Wall clock time and date at job start Tue Mar 31 2020 22:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.52289 * 2 1 4 4 C 1.53195 * 109.49998 * 239.91589 * 2 1 3 5 5 N 1.46925 * 108.77265 * 185.41407 * 4 2 1 6 6 C 1.36940 * 120.62737 * 233.62737 * 5 4 2 7 7 H 1.08004 * 120.00064 * 28.38213 * 6 5 4 8 8 C 1.38811 * 120.00059 * 208.37514 * 6 5 4 9 9 N 1.31619 * 120.00201 * 16.49898 * 8 6 5 10 10 Si 1.86800 * 120.00122 * 196.50197 * 8 6 5 11 11 H 1.48502 * 109.47170 * 89.99836 * 10 8 6 12 12 H 1.48492 * 109.47397 * 210.00089 * 10 8 6 13 13 H 1.48506 * 109.47075 * 329.99884 * 10 8 6 14 14 C 1.46919 * 118.74240 * 53.61096 * 5 4 2 15 15 C 1.53194 * 108.77628 * 306.38839 * 14 5 4 16 16 C 1.53040 * 109.30822 * 54.63428 * 15 14 5 17 17 H 1.09001 * 109.45755 * 178.63078 * 16 15 14 18 18 N 1.46501 * 109.46113 * 58.66065 * 16 15 14 19 19 C 1.34773 * 120.00275 * 84.72469 * 18 16 15 20 20 O 1.21595 * 119.99799 * 0.26971 * 19 18 16 21 21 C 1.47453 * 119.99651 * 180.27804 * 19 18 16 22 22 C 1.38855 * 120.46413 * 354.41848 * 21 19 18 23 23 C 1.38899 * 120.67813 * 180.02562 * 22 21 19 24 24 C 1.36372 * 121.27259 * 0.02562 * 23 22 21 25 25 C 1.40396 * 119.98526 * 359.97438 * 24 23 22 26 26 C 1.40467 * 121.94915 * 179.97438 * 25 24 23 27 27 N 1.31275 * 119.88112 * 180.02562 * 26 25 24 28 28 C 1.32556 * 122.73329 * 0.02562 * 27 26 25 29 29 C 1.36333 * 121.81946 * 359.97438 * 28 27 26 30 30 C 1.40293 * 118.70258 * 359.77339 * 29 28 27 31 31 H 1.08990 * 109.47018 * 299.91910 * 1 2 3 32 32 H 1.08996 * 109.46932 * 59.92134 * 1 2 3 33 33 H 1.09003 * 109.46825 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.58380 * 65.62754 * 4 2 1 35 35 H 1.09001 * 109.58546 * 305.20176 * 4 2 1 36 36 H 0.96998 * 119.99913 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.58869 * 186.60229 * 14 5 4 38 38 H 1.09000 * 109.58743 * 66.17886 * 14 5 4 39 39 H 1.08999 * 109.49363 * 294.68296 * 15 14 5 40 40 H 1.08999 * 109.49803 * 174.58305 * 15 14 5 41 41 H 0.97006 * 119.99109 * 264.99441 * 18 16 15 42 42 H 1.08004 * 119.66147 * 0.03515 * 22 21 19 43 43 H 1.08003 * 119.36431 * 179.97438 * 23 22 21 44 44 H 1.07998 * 120.00640 * 180.02562 * 24 23 22 45 45 H 1.07997 * 120.05596 * 0.02562 * 26 25 24 46 46 H 1.07998 * 119.08664 * 180.02562 * 28 27 26 47 47 H 1.08001 * 120.64305 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7239 -1.2495 5 7 3.5047 -0.8291 -1.1694 6 6 4.2937 -0.3786 -2.1940 7 1 3.9515 0.4292 -2.8240 8 6 5.5333 -0.9599 -2.4227 9 7 5.8200 -2.1292 -1.8909 10 14 6.7946 -0.0825 -3.4851 11 1 7.6390 0.7913 -2.6314 12 1 7.6514 -1.0857 -4.1667 13 1 6.0962 0.7445 -4.5018 14 6 4.1053 -1.4266 0.0309 15 6 3.5709 -0.6949 1.2661 16 6 2.0408 -0.7231 1.2484 17 1 1.6581 -0.2242 2.1388 18 7 1.5784 -2.1131 1.2309 19 6 1.4542 -2.7965 2.3859 20 8 1.7213 -2.2579 3.4428 21 6 0.9946 -4.1975 2.3677 22 6 0.5773 -4.7861 1.1813 23 6 0.1431 -6.1053 1.1591 24 6 0.1123 -6.8596 2.2948 25 6 0.5251 -6.3052 3.5168 26 6 0.5099 -7.0443 4.7112 27 7 0.9045 -6.4851 5.8314 28 6 1.3260 -5.2300 5.8963 29 6 1.3779 -4.4311 4.7928 30 6 0.9767 -4.9616 3.5575 31 1 -0.3633 0.5125 0.8906 32 1 -0.3633 0.5150 -0.8893 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7639 -0.1580 -2.1389 35 1 1.6053 -1.7217 -1.2979 36 1 6.6861 -2.5356 -2.0510 37 1 5.1897 -1.3245 -0.0136 38 1 3.8377 -2.4818 0.0869 39 1 3.9159 0.3389 1.2541 40 1 3.9334 -1.1896 2.1672 41 1 1.3654 -2.5427 0.3877 42 1 0.5908 -4.2124 0.2663 43 1 -0.1772 -6.5418 0.2246 44 1 -0.2288 -7.8835 2.2540 45 1 0.1742 -8.0708 4.7079 46 1 1.6377 -4.8294 6.8497 47 1 1.7250 -3.4112 4.8674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944919279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:03 Heat of formation + Delta-G solvation = 25.418555 kcal Electronic energy + Delta-G solvation = -29741.305201 eV Core-core repulsion = 25888.639661 eV Total energy + Delta-G solvation = -3852.665540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.13107 -40.97086 -39.19039 -38.11622 -36.05657 -34.18236 -33.84951 -32.91450 -32.36456 -31.67343 -30.50692 -27.40941 -27.11390 -25.64001 -24.67128 -24.34977 -23.58173 -22.77682 -21.76137 -20.22290 -19.18556 -18.92865 -18.54314 -17.51295 -17.29151 -16.87558 -16.59687 -16.38199 -16.09091 -15.69647 -15.52035 -15.45699 -15.11168 -14.80437 -14.77677 -14.55729 -14.40030 -14.13029 -13.59084 -13.50964 -13.17444 -13.05184 -12.96888 -12.93651 -12.71688 -12.66510 -12.55301 -12.36538 -12.17694 -11.96505 -11.68335 -11.50359 -11.17440 -11.12778 -10.96092 -10.54434 -10.30453 -10.17918 -10.05327 -9.10042 -8.66994 -7.87417 -5.33289 -0.88100 -0.13803 0.63314 1.46013 1.48642 1.56066 1.71265 2.10136 2.27747 2.50559 3.09918 3.27992 3.50314 3.50965 3.62600 3.66627 3.77128 3.79633 3.91205 3.94263 4.05498 4.10968 4.19673 4.38122 4.40359 4.53472 4.60162 4.63154 4.72385 4.75300 4.79320 4.86121 4.94450 4.96819 5.00667 5.06753 5.08952 5.18122 5.26723 5.29801 5.36389 5.41245 5.49065 5.55609 5.64360 5.68723 5.72192 5.78598 6.38339 6.49645 6.96156 7.14172 7.17023 7.85442 8.36665 9.18128 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015097 B = 0.003071 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.166726 B = 9115.058612 C = 9502.679728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 H 0.078 0.922 4 C 0.150 3.850 5 N -0.606 5.606 6 C -0.259 4.259 7 H 0.069 0.931 8 C -0.048 4.048 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.290 1.290 12 H -0.297 1.297 13 H -0.266 1.266 14 C 0.189 3.811 15 C -0.144 4.144 16 C 0.168 3.832 17 H 0.078 0.922 18 N -0.697 5.697 19 C 0.557 3.443 20 O -0.571 6.571 21 C -0.161 4.161 22 C -0.044 4.044 23 C -0.133 4.133 24 C -0.040 4.040 25 C -0.137 4.137 26 C 0.151 3.849 27 N -0.513 5.513 28 C 0.069 3.931 29 C -0.181 4.181 30 C -0.007 4.007 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.023 0.977 36 H 0.248 0.752 37 H 0.045 0.955 38 H 0.000 1.000 39 H 0.062 0.938 40 H 0.045 0.955 41 H 0.405 0.595 42 H 0.143 0.857 43 H 0.171 0.829 44 H 0.183 0.817 45 H 0.206 0.794 46 H 0.166 0.834 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.227 -8.517 7.009 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 H 0.097 0.903 4 C 0.024 3.976 5 N -0.329 5.329 6 C -0.390 4.390 7 H 0.087 0.913 8 C -0.244 4.244 9 N -0.579 5.579 10 Si 0.791 3.209 11 H -0.218 1.218 12 H -0.224 1.224 13 H -0.191 1.191 14 C 0.063 3.937 15 C -0.184 4.184 16 C 0.063 3.937 17 H 0.096 0.904 18 N -0.348 5.348 19 C 0.346 3.654 20 O -0.453 6.453 21 C -0.164 4.164 22 C -0.064 4.064 23 C -0.151 4.151 24 C -0.060 4.060 25 C -0.140 4.140 26 C -0.020 4.020 27 N -0.221 5.221 28 C -0.073 4.073 29 C -0.201 4.201 30 C -0.013 4.013 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.018 0.982 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.243 0.757 42 H 0.161 0.839 43 H 0.188 0.812 44 H 0.200 0.800 45 H 0.222 0.778 46 H 0.183 0.817 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.852 -8.529 8.533 19.921 hybrid contribution 1.436 0.978 -1.516 2.306 sum -14.417 -7.551 7.017 17.723 Atomic orbital electron populations 1.21698 0.92677 1.02287 1.02466 1.21815 0.96925 0.99755 0.94227 0.90318 1.21092 0.83361 0.97017 0.96095 1.44252 1.01099 1.71515 1.16076 1.19504 0.99225 1.11482 1.08758 0.91304 1.25750 1.01736 0.95990 1.00919 1.70171 1.22171 1.15963 1.49556 0.85338 0.79300 0.77601 0.78632 1.21762 1.22367 1.19057 1.20376 0.97048 0.92416 0.83846 1.22404 0.96511 1.01045 0.98432 1.20793 0.92843 0.81177 0.98879 0.90363 1.45948 1.66242 1.13905 1.08666 1.18375 0.77022 0.86224 0.83778 1.90545 1.53037 1.70649 1.31075 1.19826 1.07770 0.93756 0.95033 1.21862 0.91849 0.96477 0.96238 1.21283 1.00161 0.92837 1.00822 1.21691 0.93109 1.01572 0.89629 1.19339 1.03289 0.93553 0.97772 1.23890 0.91902 1.00611 0.85619 1.67478 1.11635 1.12683 1.30322 1.22524 0.96234 0.89355 0.99198 1.22822 1.00755 1.03569 0.92906 1.18194 0.96097 0.93817 0.93210 0.92251 0.91119 0.92330 0.92067 0.95879 0.94328 0.93632 0.98191 0.91901 0.93632 0.75686 0.83949 0.81174 0.79973 0.77779 0.81705 0.82852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.05 71.98 0.65 -2.35 16 2 C -0.11 -3.19 2.67 -10.71 -0.03 -3.22 16 3 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 4 C 0.15 5.43 5.50 86.36 0.48 5.91 16 5 N -0.61 -28.62 2.99 -699.09 -2.09 -30.71 16 6 C -0.26 -13.69 9.58 84.03 0.81 -12.88 16 7 H 0.07 3.52 7.88 -2.91 -0.02 3.50 16 8 C -0.05 -2.64 4.93 84.86 0.42 -2.22 16 9 N -0.93 -54.31 11.19 21.65 0.24 -54.07 16 10 Si 0.96 44.23 29.58 68.60 2.03 46.26 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 13 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 14 C 0.19 9.03 5.04 86.36 0.44 9.47 16 15 C -0.14 -5.74 5.77 30.67 0.18 -5.57 16 16 C 0.17 5.53 2.21 45.02 0.10 5.63 16 17 H 0.08 2.60 7.58 -2.39 -0.02 2.58 16 18 N -0.70 -21.43 3.55 -445.65 -1.58 -23.01 16 19 C 0.56 18.35 7.69 86.67 0.67 19.02 16 20 O -0.57 -21.84 13.16 -4.01 -0.05 -21.89 16 21 C -0.16 -4.53 5.90 -19.92 -0.12 -4.65 16 22 C -0.04 -0.93 9.52 22.58 0.21 -0.71 16 23 C -0.13 -1.96 9.92 21.99 0.22 -1.74 16 24 C -0.04 -0.55 9.78 22.36 0.22 -0.33 16 25 C -0.14 -2.89 5.74 -21.33 -0.12 -3.02 16 26 C 0.15 2.87 11.05 85.32 0.94 3.81 16 27 N -0.51 -12.61 10.30 -195.40 -2.01 -14.62 16 28 C 0.07 1.81 11.07 84.14 0.93 2.74 16 29 C -0.18 -5.47 9.28 22.33 0.21 -5.26 16 30 C -0.01 -0.21 5.77 -21.11 -0.12 -0.33 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.23 7.54 -2.39 -0.02 1.21 16 34 H 0.06 2.18 7.93 -2.39 -0.02 2.16 16 35 H 0.02 0.80 6.64 -2.39 -0.02 0.78 16 36 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 37 H 0.05 2.54 6.06 -2.38 -0.01 2.53 16 38 H 0.00 0.00 7.74 -2.39 -0.02 -0.02 16 39 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.41 11.42 4.80 -92.70 -0.44 10.98 16 42 H 0.14 2.59 6.42 -2.91 -0.02 2.58 16 43 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 44 H 0.18 0.81 8.06 -2.91 -0.02 0.78 16 45 H 0.21 1.91 8.06 -2.91 -0.02 1.89 16 46 H 0.17 3.60 8.06 -2.91 -0.02 3.58 16 47 H 0.15 5.24 5.06 -2.91 -0.01 5.23 16 Total: -1.00 -71.67 371.47 3.16 -68.51 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.55 Total: 25.24 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 6.07 Total: 4.30 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -5.44 Total: -122.42 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.05 Total: -21.89 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -71.67 3.16 -68.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944919279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.927 kcal (2) G-P(sol) polarization free energy of solvation -71.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds