 7.0774 25 6 0.1442 -0.1281 7.1347 26 6 -0.0896 -0.8767 8.3001 27 7 0.1523 -2.1670 8.3083 28 6 0.6170 -2.8158 7.2500 29 6 0.8758 -2.1788 6.0727 30 6 0.6415 -0.7982 5.9881 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3633 0.5129 -0.8906 34 1 1.6057 -1.7214 -1.2983 35 1 1.7611 -0.1589 -2.1392 36 1 6.6918 -2.5237 -2.0543 37 1 5.1902 -1.3229 -0.0150 38 1 3.8386 -2.4808 0.0857 39 1 3.9161 0.3398 1.2534 40 1 3.9345 -1.1884 2.1665 41 1 1.2789 0.8838 2.4078 42 1 0.8181 1.8722 3.8952 43 1 -0.0504 3.0030 5.8914 44 1 -0.4784 1.7714 7.9461 45 1 -0.4675 -0.3915 9.1880 46 1 0.7955 -3.8785 7.3222 47 1 1.2546 -2.7261 5.2223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944919278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:00 Heat of formation + Delta-G solvation = 41.242364 kcal Electronic energy + Delta-G solvation = -29118.165223 eV Core-core repulsion = 25266.185855 eV Total energy + Delta-G solvation = -3851.979368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.27086 -39.70190 -37.83723 -37.28545 -34.68138 -33.12529 -32.82685 -31.47722 -31.18695 -30.34694 -29.39326 -25.96456 -25.44664 -24.66479 -23.69654 -23.40844 -22.01686 -21.03500 -20.53191 -19.43870 -18.25985 -17.94136 -16.86592 -16.64388 -16.33493 -15.87388 -15.32349 -15.05892 -14.84834 -14.65658 -14.23483 -14.05113 -13.89451 -13.66421 -13.47445 -13.31810 -12.86001 -12.81406 -12.67889 -12.35461 -12.29532 -12.09907 -11.86853 -11.53152 -11.34736 -11.08511 -10.85191 -10.68086 -10.43055 -10.35981 -10.24038 -10.08733 -9.99519 -9.82862 -9.62745 -9.42372 -9.31619 -8.81940 -8.48252 -8.30793 -6.71161 -5.81095 -3.24754 -0.13902 0.60578 1.46551 2.49159 3.14891 3.18730 3.35433 3.43146 3.45006 3.89260 4.21858 4.29152 4.33276 4.44663 4.46437 4.62256 4.68575 4.80617 5.04605 5.13502 5.26006 5.29362 5.36711 5.41907 5.45298 5.55860 5.60965 5.69490 5.73666 5.84535 5.90275 5.92360 6.05026 6.10962 6.19804 6.22166 6.28470 6.38212 6.40392 6.52793 6.59122 6.63106 6.73808 6.86761 6.91797 7.33576 7.56453 7.65393 7.76699 7.77070 8.25669 8.41907 9.17699 9.80891 10.37927 11.27545 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019965 B = 0.002528 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.089208 B =11071.555647 C =11523.358005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 H 0.071 0.929 4 C 0.155 3.845 5 N -0.593 5.593 6 C -0.254 4.254 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.901 5.901 10 Si 0.902 3.098 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.290 1.290 14 C 0.173 3.827 15 C -0.147 4.147 16 C 0.157 3.843 17 H 0.085 0.915 18 N -0.712 5.712 19 C 0.557 3.443 20 O -0.531 6.531 21 C -0.121 4.121 22 C -0.060 4.060 23 C -0.130 4.130 24 C -0.063 4.063 25 C -0.120 4.120 26 C 0.137 3.863 27 N -0.487 5.487 28 C 0.070 3.930 29 C -0.150 4.150 30 C 0.010 3.990 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.021 0.979 35 H 0.058 0.942 36 H 0.254 0.746 37 H 0.090 0.910 38 H 0.021 0.979 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.394 0.606 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.137 0.863 45 H 0.163 0.837 46 H 0.155 0.845 47 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.053 8.475 17.431 23.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 H 0.089 0.911 4 C 0.027 3.973 5 N -0.315 5.315 6 C -0.383 4.383 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.545 5.545 10 Si 0.732 3.268 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.217 1.217 14 C 0.047 3.953 15 C -0.188 4.188 16 C 0.054 3.946 17 H 0.103 0.897 18 N -0.362 5.362 19 C 0.344 3.656 20 O -0.410 6.410 21 C -0.125 4.125 22 C -0.080 4.080 23 C -0.148 4.148 24 C -0.083 4.083 25 C -0.122 4.122 26 C -0.035 4.035 27 N -0.195 5.195 28 C -0.072 4.072 29 C -0.169 4.169 30 C 0.004 3.996 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.229 0.771 42 H 0.150 0.850 43 H 0.152 0.848 44 H 0.154 0.846 45 H 0.180 0.820 46 H 0.172 0.828 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -13.755 6.901 18.059 23.727 hybrid contribution 0.771 1.461 -1.262 2.079 sum -12.984 8.362 16.798 22.818 Atomic orbital electron populations 1.21778 0.95764 1.01668 1.00824 1.21981 0.94518 1.00609 0.96475 0.91052 1.20889 0.86062 0.96645 0.93669 1.44160 0.99233 1.71508 1.16593 1.19197 0.98631 1.11934 1.08588 0.91601 1.25071 0.99970 0.95368 0.99175 1.70030 1.22039 1.14806 1.47614 0.86235 0.81620 0.79128 0.79841 1.20270 1.21571 1.21688 1.20809 0.99471 0.93120 0.81879 1.22583 0.93685 1.01607 1.00892 1.21133 0.94668 0.96977 0.81845 0.89726 1.46248 1.65298 1.14219 1.10435 1.17995 0.78231 0.86466 0.82919 1.90605 1.50510 1.15831 1.84026 1.20003 1.04126 0.94063 0.94260 1.21519 0.94520 0.93239 0.98744 1.20837 1.00405 1.00709 0.92826 1.21167 0.96282 0.92413 0.98422 1.19031 1.02745 0.95163 0.95299 1.23161 0.94762 0.89575 0.95983 1.67400 1.11311 1.10110 1.30649 1.22375 0.95905 1.00519 0.88433 1.23021 0.98362 0.94228 1.01288 1.17954 0.95704 0.94011 0.91935 0.92821 0.93562 0.92646 0.96157 0.92360 0.93599 0.89196 0.96050 0.92637 0.92696 0.77133 0.85003 0.84829 0.84562 0.82010 0.82786 0.80514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.03 37.16 0.34 -1.47 16 2 C -0.11 -1.81 2.46 -90.50 -0.22 -2.03 16 3 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 4 C 0.15 3.08 5.79 -3.71 -0.02 3.06 16 5 N -0.59 -14.45 3.00 -172.09 -0.52 -14.97 16 6 C -0.25 -6.81 9.59 -15.06 -0.14 -6.96 16 7 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 8 C 0.00 0.08 4.94 -17.43 -0.09 0.00 16 9 N -0.90 -26.04 11.18 55.49 0.62 -25.42 16 10 Si 0.90 21.43 29.58 -169.99 -5.03 16.40 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 C 0.17 4.13 5.32 -3.56 -0.02 4.11 16 15 C -0.15 -2.85 5.65 -26.61 -0.15 -3.00 16 16 C 0.16 2.59 1.88 -67.90 -0.13 2.47 16 17 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 18 N -0.71 -9.49 4.32 -54.84 -0.24 -9.72 16 19 C 0.56 8.11 7.70 -12.51 -0.10 8.01 16 20 O -0.53 -9.42 13.15 5.28 0.07 -9.35 16 21 C -0.12 -1.47 5.90 -104.70 -0.62 -2.09 16 22 C -0.06 -0.53 9.52 -39.11 -0.37 -0.90 16 23 C -0.13 -0.91 9.92 -40.01 -0.40 -1.30 16 24 C -0.06 -0.45 9.79 -39.44 -0.39 -0.84 16 25 C -0.12 -1.22 5.74 -106.88 -0.61 -1.84 16 26 C 0.14 1.32 11.05 -16.95 -0.19 1.14 16 27 N -0.49 -5.79 10.30 -13.11 -0.14 -5.93 16 28 C 0.07 0.85 11.07 -17.93 -0.20 0.65 16 29 C -0.15 -2.00 9.28 -39.50 -0.37 -2.36 16 30 C 0.01 0.12 5.77 -106.55 -0.61 -0.49 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.50 7.37 -51.93 -0.38 0.12 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 36 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.39 4.08 6.38 -40.82 -0.26 3.82 16 42 H 0.13 0.86 6.42 -52.49 -0.34 0.52 16 43 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 44 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 45 H 0.16 0.96 8.06 -52.48 -0.42 0.54 16 46 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 47 H 0.18 2.62 5.05 -52.49 -0.27 2.36 16 LS Contribution 375.44 15.07 5.66 5.66 Total: -1.00 -32.45 375.44 -10.42 -42.87 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.57 Total: 4.31 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -4.29 Total: -3.84 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.27 Total: -56.04 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.07 Total: -9.35 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.45 -10.42 -42.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944919278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.110 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds