Wall clock time and date at job start Tue Mar 31 2020 22:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70277 * 2 1 4 4 C 1.52760 * 109.43451 * 120.16709 * 2 1 3 5 5 C 1.53034 * 109.38235 * 65.41926 * 4 2 1 6 6 H 1.09005 * 109.45529 * 301.22915 * 5 4 2 7 7 N 1.46510 * 109.46173 * 181.26309 * 5 4 2 8 8 C 1.34777 * 119.99916 * 154.93091 * 7 5 4 9 9 O 1.21595 * 120.00382 * 0.02562 * 8 7 5 10 10 C 1.47438 * 119.99543 * 179.97438 * 8 7 5 11 11 C 1.38738 * 120.33332 * 0.02562 * 10 8 7 12 12 C 1.38872 * 120.72603 * 179.97438 * 11 10 8 13 13 C 1.36360 * 121.05407 * 0.04462 * 12 11 10 14 14 C 1.40431 * 120.08625 * 359.97438 * 13 12 11 15 15 C 1.40807 * 121.26860 * 179.97438 * 14 13 12 16 16 C 1.36633 * 118.15289 * 179.97438 * 15 14 13 17 17 C 1.39232 * 119.91204 * 359.97438 * 16 15 14 18 18 N 1.31231 * 121.69625 * 0.02562 * 17 16 15 19 19 C 1.33350 * 121.35022 * 359.66658 * 18 17 16 20 20 C 1.53046 * 109.53856 * 61.24561 * 5 4 2 21 21 C 1.53188 * 109.30760 * 298.63191 * 20 5 4 22 22 N 1.46920 * 108.77580 * 54.63833 * 21 20 5 23 23 C 1.36939 * 120.63582 * 126.36663 * 22 21 20 24 24 H 1.07995 * 120.00292 * 209.22921 * 23 22 21 25 25 C 1.38821 * 119.99775 * 29.22866 * 23 22 21 26 26 N 1.31613 * 119.99866 * 24.23336 * 25 23 22 27 27 Si 1.86800 * 119.99862 * 204.23488 * 25 23 22 28 28 H 1.48493 * 109.46799 * 179.97438 * 27 25 23 29 29 H 1.48503 * 109.46833 * 299.99850 * 27 25 23 30 30 H 1.48503 * 109.47246 * 59.99528 * 27 25 23 31 31 H 1.09002 * 109.47380 * 180.35403 * 1 2 3 32 32 H 1.08998 * 109.46939 * 300.35854 * 1 2 3 33 33 H 1.08997 * 109.47070 * 60.35089 * 1 2 3 34 34 H 1.09001 * 109.56005 * 305.38961 * 4 2 1 35 35 H 1.09003 * 109.36332 * 185.33608 * 4 2 1 36 36 H 0.97001 * 119.99748 * 334.93351 * 7 5 4 37 37 H 1.07998 * 119.64045 * 359.97318 * 11 10 8 38 38 H 1.07993 * 119.47444 * 180.02562 * 12 11 10 39 39 H 1.08000 * 119.95146 * 179.97438 * 13 12 11 40 40 H 1.07992 * 120.92085 * 0.02562 * 15 14 13 41 41 H 1.08000 * 120.04240 * 180.02562 * 16 15 14 42 42 H 1.07999 * 119.15034 * 180.02562 * 17 16 15 43 43 H 1.09004 * 109.49599 * 178.68183 * 20 5 4 44 44 H 1.08999 * 109.49891 * 58.58386 * 20 5 4 45 45 H 1.08993 * 109.59025 * 294.84561 * 21 20 5 46 46 H 1.09004 * 109.70226 * 174.48951 * 21 20 5 47 47 H 0.97003 * 120.00561 * 5.76988 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0383 -0.7239 1.2455 5 6 1.6409 -2.2000 1.1726 6 1 0.5564 -2.2809 1.0994 7 7 2.1014 -2.8896 2.3804 8 6 1.4758 -4.0081 2.7977 9 8 0.5295 -4.4452 2.1714 10 6 1.9395 -4.7024 4.0129 11 6 3.0188 -4.2101 4.7323 12 6 3.4621 -4.8572 5.8783 13 6 2.8517 -5.9912 6.3265 14 6 1.7559 -6.5239 5.6282 15 6 1.1074 -7.6937 6.0684 16 6 0.0474 -8.1558 5.3407 17 6 -0.3623 -7.4717 4.1994 18 7 0.2455 -6.3818 3.7934 19 6 1.2823 -5.8756 4.4620 20 6 2.2843 -2.8431 -0.0582 21 6 1.7740 -2.1421 -1.3211 22 7 2.0226 -0.6996 -1.1945 23 6 2.7052 -0.0210 -2.1685 24 1 3.2873 0.8517 -1.9118 25 6 2.6490 -0.4549 -3.4860 26 7 1.6257 -1.1718 -3.8996 27 14 4.0259 -0.0214 -4.6716 28 1 3.7298 -0.6000 -6.0067 29 1 4.1351 1.4552 -4.7846 30 1 5.3075 -0.5753 -4.1657 31 1 -0.3634 -1.0276 0.0063 32 1 -0.3633 0.5194 0.8867 33 1 -0.3633 0.5084 -0.8931 34 1 1.5987 -0.2724 2.1349 35 1 3.1241 -0.6413 1.2936 36 1 2.8564 -2.5412 2.8798 37 1 3.5198 -3.3138 4.3975 38 1 4.3039 -4.4561 6.4231 39 1 3.2115 -6.4802 7.2197 40 1 1.4382 -8.2107 6.9570 41 1 -0.4726 -9.0501 5.6509 42 1 -1.2020 -7.8476 3.6336 43 1 2.0200 -3.8999 -0.0966 44 1 3.3678 -2.7405 0.0022 45 1 0.7043 -2.3203 -1.4310 46 1 2.3004 -2.5283 -2.1940 47 1 0.8715 -1.3264 -3.3094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947510460.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:46 Heat of formation + Delta-G solvation = 44.956147 kcal Electronic energy + Delta-G solvation = -29148.403243 eV Core-core repulsion = 25296.584916 eV Total energy + Delta-G solvation = -3851.818327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.20173 -39.51948 -37.85133 -37.12730 -34.54980 -33.68212 -32.67962 -31.21220 -30.78376 -30.29613 -29.04280 -26.93269 -24.98002 -24.31530 -23.73169 -23.38721 -21.84230 -21.60702 -20.27027 -18.70041 -18.47060 -17.90996 -17.25228 -16.97022 -16.11758 -15.80425 -15.02655 -15.02126 -14.53337 -14.25256 -14.19961 -14.13705 -13.84548 -13.53974 -13.41607 -13.27020 -13.21789 -12.82391 -12.62884 -12.39706 -12.09920 -12.01632 -11.71576 -11.59730 -11.16585 -10.83179 -10.74938 -10.68636 -10.53199 -10.34377 -10.14489 -9.93718 -9.93207 -9.67258 -9.29112 -9.12961 -9.11824 -8.71184 -8.50467 -8.30987 -6.83751 -6.01370 -3.19492 -0.12238 0.51420 1.50099 2.49472 3.26319 3.29967 3.51968 3.55487 3.73603 3.96619 4.02754 4.24899 4.40088 4.49740 4.57793 4.62108 4.69828 4.79377 4.96446 5.12255 5.22711 5.27791 5.39701 5.45964 5.54848 5.55837 5.60200 5.71774 5.77006 5.84973 5.95848 5.98890 6.00257 6.15304 6.20400 6.28054 6.34495 6.41141 6.47169 6.52215 6.58141 6.70056 6.85200 6.91903 7.03080 7.16036 7.29984 7.71893 7.84107 8.06416 8.50650 8.63455 9.17588 9.89705 10.35453 11.27120 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020084 B = 0.002514 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.837258 B =11134.189104 C =11400.926077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.172 3.828 3 H 0.066 0.934 4 C -0.132 4.132 5 C 0.153 3.847 6 H 0.086 0.914 7 N -0.725 5.725 8 C 0.548 3.452 9 O -0.497 6.497 10 C -0.101 4.101 11 C -0.066 4.066 12 C -0.125 4.125 13 C -0.075 4.075 14 C -0.112 4.112 15 C -0.061 4.061 16 C -0.175 4.175 17 C 0.131 3.869 18 N -0.435 5.435 19 C 0.160 3.840 20 C -0.142 4.142 21 C 0.155 3.845 22 N -0.592 5.592 23 C -0.349 4.349 24 H 0.055 0.945 25 C -0.023 4.023 26 N -0.915 5.915 27 Si 1.064 2.936 28 H -0.286 1.286 29 H -0.293 1.293 30 H -0.294 1.294 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.391 0.609 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.161 0.839 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.020 0.980 46 H 0.079 0.921 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.995 -10.980 24.695 27.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.084 0.916 4 C -0.172 4.172 5 C 0.050 3.950 6 H 0.104 0.896 7 N -0.377 5.377 8 C 0.333 3.667 9 O -0.371 6.371 10 C -0.105 4.105 11 C -0.087 4.087 12 C -0.142 4.142 13 C -0.094 4.094 14 C -0.114 4.114 15 C -0.087 4.087 16 C -0.195 4.195 17 C -0.042 4.042 18 N -0.141 5.141 19 C 0.037 3.963 20 C -0.182 4.182 21 C 0.028 3.972 22 N -0.314 5.314 23 C -0.479 4.479 24 H 0.072 0.928 25 C -0.226 4.226 26 N -0.554 5.554 27 Si 0.894 3.106 28 H -0.211 1.211 29 H -0.220 1.220 30 H -0.221 1.221 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.225 0.775 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.178 0.822 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.038 0.962 46 H 0.097 0.903 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.649 -10.980 21.851 24.510 hybrid contribution 0.137 -0.076 2.727 2.732 sum 1.786 -11.056 24.578 27.009 Atomic orbital electron populations 1.22335 0.98815 1.01065 1.00226 1.20346 0.91619 0.95214 0.86394 0.91557 1.22221 1.01227 0.94191 0.99582 1.21038 0.99803 0.91187 0.82972 0.89612 1.46251 1.35047 1.27283 1.29126 1.17914 0.83581 0.80957 0.84268 1.90861 1.26482 1.64175 1.55536 1.20076 0.97284 0.95905 0.97251 1.21480 0.94267 0.98953 0.93995 1.20844 1.00689 0.96021 0.96692 1.21145 0.93865 0.95625 0.98799 1.18846 0.98225 0.97221 0.97080 1.21449 0.94386 0.93915 0.98933 1.21980 0.98456 1.01872 0.97150 1.23227 0.97534 0.90248 0.93174 1.68363 1.06095 1.10568 1.29079 1.18655 0.92688 0.93873 0.91063 1.22444 1.00299 0.99162 0.96306 1.20892 0.97287 0.83970 0.95014 1.44198 1.64594 1.02560 1.20089 1.19932 1.25349 1.14080 0.88502 0.92755 1.25849 1.01428 0.99656 0.95636 1.70761 1.05580 1.41062 1.38035 0.83536 0.75286 0.75556 0.76194 1.21148 1.22039 1.22130 0.93222 0.94207 0.92774 0.92460 0.91871 0.77502 0.84717 0.84776 0.84907 0.84302 0.84432 0.82231 0.92653 0.92415 0.96217 0.90265 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 9.02 37.16 0.34 -2.88 16 2 C 0.17 3.55 3.27 -67.82 -0.22 3.33 16 3 H 0.07 1.38 7.93 -51.93 -0.41 0.97 16 4 C -0.13 -2.25 4.99 -26.84 -0.13 -2.38 16 5 C 0.15 2.74 2.21 -67.88 -0.15 2.59 16 6 H 0.09 1.73 5.93 -51.93 -0.31 1.42 16 7 N -0.72 -10.84 5.03 -54.83 -0.28 -11.11 16 8 C 0.55 9.17 7.73 -12.51 -0.10 9.07 16 9 O -0.50 -10.35 14.85 5.28 0.08 -10.28 16 10 C -0.10 -1.39 5.90 -104.62 -0.62 -2.01 16 11 C -0.07 -0.64 9.52 -39.16 -0.37 -1.01 16 12 C -0.12 -0.94 9.93 -40.02 -0.40 -1.33 16 13 C -0.08 -0.58 9.75 -39.43 -0.38 -0.96 16 14 C -0.11 -1.15 5.74 -106.82 -0.61 -1.77 16 15 C -0.06 -0.48 9.90 -39.19 -0.39 -0.87 16 16 C -0.17 -1.39 10.03 -39.79 -0.40 -1.79 16 17 C 0.13 1.44 11.15 -17.44 -0.19 1.25 16 18 N -0.43 -6.65 8.44 -10.76 -0.09 -6.74 16 19 C 0.16 2.24 6.61 -84.58 -0.56 1.68 16 20 C -0.14 -2.90 5.65 -26.61 -0.15 -3.05 16 21 C 0.15 3.75 4.29 -3.72 -0.02 3.73 16 22 N -0.59 -14.64 2.54 -165.03 -0.42 -15.06 16 23 C -0.35 -9.68 9.48 -15.05 -0.14 -9.82 16 24 H 0.05 1.50 7.94 -52.49 -0.42 1.09 16 25 C -0.02 -0.66 4.69 -17.43 -0.08 -0.74 16 26 N -0.91 -27.70 12.45 55.49 0.69 -27.01 16 27 Si 1.06 25.40 29.98 -169.99 -5.10 20.30 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 29 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 30 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 31 H 0.05 1.00 5.74 -51.93 -0.30 0.70 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.39 4.53 6.63 -40.82 -0.27 4.26 16 37 H 0.14 0.98 6.37 -52.49 -0.33 0.64 16 38 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 41 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.16 1.36 8.06 -52.49 -0.42 0.93 16 43 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.02 0.50 7.23 -51.93 -0.38 0.13 16 46 H 0.08 2.15 6.38 -51.93 -0.33 1.82 16 47 H 0.27 8.28 6.71 -40.82 -0.27 8.01 16 LS Contribution 374.47 15.07 5.64 5.64 Total: -1.00 -35.71 374.47 -10.52 -46.23 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.47 Total: 4.98 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -4.58 Total: -6.97 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: -0.10 Total: -59.92 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.10 Total: 20.30 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.71 -10.52 -46.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947510460.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.189 kcal (2) G-P(sol) polarization free energy of solvation -35.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds