Wall clock time and date at job start Tue Mar 31 2020 22:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.49783 * 2 1 4 4 C 1.53196 * 109.49590 * 239.93798 * 2 1 3 5 5 N 1.46932 * 108.89311 * 185.31186 * 4 2 1 6 6 C 1.36935 * 120.62761 * 233.67612 * 5 4 2 7 7 H 1.07996 * 120.00407 * 28.17575 * 6 5 4 8 8 C 1.38812 * 119.99638 * 208.17262 * 6 5 4 9 9 N 1.31618 * 120.00308 * 16.31043 * 8 6 5 10 10 Si 1.86802 * 120.00009 * 196.30584 * 8 6 5 11 11 H 1.48499 * 109.47086 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46891 * 119.99928 * 10 8 6 13 13 H 1.48494 * 109.47474 * 239.99941 * 10 8 6 14 14 C 1.47201 * 118.55519 * 53.53743 * 5 4 2 15 15 C 1.53198 * 108.85391 * 306.48187 * 14 5 4 16 16 C 1.53030 * 109.31472 * 54.65164 * 15 14 5 17 17 H 1.08997 * 109.46327 * 58.65500 * 16 15 14 18 18 N 1.46497 * 109.45298 * 178.62076 * 16 15 14 19 19 C 1.34775 * 119.99930 * 275.06407 * 18 16 15 20 20 O 1.21599 * 120.00631 * 359.97438 * 19 18 16 21 21 C 1.47457 * 120.00020 * 179.97438 * 19 18 16 22 22 C 1.38859 * 120.45919 * 354.47335 * 21 19 18 23 23 C 1.38896 * 120.67476 * 179.76275 * 22 21 19 24 24 C 1.36372 * 121.27514 * 0.52256 * 23 22 21 25 25 C 1.40398 * 119.98310 * 359.73783 * 24 23 22 26 26 C 1.40465 * 121.95829 * 180.02562 * 25 24 23 27 27 N 1.31283 * 119.88547 * 179.97438 * 26 25 24 28 28 C 1.32548 * 122.73209 * 0.02562 * 27 26 25 29 29 C 1.36336 * 121.82231 * 359.97438 * 28 27 26 30 30 C 1.40288 * 118.69762 * 0.02562 * 29 28 27 31 31 H 1.09001 * 109.46755 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46999 * 300.06471 * 1 2 3 33 33 H 1.09000 * 109.46710 * 60.06346 * 1 2 3 34 34 H 1.08999 * 109.58728 * 305.16541 * 4 2 1 35 35 H 1.09002 * 109.59056 * 65.45454 * 4 2 1 36 36 H 0.96997 * 120.00385 * 180.02562 * 9 8 6 37 37 H 1.08997 * 109.53417 * 186.68073 * 14 5 4 38 38 H 1.09001 * 109.55980 * 66.29751 * 14 5 4 39 39 H 1.09006 * 109.49655 * 294.69811 * 15 14 5 40 40 H 1.08999 * 109.52285 * 174.62344 * 15 14 5 41 41 H 0.97005 * 120.00349 * 95.05553 * 18 16 15 42 42 H 1.08001 * 119.66236 * 0.02562 * 22 21 19 43 43 H 1.08005 * 119.36749 * 180.28222 * 23 22 21 44 44 H 1.08003 * 120.01153 * 179.75929 * 24 23 22 45 45 H 1.08003 * 120.06182 * 359.95567 * 26 25 24 46 46 H 1.08002 * 119.09430 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.65000 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7234 -1.2499 5 7 3.5049 -0.8281 -1.1737 6 6 4.2909 -0.3763 -2.2000 7 1 3.9454 0.4295 -2.8305 8 6 5.5320 -0.9541 -2.4298 9 7 5.8245 -2.1201 -1.8940 10 14 6.7870 -0.0767 -3.4997 11 1 6.2175 1.2086 -3.9779 12 1 8.0134 0.1907 -2.7060 13 1 7.1282 -0.9316 -4.6649 14 6 4.1060 -1.4256 0.0298 15 6 3.5715 -0.6943 1.2653 16 6 2.0415 -0.7230 1.2481 17 1 1.6978 -1.7573 1.2350 18 7 1.5274 -0.0532 2.4452 19 6 1.4000 -0.7385 3.5986 20 8 1.7113 -1.9131 3.6457 21 6 0.8831 -0.0641 4.8038 22 6 0.6327 1.3017 4.7933 23 6 0.1412 1.9406 5.9244 24 6 -0.0997 1.2533 7.0774 25 6 0.1442 -0.1281 7.1347 26 6 -0.0896 -0.8767 8.3001 27 7 0.1523 -2.1670 8.3083 28 6 0.6170 -2.8158 7.2500 29 6 0.8758 -2.1788 6.0727 30 6 0.6415 -0.7982 5.9881 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3633 0.5129 -0.8906 34 1 1.6057 -1.7214 -1.2983 35 1 1.7611 -0.1589 -2.1392 36 1 6.6918 -2.5237 -2.0543 37 1 5.1902 -1.3229 -0.0150 38 1 3.8386 -2.4808 0.0857 39 1 3.9161 0.3398 1.2534 40 1 3.9345 -1.1884 2.1665 41 1 1.2789 0.8838 2.4078 42 1 0.8181 1.8722 3.8952 43 1 -0.0504 3.0030 5.8914 44 1 -0.4784 1.7714 7.9461 45 1 -0.4675 -0.3915 9.1880 46 1 0.7955 -3.8785 7.3222 47 1 1.2546 -2.7261 5.2223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944919278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:59 Heat of formation + Delta-G solvation = 21.331336 kcal Electronic energy + Delta-G solvation = -29119.028630 eV Core-core repulsion = 25266.185855 eV Total energy + Delta-G solvation = -3852.842775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.11431 -40.85242 -39.21908 -38.11948 -36.27804 -34.36274 -33.86413 -32.95009 -32.36155 -31.61784 -30.51677 -27.43041 -27.04402 -25.58893 -24.68384 -24.35619 -23.39585 -22.66638 -21.68738 -20.87354 -19.07270 -18.95537 -18.56731 -17.62285 -17.21257 -17.08336 -16.73957 -16.17653 -16.14697 -15.67185 -15.60849 -15.33120 -15.12296 -14.78533 -14.75921 -14.54582 -14.36890 -14.16580 -13.61184 -13.53822 -13.11351 -13.05033 -12.98999 -12.90674 -12.74668 -12.70662 -12.60725 -12.28988 -12.08731 -12.03486 -11.67593 -11.60033 -11.29281 -11.17428 -10.94111 -10.60226 -10.32881 -10.17083 -10.05330 -9.10743 -8.72706 -7.88822 -5.35856 -0.87845 -0.13194 0.62564 1.46051 1.47682 1.58469 1.72058 2.04326 2.24690 2.50073 3.09547 3.27203 3.49134 3.50091 3.62190 3.64057 3.73786 3.78999 3.91306 3.94738 4.00916 4.13452 4.21348 4.35403 4.40514 4.54725 4.58460 4.68727 4.71180 4.73921 4.81548 4.85291 4.89751 4.94802 4.99825 5.07884 5.11029 5.12521 5.27343 5.27999 5.36696 5.37502 5.49283 5.51060 5.62285 5.67387 5.69144 5.79252 6.36524 6.51058 6.95873 7.11058 7.19828 7.81581 8.35379 9.18478 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019965 B = 0.002528 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.089208 B =11071.555647 C =11523.358005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 H 0.084 0.916 4 C 0.149 3.851 5 N -0.609 5.609 6 C -0.259 4.259 7 H 0.075 0.925 8 C -0.055 4.055 9 N -0.939 5.939 10 Si 0.969 3.031 11 H -0.261 1.261 12 H -0.293 1.293 13 H -0.294 1.294 14 C 0.183 3.817 15 C -0.131 4.131 16 C 0.170 3.830 17 H 0.056 0.944 18 N -0.698 5.698 19 C 0.553 3.447 20 O -0.575 6.575 21 C -0.161 4.161 22 C -0.037 4.037 23 C -0.131 4.131 24 C -0.041 4.041 25 C -0.137 4.137 26 C 0.150 3.850 27 N -0.515 5.515 28 C 0.067 3.933 29 C -0.185 4.185 30 C -0.008 4.008 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.008 0.992 35 H 0.067 0.933 36 H 0.249 0.751 37 H 0.055 0.945 38 H -0.013 1.013 39 H 0.064 0.936 40 H 0.044 0.956 41 H 0.413 0.587 42 H 0.158 0.842 43 H 0.176 0.824 44 H 0.182 0.818 45 H 0.206 0.794 46 H 0.161 0.839 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.464 13.375 19.114 28.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.120 4.120 3 H 0.102 0.898 4 C 0.023 3.977 5 N -0.332 5.332 6 C -0.389 4.389 7 H 0.093 0.907 8 C -0.250 4.250 9 N -0.585 5.585 10 Si 0.797 3.203 11 H -0.185 1.185 12 H -0.219 1.219 13 H -0.221 1.221 14 C 0.057 3.943 15 C -0.171 4.171 16 C 0.066 3.934 17 H 0.074 0.926 18 N -0.349 5.349 19 C 0.343 3.657 20 O -0.457 6.457 21 C -0.164 4.164 22 C -0.057 4.057 23 C -0.148 4.148 24 C -0.061 4.061 25 C -0.139 4.139 26 C -0.022 4.022 27 N -0.223 5.223 28 C -0.075 4.075 29 C -0.204 4.204 30 C -0.014 4.014 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.026 0.974 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.006 0.994 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.251 0.749 42 H 0.175 0.825 43 H 0.194 0.806 44 H 0.199 0.801 45 H 0.222 0.778 46 H 0.178 0.822 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.215 11.851 19.745 28.164 hybrid contribution 1.437 -0.005 -1.700 2.226 sum -14.778 11.846 18.045 26.160 Atomic orbital electron populations 1.21723 0.92714 1.01795 1.02992 1.21765 0.96834 1.00018 0.93334 0.89785 1.21089 0.83495 0.96740 0.96399 1.44400 1.01119 1.71434 1.16263 1.19593 0.99007 1.11674 1.08614 0.90747 1.25892 1.02023 0.96038 1.01053 1.70208 1.22146 1.16548 1.49646 0.85178 0.78876 0.78456 0.77764 1.18464 1.21948 1.22133 1.20497 0.97649 0.92026 0.84148 1.22318 0.95996 1.00933 0.97900 1.20687 0.92483 0.96302 0.83961 0.92573 1.45880 1.65069 1.14916 1.09068 1.18531 0.77334 0.86053 0.83785 1.90609 1.52313 1.17979 1.84767 1.19769 1.07995 0.95613 0.93013 1.21938 0.91650 0.91610 1.00522 1.21331 0.99166 1.02634 0.91671 1.21716 0.93546 0.90746 1.00067 1.19328 1.03224 0.96856 0.94453 1.23928 0.92282 0.88847 0.97107 1.67474 1.12955 1.11551 1.30328 1.22476 0.95605 1.01049 0.88340 1.22820 1.01053 0.95450 1.01072 1.18203 0.96107 0.93752 0.93359 0.93801 0.90908 0.90922 0.97444 0.91491 0.94210 0.92627 0.99448 0.91771 0.93720 0.74897 0.82486 0.80629 0.80112 0.77786 0.82179 0.83278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.03 71.98 0.65 -2.40 16 2 C -0.10 -2.99 2.46 -10.71 -0.03 -3.01 16 3 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 4 C 0.15 5.96 5.79 86.36 0.50 6.46 16 5 N -0.61 -30.57 3.00 -698.36 -2.10 -32.67 16 6 C -0.26 -14.07 9.59 84.03 0.81 -13.26 16 7 H 0.07 3.85 7.88 -2.91 -0.02 3.83 16 8 C -0.06 -3.09 4.94 84.86 0.42 -2.68 16 9 N -0.94 -56.97 11.18 21.65 0.24 -56.73 16 10 Si 0.97 44.83 29.58 68.60 2.03 46.86 16 11 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 12 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 13 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 14 C 0.18 9.30 5.32 86.31 0.46 9.76 16 15 C -0.13 -5.28 5.65 30.67 0.17 -5.11 16 16 C 0.17 5.72 1.88 45.02 0.08 5.81 16 17 H 0.06 2.24 7.58 -2.39 -0.02 2.22 16 18 N -0.70 -17.97 4.32 -445.68 -1.92 -19.90 16 19 C 0.55 16.50 7.70 86.67 0.67 17.17 16 20 O -0.57 -22.24 13.15 -4.03 -0.05 -22.29 16 21 C -0.16 -3.74 5.90 -19.92 -0.12 -3.86 16 22 C -0.04 -0.51 9.52 22.58 0.21 -0.29 16 23 C -0.13 -1.06 9.92 21.99 0.22 -0.84 16 24 C -0.04 -0.37 9.79 22.36 0.22 -0.15 16 25 C -0.14 -2.40 5.74 -21.33 -0.12 -2.53 16 26 C 0.15 2.50 11.05 85.32 0.94 3.45 16 27 N -0.51 -12.01 10.30 -195.39 -2.01 -14.02 16 28 C 0.07 1.73 11.07 84.14 0.93 2.66 16 29 C -0.18 -5.35 9.28 22.32 0.21 -5.15 16 30 C -0.01 -0.21 5.77 -21.11 -0.12 -0.33 16 31 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.30 7.37 -2.39 -0.02 1.28 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.07 2.54 7.93 -2.39 -0.02 2.52 16 36 H 0.25 14.63 8.31 -92.71 -0.77 13.85 16 37 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 38 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 39 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 40 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.41 7.29 6.38 -92.70 -0.59 6.70 16 42 H 0.16 1.23 6.42 -2.91 -0.02 1.21 16 43 H 0.18 0.07 8.06 -2.91 -0.02 0.04 16 44 H 0.18 0.03 8.06 -2.91 -0.02 0.01 16 45 H 0.21 1.44 8.06 -2.91 -0.02 1.42 16 46 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 47 H 0.15 5.10 5.05 -2.91 -0.01 5.09 16 Total: -1.00 -78.49 375.44 2.69 -75.80 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.40 Total: 17.23 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 6.10 Total: 5.70 kcal Atomic # 7 Polarization: -117.51 SS G_CDS: -5.79 Total: -123.30 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.05 Total: -22.29 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -78.49 2.69 -75.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944919278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.132 kcal (2) G-P(sol) polarization free energy of solvation -78.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds