Wall clock time and date at job start Tue Mar 31 2020 22:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.52934 * 2 1 4 4 C 1.53189 * 109.49723 * 120.08361 * 2 1 3 5 5 N 1.46928 * 108.77665 * 174.58198 * 4 2 1 6 6 C 1.36945 * 120.63105 * 126.36827 * 5 4 2 7 7 H 1.07998 * 119.99463 * 331.92856 * 6 5 4 8 8 C 1.38807 * 120.00254 * 151.93238 * 6 5 4 9 9 N 1.31619 * 120.00240 * 160.60488 * 8 6 5 10 10 Si 1.86803 * 119.99729 * 340.60056 * 8 6 5 11 11 H 1.48497 * 109.47396 * 95.15639 * 10 8 6 12 12 H 1.48495 * 109.47037 * 215.15724 * 10 8 6 13 13 H 1.48509 * 109.47254 * 335.15175 * 10 8 6 14 14 C 1.46928 * 118.74262 * 306.39591 * 5 4 2 15 15 C 1.53193 * 108.77527 * 53.60457 * 14 5 4 16 16 C 1.53044 * 109.31312 * 305.36793 * 15 14 5 17 17 H 1.09005 * 109.46127 * 301.36081 * 16 15 14 18 18 N 1.46492 * 109.46158 * 181.38844 * 16 15 14 19 19 C 1.34773 * 120.00426 * 84.99861 * 18 16 15 20 20 O 1.21605 * 119.99669 * 0.02562 * 19 18 16 21 21 C 1.47451 * 120.00553 * 179.97438 * 19 18 16 22 22 C 1.38860 * 120.45812 * 354.56531 * 21 19 18 23 23 C 1.38899 * 120.67693 * 180.02562 * 22 21 19 24 24 C 1.36365 * 121.27338 * 359.95949 * 23 22 21 25 25 C 1.40401 * 119.98569 * 0.03930 * 24 23 22 26 26 C 1.40466 * 121.95479 * 180.02562 * 25 24 23 27 27 N 1.31285 * 119.88199 * 179.97438 * 26 25 24 28 28 C 1.32556 * 122.73308 * 0.02562 * 27 26 25 29 29 C 1.36334 * 121.81860 * 0.02562 * 28 27 26 30 30 C 1.40285 * 118.70177 * 359.97438 * 29 28 27 31 31 H 1.08997 * 109.47388 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46835 * 300.08211 * 1 2 3 33 33 H 1.09005 * 109.47072 * 60.07413 * 1 2 3 34 34 H 1.09000 * 109.58864 * 54.79894 * 4 2 1 35 35 H 1.08998 * 109.59118 * 294.37033 * 4 2 1 36 36 H 0.96998 * 119.99577 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.58041 * 293.81698 * 14 5 4 38 38 H 1.08993 * 109.58560 * 173.39289 * 14 5 4 39 39 H 1.09001 * 109.49412 * 185.42092 * 15 14 5 40 40 H 1.08996 * 109.50107 * 65.31772 * 15 14 5 41 41 H 0.97000 * 119.99757 * 265.00010 * 18 16 15 42 42 H 1.08005 * 119.66054 * 0.02562 * 22 21 19 43 43 H 1.08006 * 119.36383 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.01078 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.05846 * 359.95153 * 26 25 24 46 46 H 1.07998 * 119.08773 * 179.97438 * 28 27 26 47 47 H 1.08001 * 120.64397 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7238 1.2495 5 7 3.5045 -0.8293 1.1695 6 6 4.2936 -0.3787 2.1940 7 1 3.9494 0.4258 2.8270 8 6 5.5359 -0.9558 2.4189 9 7 6.4439 -0.3110 3.1203 10 14 5.9188 -2.6478 1.7259 11 1 6.6199 -2.5029 0.4249 12 1 6.7875 -3.3870 2.6767 13 1 4.6533 -3.3986 1.5254 14 6 4.1053 -1.4268 -0.0309 15 6 3.5708 -0.6950 -1.2661 16 6 2.0408 -0.7230 -1.2484 17 1 1.6966 -1.7572 -1.2352 18 7 1.5265 -0.0529 -2.4453 19 6 1.3971 -0.7384 -3.5984 20 8 1.7069 -1.9135 -3.6452 21 6 0.8790 -0.0641 -4.8030 22 6 0.4163 1.2433 -4.7337 23 6 -0.0733 1.8827 -5.8654 24 6 -0.1142 1.2512 -7.0734 25 6 0.3434 -0.0711 -7.1897 26 6 0.3208 -0.7606 -8.4133 27 7 0.7593 -1.9965 -8.4758 28 6 1.2330 -2.6432 -7.4202 29 6 1.2955 -2.0610 -6.1890 30 6 0.8444 -0.7406 -6.0444 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5151 0.8893 33 1 -0.3633 0.5127 -0.8907 34 1 1.6052 -1.7217 1.2979 35 1 1.7638 -0.1580 2.1389 36 1 7.3121 -0.7142 3.2770 37 1 3.8375 -2.4819 -0.0868 38 1 5.1895 -1.3247 0.0137 39 1 3.9334 -1.1898 -2.1672 40 1 3.9159 0.3388 -1.2542 41 1 1.2791 0.8843 -2.4079 42 1 0.4373 1.7684 -3.7901 43 1 -0.4282 2.8998 -5.7873 44 1 -0.4993 1.7676 -7.9401 45 1 -0.0570 -0.2751 -9.3009 46 1 1.5783 -3.6597 -7.5385 47 1 1.6855 -2.6056 -5.3417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944919280.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:08 Heat of formation + Delta-G solvation = 47.056194 kcal Electronic energy + Delta-G solvation = -29239.527966 eV Core-core repulsion = 25387.800705 eV Total energy + Delta-G solvation = -3851.727262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.34157 -39.84234 -38.06897 -37.38360 -34.89438 -33.19323 -32.89113 -31.70437 -31.47104 -30.55732 -29.59022 -26.46880 -25.51905 -24.68861 -23.73585 -23.39312 -22.08491 -21.44967 -20.67061 -19.71434 -18.33252 -18.02525 -16.93292 -16.72924 -16.41885 -16.08778 -15.46105 -15.15966 -15.05589 -14.67298 -14.45809 -14.30359 -14.05102 -13.69003 -13.51517 -13.48408 -13.20244 -12.91561 -12.77483 -12.38718 -12.37135 -12.13756 -12.00153 -11.90092 -11.70453 -11.61249 -11.07585 -10.66175 -10.60619 -10.44106 -10.20180 -10.11775 -10.04764 -9.86051 -9.52305 -9.47803 -9.42446 -8.95744 -8.65235 -8.37950 -7.01618 -5.97411 -3.35263 -0.20100 0.55091 1.40227 2.42319 3.01625 3.11041 3.33005 3.48859 3.51681 3.83196 4.16572 4.22552 4.27048 4.38372 4.51377 4.56327 4.61933 4.74694 4.86316 4.92189 5.06935 5.20027 5.22994 5.26301 5.35887 5.39452 5.55030 5.63260 5.65430 5.66567 5.78385 5.82012 5.84780 5.96545 6.03374 6.03871 6.07610 6.18552 6.29530 6.32237 6.37095 6.48062 6.54390 6.59234 6.64853 6.67853 6.87532 7.44443 7.71431 7.92845 8.13702 8.29712 8.90088 9.68837 10.05831 11.18329 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018047 B = 0.002804 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.121883 B = 9981.617053 C =10850.010869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 H 0.076 0.924 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.262 4.262 7 H 0.086 0.914 8 C 0.025 3.975 9 N -0.909 5.909 10 Si 0.882 3.118 11 H -0.289 1.289 12 H -0.303 1.303 13 H -0.268 1.268 14 C 0.129 3.871 15 C -0.142 4.142 16 C 0.156 3.844 17 H 0.086 0.914 18 N -0.712 5.712 19 C 0.558 3.442 20 O -0.532 6.532 21 C -0.123 4.123 22 C -0.058 4.058 23 C -0.130 4.130 24 C -0.061 4.061 25 C -0.121 4.121 26 C 0.138 3.862 27 N -0.487 5.487 28 C 0.071 3.929 29 C -0.151 4.151 30 C 0.011 3.989 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.026 0.974 35 H 0.068 0.932 36 H 0.263 0.737 37 H 0.029 0.971 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.396 0.604 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.163 0.837 46 H 0.155 0.845 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.201 4.850 -20.288 26.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 H 0.095 0.905 4 C 0.031 3.969 5 N -0.330 5.330 6 C -0.390 4.390 7 H 0.104 0.896 8 C -0.175 4.175 9 N -0.552 5.552 10 Si 0.712 3.288 11 H -0.216 1.216 12 H -0.231 1.231 13 H -0.193 1.193 14 C 0.003 3.997 15 C -0.182 4.182 16 C 0.053 3.947 17 H 0.104 0.896 18 N -0.362 5.362 19 C 0.346 3.654 20 O -0.411 6.411 21 C -0.127 4.127 22 C -0.078 4.078 23 C -0.148 4.148 24 C -0.081 4.081 25 C -0.123 4.123 26 C -0.034 4.034 27 N -0.195 5.195 28 C -0.071 4.071 29 C -0.170 4.170 30 C 0.005 3.995 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.231 0.769 42 H 0.150 0.850 43 H 0.152 0.848 44 H 0.155 0.845 45 H 0.180 0.820 46 H 0.172 0.828 47 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -15.747 3.422 -20.896 26.388 hybrid contribution 0.302 0.110 0.428 0.536 sum -15.445 3.532 -20.468 25.884 Atomic orbital electron populations 1.21773 0.95397 1.01762 1.01113 1.21981 0.94863 1.00927 0.95971 0.90525 1.20919 0.84407 0.97058 0.94480 1.44395 1.00731 1.71860 1.15977 1.18903 0.98310 1.13502 1.08283 0.89647 1.25286 0.96529 0.98024 0.97615 1.69820 1.04963 1.37341 1.43036 0.86954 0.77930 0.86746 0.77125 1.21645 1.23113 1.19288 1.21321 0.98067 0.94831 0.85473 1.22419 0.94302 1.02058 0.99460 1.21085 0.94082 0.97228 0.82296 0.89578 1.46182 1.65384 1.14313 1.10319 1.18007 0.78102 0.86426 0.82886 1.90604 1.50751 1.15854 1.83895 1.19956 1.04116 0.95019 0.93561 1.21524 0.94075 0.93041 0.99202 1.20843 1.00809 1.00788 0.92379 1.21181 0.95823 0.92792 0.98316 1.19036 1.02448 0.95865 0.94933 1.23176 0.94408 0.90164 0.95614 1.67408 1.09569 1.09435 1.33062 1.22377 0.96470 1.00143 0.88143 1.22997 0.98423 0.94755 1.00852 1.17943 0.95676 0.94169 0.91740 0.92776 0.92372 0.93414 0.95637 0.91324 0.92735 0.95302 0.90820 0.92237 0.91565 0.76884 0.84971 0.84757 0.84505 0.81958 0.82797 0.80594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.03 37.16 0.34 -1.31 16 2 C -0.12 -1.70 2.46 -90.50 -0.22 -1.93 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.16 2.93 5.80 -3.71 -0.02 2.91 16 5 N -0.61 -13.98 2.76 -172.32 -0.48 -14.46 16 6 C -0.26 -7.16 10.04 -15.06 -0.15 -7.31 16 7 H 0.09 2.48 8.06 -52.49 -0.42 2.05 16 8 C 0.02 0.70 5.25 -17.43 -0.09 0.61 16 9 N -0.91 -27.67 13.97 55.49 0.78 -26.89 16 10 Si 0.88 22.48 24.35 -169.99 -4.14 18.34 16 11 H -0.29 -7.19 6.73 56.52 0.38 -6.81 16 12 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 13 H -0.27 -6.71 6.40 56.52 0.36 -6.34 16 14 C 0.13 2.82 4.18 -3.71 -0.02 2.81 16 15 C -0.14 -2.55 5.65 -26.61 -0.15 -2.70 16 16 C 0.16 2.39 1.88 -67.89 -0.13 2.26 16 17 H 0.09 1.47 7.57 -51.93 -0.39 1.07 16 18 N -0.71 -8.76 4.31 -54.83 -0.24 -9.00 16 19 C 0.56 7.61 7.70 -12.51 -0.10 7.51 16 20 O -0.53 -8.87 13.15 5.27 0.07 -8.81 16 21 C -0.12 -1.41 5.90 -104.70 -0.62 -2.02 16 22 C -0.06 -0.47 9.52 -39.11 -0.37 -0.84 16 23 C -0.13 -0.84 9.92 -40.01 -0.40 -1.24 16 24 C -0.06 -0.41 9.79 -39.44 -0.39 -0.80 16 25 C -0.12 -1.17 5.74 -106.88 -0.61 -1.78 16 26 C 0.14 1.28 11.05 -16.95 -0.19 1.09 16 27 N -0.49 -5.61 10.30 -13.11 -0.14 -5.74 16 28 C 0.07 0.83 11.07 -17.93 -0.20 0.63 16 29 C -0.15 -1.93 9.28 -39.50 -0.37 -2.29 16 30 C 0.01 0.13 5.77 -106.55 -0.61 -0.49 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.47 7.36 -51.93 -0.38 0.08 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.03 0.64 6.93 -51.93 -0.36 0.28 16 38 H 0.07 1.77 4.56 -51.93 -0.24 1.54 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.40 3.74 6.38 -40.82 -0.26 3.48 16 42 H 0.13 0.76 6.42 -52.48 -0.34 0.42 16 43 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 44 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 45 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 46 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 47 H 0.18 2.49 5.06 -52.49 -0.27 2.23 16 LS Contribution 368.76 15.07 5.56 5.56 Total: -1.00 -33.62 368.76 -9.37 -42.99 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.49 Total: 2.91 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -4.29 Total: -4.90 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.07 Total: -56.09 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.07 Total: -8.81 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.14 Total: 18.34 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.62 -9.37 -42.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944919280.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.046 kcal (2) G-P(sol) polarization free energy of solvation -33.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds