Wall clock time and date at job start Tue Mar 31 2020 22:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.52934 * 2 1 4 4 C 1.53189 * 109.49723 * 120.08361 * 2 1 3 5 5 N 1.46928 * 108.77665 * 174.58198 * 4 2 1 6 6 C 1.36945 * 120.63105 * 126.36827 * 5 4 2 7 7 H 1.07998 * 119.99463 * 331.92856 * 6 5 4 8 8 C 1.38807 * 120.00254 * 151.93238 * 6 5 4 9 9 N 1.31619 * 120.00240 * 160.60488 * 8 6 5 10 10 Si 1.86803 * 119.99729 * 340.60056 * 8 6 5 11 11 H 1.48497 * 109.47396 * 95.15639 * 10 8 6 12 12 H 1.48495 * 109.47037 * 215.15724 * 10 8 6 13 13 H 1.48509 * 109.47254 * 335.15175 * 10 8 6 14 14 C 1.46928 * 118.74262 * 306.39591 * 5 4 2 15 15 C 1.53193 * 108.77527 * 53.60457 * 14 5 4 16 16 C 1.53044 * 109.31312 * 305.36793 * 15 14 5 17 17 H 1.09005 * 109.46127 * 301.36081 * 16 15 14 18 18 N 1.46492 * 109.46158 * 181.38844 * 16 15 14 19 19 C 1.34773 * 120.00426 * 84.99861 * 18 16 15 20 20 O 1.21605 * 119.99669 * 0.02562 * 19 18 16 21 21 C 1.47451 * 120.00553 * 179.97438 * 19 18 16 22 22 C 1.38860 * 120.45812 * 354.56531 * 21 19 18 23 23 C 1.38899 * 120.67693 * 180.02562 * 22 21 19 24 24 C 1.36365 * 121.27338 * 359.95949 * 23 22 21 25 25 C 1.40401 * 119.98569 * 0.03930 * 24 23 22 26 26 C 1.40466 * 121.95479 * 180.02562 * 25 24 23 27 27 N 1.31285 * 119.88199 * 179.97438 * 26 25 24 28 28 C 1.32556 * 122.73308 * 0.02562 * 27 26 25 29 29 C 1.36334 * 121.81860 * 0.02562 * 28 27 26 30 30 C 1.40285 * 118.70177 * 359.97438 * 29 28 27 31 31 H 1.08997 * 109.47388 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46835 * 300.08211 * 1 2 3 33 33 H 1.09005 * 109.47072 * 60.07413 * 1 2 3 34 34 H 1.09000 * 109.58864 * 54.79894 * 4 2 1 35 35 H 1.08998 * 109.59118 * 294.37033 * 4 2 1 36 36 H 0.96998 * 119.99577 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.58041 * 293.81698 * 14 5 4 38 38 H 1.08993 * 109.58560 * 173.39289 * 14 5 4 39 39 H 1.09001 * 109.49412 * 185.42092 * 15 14 5 40 40 H 1.08996 * 109.50107 * 65.31772 * 15 14 5 41 41 H 0.97000 * 119.99757 * 265.00010 * 18 16 15 42 42 H 1.08005 * 119.66054 * 0.02562 * 22 21 19 43 43 H 1.08006 * 119.36383 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.01078 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.05846 * 359.95153 * 26 25 24 46 46 H 1.07998 * 119.08773 * 179.97438 * 28 27 26 47 47 H 1.08001 * 120.64397 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7238 1.2495 5 7 3.5045 -0.8293 1.1695 6 6 4.2936 -0.3787 2.1940 7 1 3.9494 0.4258 2.8270 8 6 5.5359 -0.9558 2.4189 9 7 6.4439 -0.3110 3.1203 10 14 5.9188 -2.6478 1.7259 11 1 6.6199 -2.5029 0.4249 12 1 6.7875 -3.3870 2.6767 13 1 4.6533 -3.3986 1.5254 14 6 4.1053 -1.4268 -0.0309 15 6 3.5708 -0.6950 -1.2661 16 6 2.0408 -0.7230 -1.2484 17 1 1.6966 -1.7572 -1.2352 18 7 1.5265 -0.0529 -2.4453 19 6 1.3971 -0.7384 -3.5984 20 8 1.7069 -1.9135 -3.6452 21 6 0.8790 -0.0641 -4.8030 22 6 0.4163 1.2433 -4.7337 23 6 -0.0733 1.8827 -5.8654 24 6 -0.1142 1.2512 -7.0734 25 6 0.3434 -0.0711 -7.1897 26 6 0.3208 -0.7606 -8.4133 27 7 0.7593 -1.9965 -8.4758 28 6 1.2330 -2.6432 -7.4202 29 6 1.2955 -2.0610 -6.1890 30 6 0.8444 -0.7406 -6.0444 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5151 0.8893 33 1 -0.3633 0.5127 -0.8907 34 1 1.6052 -1.7217 1.2979 35 1 1.7638 -0.1580 2.1389 36 1 7.3121 -0.7142 3.2770 37 1 3.8375 -2.4819 -0.0868 38 1 5.1895 -1.3247 0.0137 39 1 3.9334 -1.1898 -2.1672 40 1 3.9159 0.3388 -1.2542 41 1 1.2791 0.8843 -2.4079 42 1 0.4373 1.7684 -3.7901 43 1 -0.4282 2.8998 -5.7873 44 1 -0.4993 1.7676 -7.9401 45 1 -0.0570 -0.2751 -9.3009 46 1 1.5783 -3.6597 -7.5385 47 1 1.6855 -2.6056 -5.3417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944919280.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:07 Heat of formation + Delta-G solvation = 25.008099 kcal Electronic energy + Delta-G solvation = -29240.484043 eV Core-core repulsion = 25387.800705 eV Total energy + Delta-G solvation = -3852.683339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.12827 -40.91676 -39.38728 -38.13189 -36.39195 -34.39208 -33.87895 -33.40180 -32.47677 -31.74353 -30.56800 -27.84228 -26.98692 -25.56364 -24.60723 -24.35440 -23.39724 -23.07283 -21.72783 -20.99734 -19.08755 -18.98434 -18.65381 -17.74889 -17.33355 -17.22601 -16.75997 -16.28648 -16.13665 -16.07723 -15.55197 -15.31039 -15.13123 -14.86746 -14.82153 -14.79566 -14.41751 -14.26635 -13.81789 -13.61550 -13.54358 -13.34301 -13.05367 -12.92894 -12.84141 -12.71133 -12.68238 -12.23527 -12.13413 -11.93171 -11.75992 -11.51065 -11.34939 -11.18598 -10.99553 -10.77725 -10.32156 -10.19688 -10.08979 -9.11515 -8.97641 -8.19565 -5.52107 -0.88728 -0.13786 0.61654 1.26470 1.37372 1.45269 1.70538 2.01101 2.24050 2.37727 3.01926 3.08834 3.28950 3.49242 3.49554 3.61581 3.68406 3.77914 3.87786 3.90756 3.94024 4.06993 4.18383 4.21132 4.37694 4.39643 4.50560 4.57374 4.59848 4.71904 4.72566 4.78306 4.83738 4.88099 4.88890 4.93823 5.04892 5.08299 5.10095 5.15699 5.26478 5.29949 5.36252 5.43986 5.51895 5.67777 5.78332 5.84439 6.10916 6.48481 6.87542 6.95333 7.16753 7.58297 7.99902 9.00009 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018047 B = 0.002804 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.121883 B = 9981.617053 C =10850.010869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.102 4.102 3 H 0.080 0.920 4 C 0.150 3.850 5 N -0.619 5.619 6 C -0.243 4.243 7 H 0.062 0.938 8 C -0.030 4.030 9 N -0.954 5.954 10 Si 0.937 3.063 11 H -0.283 1.283 12 H -0.309 1.309 13 H -0.263 1.263 14 C 0.127 3.873 15 C -0.132 4.132 16 C 0.168 3.832 17 H 0.069 0.931 18 N -0.699 5.699 19 C 0.556 3.444 20 O -0.572 6.572 21 C -0.161 4.161 22 C -0.037 4.037 23 C -0.131 4.131 24 C -0.042 4.042 25 C -0.137 4.137 26 C 0.149 3.851 27 N -0.515 5.515 28 C 0.067 3.933 29 C -0.183 4.183 30 C -0.008 4.008 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.261 0.739 37 H 0.026 0.974 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.413 0.587 42 H 0.159 0.841 43 H 0.175 0.825 44 H 0.180 0.820 45 H 0.204 0.796 46 H 0.161 0.839 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.323 7.499 -23.017 30.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.123 4.123 3 H 0.099 0.901 4 C 0.025 3.975 5 N -0.343 5.343 6 C -0.373 4.373 7 H 0.080 0.920 8 C -0.225 4.225 9 N -0.601 5.601 10 Si 0.767 3.233 11 H -0.211 1.211 12 H -0.238 1.238 13 H -0.187 1.187 14 C 0.001 3.999 15 C -0.172 4.172 16 C 0.063 3.937 17 H 0.087 0.913 18 N -0.350 5.350 19 C 0.346 3.654 20 O -0.454 6.454 21 C -0.164 4.164 22 C -0.057 4.057 23 C -0.149 4.149 24 C -0.061 4.061 25 C -0.139 4.139 26 C -0.022 4.022 27 N -0.224 5.224 28 C -0.075 4.075 29 C -0.203 4.203 30 C -0.014 4.014 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.251 0.749 42 H 0.176 0.824 43 H 0.193 0.807 44 H 0.197 0.803 45 H 0.221 0.779 46 H 0.178 0.822 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.924 6.087 -23.655 30.899 hybrid contribution 1.152 -0.570 1.195 1.755 sum -17.772 5.518 -22.460 29.167 Atomic orbital electron populations 1.21723 0.92357 1.02164 1.03026 1.21782 0.97178 1.00061 0.93271 0.90131 1.21160 0.81635 0.97911 0.96758 1.44522 1.02468 1.71883 1.15411 1.18902 0.98266 1.11981 1.08112 0.91996 1.25825 0.96911 1.00842 0.98956 1.69927 1.05541 1.38783 1.45804 0.86058 0.77720 0.83087 0.76468 1.21062 1.23808 1.18719 1.21262 0.96784 0.95124 0.86742 1.22248 0.96517 1.01228 0.97187 1.20724 0.92037 0.96957 0.83980 0.91327 1.45860 1.65112 1.14954 1.09080 1.18467 0.77293 0.86042 0.83639 1.90603 1.52459 1.17786 1.84549 1.19765 1.07708 0.96710 0.92242 1.21944 0.91196 0.91367 1.01182 1.21330 0.99817 1.02363 0.91372 1.21707 0.93240 0.91109 1.00093 1.19328 1.03041 0.97396 0.94156 1.23913 0.92107 0.89319 0.96886 1.67474 1.11256 1.10875 1.32779 1.22490 0.96341 1.00633 0.88076 1.22820 1.00863 0.96021 1.00556 1.18197 0.96010 0.94013 0.93160 0.93175 0.91101 0.90877 0.95180 0.91269 0.92965 0.95658 0.93302 0.92517 0.91517 0.74869 0.82401 0.80739 0.80263 0.77926 0.82166 0.83052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.03 71.98 0.65 -2.03 16 2 C -0.10 -2.79 2.46 -10.72 -0.03 -2.82 16 3 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 4 C 0.15 5.45 5.80 86.36 0.50 5.95 16 5 N -0.62 -28.67 2.76 -699.10 -1.93 -30.61 16 6 C -0.24 -13.56 10.04 84.03 0.84 -12.72 16 7 H 0.06 3.70 8.06 -2.91 -0.02 3.67 16 8 C -0.03 -1.78 5.25 84.86 0.45 -1.34 16 9 N -0.95 -59.96 13.97 21.65 0.30 -59.66 16 10 Si 0.94 47.90 24.35 68.60 1.67 49.57 16 11 H -0.28 -14.07 6.73 99.48 0.67 -13.40 16 12 H -0.31 -15.99 7.11 99.48 0.71 -15.28 16 13 H -0.26 -13.00 6.40 99.48 0.64 -12.37 16 14 C 0.13 5.59 4.18 86.36 0.36 5.95 16 15 C -0.13 -4.72 5.65 30.67 0.17 -4.55 16 16 C 0.17 4.96 1.88 45.02 0.08 5.05 16 17 H 0.07 2.33 7.57 -2.38 -0.02 2.31 16 18 N -0.70 -15.98 4.31 -445.65 -1.92 -17.90 16 19 C 0.56 14.96 7.70 86.67 0.67 15.62 16 20 O -0.57 -20.00 13.15 -4.05 -0.05 -20.05 16 21 C -0.16 -3.44 5.90 -19.92 -0.12 -3.55 16 22 C -0.04 -0.45 9.52 22.58 0.21 -0.23 16 23 C -0.13 -0.95 9.92 21.99 0.22 -0.73 16 24 C -0.04 -0.34 9.79 22.36 0.22 -0.12 16 25 C -0.14 -2.28 5.74 -21.33 -0.12 -2.40 16 26 C 0.15 2.37 11.05 85.32 0.94 3.31 16 27 N -0.52 -11.52 10.30 -195.39 -2.01 -13.53 16 28 C 0.07 1.62 11.07 84.14 0.93 2.55 16 29 C -0.18 -4.97 9.28 22.32 0.21 -4.77 16 30 C -0.01 -0.19 5.77 -21.12 -0.12 -0.31 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.11 7.36 -2.38 -0.02 1.09 16 34 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 2.48 7.93 -2.39 -0.02 2.46 16 36 H 0.26 15.69 8.31 -92.71 -0.77 14.91 16 37 H 0.03 1.14 6.93 -2.39 -0.02 1.12 16 38 H 0.05 2.39 4.56 -2.39 -0.01 2.38 16 39 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.41 6.42 6.38 -92.71 -0.59 5.83 16 42 H 0.16 0.99 6.42 -2.91 -0.02 0.97 16 43 H 0.18 -0.04 8.06 -2.91 -0.02 -0.07 16 44 H 0.18 -0.05 8.06 -2.91 -0.02 -0.07 16 45 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 46 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 47 H 0.15 4.80 5.06 -2.91 -0.01 4.78 16 Total: -1.00 -78.85 368.76 2.42 -76.43 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.30 Total: 12.86 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 6.07 Total: 2.88 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -5.56 Total: -121.69 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.05 Total: -20.05 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 1.67 Total: 49.57 kcal Total: -78.85 2.42 -76.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944919280.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.438 kcal (2) G-P(sol) polarization free energy of solvation -78.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds