Wall clock time and date at job start Tue Mar 31 2020 22:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.52289 * 2 1 4 4 C 1.53195 * 109.49998 * 239.91589 * 2 1 3 5 5 N 1.46925 * 108.77265 * 185.41407 * 4 2 1 6 6 C 1.36940 * 120.62737 * 233.62737 * 5 4 2 7 7 H 1.08004 * 120.00064 * 28.38213 * 6 5 4 8 8 C 1.38811 * 120.00059 * 208.37514 * 6 5 4 9 9 N 1.31619 * 120.00201 * 16.49898 * 8 6 5 10 10 Si 1.86800 * 120.00122 * 196.50197 * 8 6 5 11 11 H 1.48502 * 109.47170 * 89.99836 * 10 8 6 12 12 H 1.48492 * 109.47397 * 210.00089 * 10 8 6 13 13 H 1.48506 * 109.47075 * 329.99884 * 10 8 6 14 14 C 1.46919 * 118.74240 * 53.61096 * 5 4 2 15 15 C 1.53194 * 108.77628 * 306.38839 * 14 5 4 16 16 C 1.53040 * 109.30822 * 54.63428 * 15 14 5 17 17 H 1.09001 * 109.45755 * 178.63078 * 16 15 14 18 18 N 1.46501 * 109.46113 * 58.66065 * 16 15 14 19 19 C 1.34773 * 120.00275 * 84.72469 * 18 16 15 20 20 O 1.21595 * 119.99799 * 0.26971 * 19 18 16 21 21 C 1.47453 * 119.99651 * 180.27804 * 19 18 16 22 22 C 1.38855 * 120.46413 * 354.41848 * 21 19 18 23 23 C 1.38899 * 120.67813 * 180.02562 * 22 21 19 24 24 C 1.36372 * 121.27259 * 0.02562 * 23 22 21 25 25 C 1.40396 * 119.98526 * 359.97438 * 24 23 22 26 26 C 1.40467 * 121.94915 * 179.97438 * 25 24 23 27 27 N 1.31275 * 119.88112 * 180.02562 * 26 25 24 28 28 C 1.32556 * 122.73329 * 0.02562 * 27 26 25 29 29 C 1.36333 * 121.81946 * 359.97438 * 28 27 26 30 30 C 1.40293 * 118.70258 * 359.77339 * 29 28 27 31 31 H 1.08990 * 109.47018 * 299.91910 * 1 2 3 32 32 H 1.08996 * 109.46932 * 59.92134 * 1 2 3 33 33 H 1.09003 * 109.46825 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.58380 * 65.62754 * 4 2 1 35 35 H 1.09001 * 109.58546 * 305.20176 * 4 2 1 36 36 H 0.96998 * 119.99913 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.58869 * 186.60229 * 14 5 4 38 38 H 1.09000 * 109.58743 * 66.17886 * 14 5 4 39 39 H 1.08999 * 109.49363 * 294.68296 * 15 14 5 40 40 H 1.08999 * 109.49803 * 174.58305 * 15 14 5 41 41 H 0.97006 * 119.99109 * 264.99441 * 18 16 15 42 42 H 1.08004 * 119.66147 * 0.03515 * 22 21 19 43 43 H 1.08003 * 119.36431 * 179.97438 * 23 22 21 44 44 H 1.07998 * 120.00640 * 180.02562 * 24 23 22 45 45 H 1.07997 * 120.05596 * 0.02562 * 26 25 24 46 46 H 1.07998 * 119.08664 * 180.02562 * 28 27 26 47 47 H 1.08001 * 120.64305 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7239 -1.2495 5 7 3.5047 -0.8291 -1.1694 6 6 4.2937 -0.3786 -2.1940 7 1 3.9515 0.4292 -2.8240 8 6 5.5333 -0.9599 -2.4227 9 7 5.8200 -2.1292 -1.8909 10 14 6.7946 -0.0825 -3.4851 11 1 7.6390 0.7913 -2.6314 12 1 7.6514 -1.0857 -4.1667 13 1 6.0962 0.7445 -4.5018 14 6 4.1053 -1.4266 0.0309 15 6 3.5709 -0.6949 1.2661 16 6 2.0408 -0.7231 1.2484 17 1 1.6581 -0.2242 2.1388 18 7 1.5784 -2.1131 1.2309 19 6 1.4542 -2.7965 2.3859 20 8 1.7213 -2.2579 3.4428 21 6 0.9946 -4.1975 2.3677 22 6 0.5773 -4.7861 1.1813 23 6 0.1431 -6.1053 1.1591 24 6 0.1123 -6.8596 2.2948 25 6 0.5251 -6.3052 3.5168 26 6 0.5099 -7.0443 4.7112 27 7 0.9045 -6.4851 5.8314 28 6 1.3260 -5.2300 5.8963 29 6 1.3779 -4.4311 4.7928 30 6 0.9767 -4.9616 3.5575 31 1 -0.3633 0.5125 0.8906 32 1 -0.3633 0.5150 -0.8893 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7639 -0.1580 -2.1389 35 1 1.6053 -1.7217 -1.2979 36 1 6.6861 -2.5356 -2.0510 37 1 5.1897 -1.3245 -0.0136 38 1 3.8377 -2.4818 0.0869 39 1 3.9159 0.3389 1.2541 40 1 3.9334 -1.1896 2.1672 41 1 1.3654 -2.5427 0.3877 42 1 0.5908 -4.2124 0.2663 43 1 -0.1772 -6.5418 0.2246 44 1 -0.2288 -7.8835 2.2540 45 1 0.1742 -8.0708 4.7079 46 1 1.6377 -4.8294 6.8497 47 1 1.7250 -3.4112 4.8674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944919279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:04 Heat of formation + Delta-G solvation = 43.001496 kcal Electronic energy + Delta-G solvation = -29740.542748 eV Core-core repulsion = 25888.639661 eV Total energy + Delta-G solvation = -3851.903087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.15621 -39.74376 -37.83473 -37.17198 -34.38731 -33.00289 -32.73216 -31.41070 -31.08092 -30.34430 -29.40277 -25.98102 -25.41617 -24.67255 -23.62077 -23.38014 -22.03332 -21.20990 -20.62300 -18.80402 -18.17535 -17.87758 -16.83213 -16.52596 -16.31039 -15.41627 -15.27528 -15.00190 -14.85663 -14.50910 -14.19983 -14.08144 -13.83244 -13.73486 -13.48056 -13.30111 -12.97944 -12.73406 -12.58322 -12.26919 -12.15697 -12.04590 -11.74690 -11.54674 -11.42594 -11.11582 -10.86522 -10.75698 -10.39133 -10.27965 -10.25451 -10.10921 -9.90266 -9.80549 -9.49071 -9.27700 -9.25218 -8.73974 -8.51889 -8.18570 -6.73910 -5.84780 -3.29042 -0.00018 0.74655 1.58704 2.63269 3.24924 3.34058 3.36703 3.41404 3.42026 4.02118 4.32132 4.42888 4.44396 4.49338 4.60018 4.75472 4.82750 4.95240 5.09381 5.25025 5.25645 5.30795 5.41549 5.44191 5.55366 5.56241 5.73566 5.81047 5.83492 5.85534 5.91601 6.02060 6.06718 6.09558 6.20575 6.23562 6.29285 6.38358 6.50043 6.58054 6.60035 6.64307 6.71842 6.82313 6.92786 7.30855 7.61291 7.71237 7.74094 7.86827 8.37465 8.38411 9.14481 9.77339 10.33240 11.23103 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015097 B = 0.003071 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.166726 B = 9115.058612 C = 9502.679728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 H 0.083 0.917 4 C 0.152 3.848 5 N -0.591 5.591 6 C -0.256 4.256 7 H 0.066 0.934 8 C 0.005 3.995 9 N -0.901 5.901 10 Si 0.903 3.097 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.174 3.826 15 C -0.155 4.155 16 C 0.160 3.840 17 H 0.076 0.924 18 N -0.701 5.701 19 C 0.560 3.440 20 O -0.541 6.541 21 C -0.122 4.122 22 C -0.055 4.055 23 C -0.127 4.127 24 C -0.064 4.064 25 C -0.120 4.120 26 C 0.137 3.863 27 N -0.489 5.489 28 C 0.068 3.932 29 C -0.149 4.149 30 C 0.011 3.989 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.011 0.989 36 H 0.254 0.746 37 H 0.086 0.914 38 H 0.018 0.982 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.400 0.600 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.162 0.838 46 H 0.153 0.847 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.685 -6.930 8.081 17.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 H 0.102 0.898 4 C 0.025 3.975 5 N -0.313 5.313 6 C -0.385 4.385 7 H 0.083 0.917 8 C -0.194 4.194 9 N -0.545 5.545 10 Si 0.733 3.267 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.204 1.204 14 C 0.048 3.952 15 C -0.195 4.195 16 C 0.056 3.944 17 H 0.094 0.906 18 N -0.351 5.351 19 C 0.348 3.652 20 O -0.421 6.421 21 C -0.125 4.125 22 C -0.075 4.075 23 C -0.145 4.145 24 C -0.084 4.084 25 C -0.123 4.123 26 C -0.034 4.034 27 N -0.197 5.197 28 C -0.075 4.075 29 C -0.168 4.168 30 C 0.005 3.995 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.029 0.971 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.036 0.964 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.237 0.763 42 H 0.151 0.849 43 H 0.153 0.847 44 H 0.154 0.846 45 H 0.179 0.821 46 H 0.170 0.830 47 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -13.271 -6.961 9.614 17.805 hybrid contribution 0.709 0.587 -1.842 2.059 sum -12.562 -6.374 7.772 16.088 Atomic orbital electron populations 1.21768 0.95721 1.01283 1.01215 1.21969 0.94579 1.00856 0.96650 0.89835 1.20907 0.86168 0.95959 0.94439 1.44061 0.99090 1.71552 1.16614 1.19172 0.98718 1.11841 1.08800 0.91661 1.25053 0.99912 0.95307 0.99144 1.70023 1.22226 1.14500 1.47725 0.86291 0.81626 0.78829 0.79995 1.21412 1.21771 1.20431 1.20725 0.99349 0.92880 0.82206 1.22578 0.94054 1.02049 1.00812 1.20954 0.95211 0.80080 0.98125 0.90643 1.46062 1.66229 1.14417 1.08439 1.17946 0.77737 0.85268 0.84292 1.90554 1.51736 1.69743 1.30102 1.19952 1.04296 0.94625 0.93641 1.21565 0.93703 0.95263 0.97017 1.20859 1.00642 0.93928 0.99051 1.21156 0.96131 0.99854 0.91270 1.19022 1.02716 0.94472 0.96042 1.23138 0.94436 0.99252 0.86608 1.67382 1.10141 1.12927 1.29213 1.22331 0.96969 0.89145 0.99056 1.22984 0.98197 1.04013 0.91637 1.17937 0.95751 0.92336 0.93465 0.93212 0.92645 0.93182 0.92386 0.97123 0.93599 0.89568 0.96439 0.91648 0.92629 0.76252 0.84925 0.84744 0.84580 0.82057 0.82958 0.80636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.05 37.16 0.34 -1.44 16 2 C -0.12 -1.87 2.67 -90.50 -0.24 -2.11 16 3 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 4 C 0.15 2.84 5.50 -3.71 -0.02 2.82 16 5 N -0.59 -13.80 2.99 -172.32 -0.52 -14.31 16 6 C -0.26 -6.70 9.58 -15.06 -0.14 -6.85 16 7 H 0.07 1.69 7.88 -52.48 -0.41 1.27 16 8 C 0.00 0.13 4.93 -17.43 -0.09 0.04 16 9 N -0.90 -25.42 11.19 55.49 0.62 -24.80 16 10 Si 0.90 21.21 29.58 -169.99 -5.03 16.18 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 C 0.17 4.00 5.04 -3.71 -0.02 3.98 16 15 C -0.15 -2.98 5.77 -26.61 -0.15 -3.13 16 16 C 0.16 2.63 2.21 -67.89 -0.15 2.48 16 17 H 0.08 1.25 7.58 -51.93 -0.39 0.86 16 18 N -0.70 -10.72 3.55 -54.83 -0.19 -10.91 16 19 C 0.56 8.92 7.69 -12.51 -0.10 8.83 16 20 O -0.54 -9.74 13.16 5.28 0.07 -9.68 16 21 C -0.12 -1.71 5.90 -104.70 -0.62 -2.33 16 22 C -0.06 -0.63 9.52 -39.11 -0.37 -1.00 16 23 C -0.13 -1.18 9.92 -40.01 -0.40 -1.57 16 24 C -0.06 -0.58 9.78 -39.44 -0.39 -0.96 16 25 C -0.12 -1.40 5.74 -106.88 -0.61 -2.02 16 26 C 0.14 1.49 11.05 -16.95 -0.19 1.30 16 27 N -0.49 -6.27 10.30 -13.11 -0.14 -6.41 16 28 C 0.07 0.87 11.07 -17.93 -0.20 0.67 16 29 C -0.15 -2.12 9.28 -39.50 -0.37 -2.49 16 30 C 0.01 0.15 5.77 -106.55 -0.61 -0.46 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.59 7.54 -51.93 -0.39 0.20 16 34 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 35 H 0.01 0.20 6.64 -51.93 -0.34 -0.15 16 36 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.09 2.28 6.06 -51.93 -0.31 1.97 16 38 H 0.02 0.42 7.74 -51.93 -0.40 0.02 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.40 5.75 4.80 -40.82 -0.20 5.56 16 42 H 0.13 1.33 6.42 -52.48 -0.34 1.00 16 43 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 44 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 46 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 47 H 0.18 2.71 5.06 -52.49 -0.27 2.44 16 LS Contribution 371.47 15.07 5.60 5.60 Total: -1.00 -31.18 371.47 -10.32 -41.50 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.41 Total: 7.07 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -4.33 Total: -4.24 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -0.22 Total: -56.43 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.07 Total: -9.68 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.18 -10.32 -41.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944919279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.504 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds