Wall clock time and date at job start Tue Mar 31 2020 22:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70277 * 2 1 4 4 C 1.52760 * 109.43451 * 120.16709 * 2 1 3 5 5 C 1.53034 * 109.38235 * 65.41926 * 4 2 1 6 6 H 1.09005 * 109.45529 * 301.22915 * 5 4 2 7 7 N 1.46510 * 109.46173 * 181.26309 * 5 4 2 8 8 C 1.34777 * 119.99916 * 154.93091 * 7 5 4 9 9 O 1.21595 * 120.00382 * 0.02562 * 8 7 5 10 10 C 1.47438 * 119.99543 * 179.97438 * 8 7 5 11 11 C 1.38738 * 120.33332 * 0.02562 * 10 8 7 12 12 C 1.38872 * 120.72603 * 179.97438 * 11 10 8 13 13 C 1.36360 * 121.05407 * 0.04462 * 12 11 10 14 14 C 1.40431 * 120.08625 * 359.97438 * 13 12 11 15 15 C 1.40807 * 121.26860 * 179.97438 * 14 13 12 16 16 C 1.36633 * 118.15289 * 179.97438 * 15 14 13 17 17 C 1.39232 * 119.91204 * 359.97438 * 16 15 14 18 18 N 1.31231 * 121.69625 * 0.02562 * 17 16 15 19 19 C 1.33350 * 121.35022 * 359.66658 * 18 17 16 20 20 C 1.53046 * 109.53856 * 61.24561 * 5 4 2 21 21 C 1.53188 * 109.30760 * 298.63191 * 20 5 4 22 22 N 1.46920 * 108.77580 * 54.63833 * 21 20 5 23 23 C 1.36939 * 120.63582 * 126.36663 * 22 21 20 24 24 H 1.07995 * 120.00292 * 209.22921 * 23 22 21 25 25 C 1.38821 * 119.99775 * 29.22866 * 23 22 21 26 26 N 1.31613 * 119.99866 * 24.23336 * 25 23 22 27 27 Si 1.86800 * 119.99862 * 204.23488 * 25 23 22 28 28 H 1.48493 * 109.46799 * 179.97438 * 27 25 23 29 29 H 1.48503 * 109.46833 * 299.99850 * 27 25 23 30 30 H 1.48503 * 109.47246 * 59.99528 * 27 25 23 31 31 H 1.09002 * 109.47380 * 180.35403 * 1 2 3 32 32 H 1.08998 * 109.46939 * 300.35854 * 1 2 3 33 33 H 1.08997 * 109.47070 * 60.35089 * 1 2 3 34 34 H 1.09001 * 109.56005 * 305.38961 * 4 2 1 35 35 H 1.09003 * 109.36332 * 185.33608 * 4 2 1 36 36 H 0.97001 * 119.99748 * 334.93351 * 7 5 4 37 37 H 1.07998 * 119.64045 * 359.97318 * 11 10 8 38 38 H 1.07993 * 119.47444 * 180.02562 * 12 11 10 39 39 H 1.08000 * 119.95146 * 179.97438 * 13 12 11 40 40 H 1.07992 * 120.92085 * 0.02562 * 15 14 13 41 41 H 1.08000 * 120.04240 * 180.02562 * 16 15 14 42 42 H 1.07999 * 119.15034 * 180.02562 * 17 16 15 43 43 H 1.09004 * 109.49599 * 178.68183 * 20 5 4 44 44 H 1.08999 * 109.49891 * 58.58386 * 20 5 4 45 45 H 1.08993 * 109.59025 * 294.84561 * 21 20 5 46 46 H 1.09004 * 109.70226 * 174.48951 * 21 20 5 47 47 H 0.97003 * 120.00561 * 5.76988 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0383 -0.7239 1.2455 5 6 1.6409 -2.2000 1.1726 6 1 0.5564 -2.2809 1.0994 7 7 2.1014 -2.8896 2.3804 8 6 1.4758 -4.0081 2.7977 9 8 0.5295 -4.4452 2.1714 10 6 1.9395 -4.7024 4.0129 11 6 3.0188 -4.2101 4.7323 12 6 3.4621 -4.8572 5.8783 13 6 2.8517 -5.9912 6.3265 14 6 1.7559 -6.5239 5.6282 15 6 1.1074 -7.6937 6.0684 16 6 0.0474 -8.1558 5.3407 17 6 -0.3623 -7.4717 4.1994 18 7 0.2455 -6.3818 3.7934 19 6 1.2823 -5.8756 4.4620 20 6 2.2843 -2.8431 -0.0582 21 6 1.7740 -2.1421 -1.3211 22 7 2.0226 -0.6996 -1.1945 23 6 2.7052 -0.0210 -2.1685 24 1 3.2873 0.8517 -1.9118 25 6 2.6490 -0.4549 -3.4860 26 7 1.6257 -1.1718 -3.8996 27 14 4.0259 -0.0214 -4.6716 28 1 3.7298 -0.6000 -6.0067 29 1 4.1351 1.4552 -4.7846 30 1 5.3075 -0.5753 -4.1657 31 1 -0.3634 -1.0276 0.0063 32 1 -0.3633 0.5194 0.8867 33 1 -0.3633 0.5084 -0.8931 34 1 1.5987 -0.2724 2.1349 35 1 3.1241 -0.6413 1.2936 36 1 2.8564 -2.5412 2.8798 37 1 3.5198 -3.3138 4.3975 38 1 4.3039 -4.4561 6.4231 39 1 3.2115 -6.4802 7.2197 40 1 1.4382 -8.2107 6.9570 41 1 -0.4726 -9.0501 5.6509 42 1 -1.2020 -7.8476 3.6336 43 1 2.0200 -3.8999 -0.0966 44 1 3.3678 -2.7405 0.0022 45 1 0.7043 -2.3203 -1.4310 46 1 2.3004 -2.5283 -2.1940 47 1 0.8715 -1.3264 -3.3094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947510460.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:45 Heat of formation + Delta-G solvation = 21.555192 kcal Electronic energy + Delta-G solvation = -29149.417984 eV Core-core repulsion = 25296.584916 eV Total energy + Delta-G solvation = -3852.833068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.00407 -40.83122 -39.38545 -37.91459 -36.18351 -34.57521 -34.33104 -32.72255 -31.68990 -31.45728 -30.53893 -28.60426 -26.24693 -25.60449 -24.64232 -24.39344 -23.67265 -23.02299 -21.45045 -20.29460 -19.46711 -19.21773 -18.57778 -17.88358 -17.13552 -17.05046 -16.27100 -16.08191 -15.86304 -15.68859 -15.45742 -15.32650 -15.18890 -15.01447 -14.91485 -14.53365 -14.24895 -14.03237 -13.86083 -13.84257 -13.46601 -13.05904 -12.82141 -12.74703 -12.64742 -12.48752 -12.35409 -12.30247 -11.98589 -11.93535 -11.78212 -11.50048 -11.49429 -11.21741 -10.99076 -10.46573 -10.14044 -10.06594 -9.81365 -9.28670 -8.93298 -8.23136 -5.39808 -0.83751 -0.17584 0.75406 1.58153 1.66438 1.78092 1.84628 2.08949 2.23367 2.66562 3.15940 3.23464 3.33480 3.45361 3.54591 3.72260 3.75938 3.86325 3.94722 3.97461 4.04405 4.15730 4.20677 4.27461 4.37422 4.42427 4.49523 4.54342 4.59425 4.65491 4.71618 4.77687 4.91199 4.95839 4.96461 5.00999 5.03165 5.09800 5.14345 5.19274 5.20686 5.24819 5.35721 5.48307 5.53358 5.56892 5.83803 5.88374 6.39560 6.58719 7.07213 7.07440 7.31543 7.78814 8.25724 9.02219 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020084 B = 0.002514 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.837258 B =11134.189104 C =11400.926077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.163 3.837 3 H 0.069 0.931 4 C -0.117 4.117 5 C 0.166 3.834 6 H 0.060 0.940 7 N -0.710 5.710 8 C 0.545 3.455 9 O -0.553 6.553 10 C -0.152 4.152 11 C -0.045 4.045 12 C -0.129 4.129 13 C -0.055 4.055 14 C -0.131 4.131 15 C -0.049 4.049 16 C -0.177 4.177 17 C 0.116 3.884 18 N -0.503 5.503 19 C 0.129 3.871 20 C -0.127 4.127 21 C 0.167 3.833 22 N -0.606 5.606 23 C -0.350 4.350 24 H 0.058 0.942 25 C -0.080 4.080 26 N -0.946 5.946 27 Si 1.116 2.884 28 H -0.297 1.297 29 H -0.272 1.272 30 H -0.279 1.279 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.028 0.972 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.410 0.590 37 H 0.158 0.842 38 H 0.176 0.824 39 H 0.177 0.823 40 H 0.184 0.816 41 H 0.174 0.826 42 H 0.167 0.833 43 H 0.040 0.960 44 H 0.063 0.937 45 H -0.005 1.005 46 H 0.042 0.958 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.860 -11.045 29.437 31.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.056 3.944 3 H 0.088 0.912 4 C -0.156 4.156 5 C 0.061 3.939 6 H 0.078 0.922 7 N -0.364 5.364 8 C 0.333 3.667 9 O -0.431 6.431 10 C -0.156 4.156 11 C -0.065 4.065 12 C -0.147 4.147 13 C -0.073 4.073 14 C -0.133 4.133 15 C -0.074 4.074 16 C -0.196 4.196 17 C -0.056 4.056 18 N -0.211 5.211 19 C 0.006 3.994 20 C -0.167 4.167 21 C 0.041 3.959 22 N -0.329 5.329 23 C -0.480 4.480 24 H 0.076 0.924 25 C -0.276 4.276 26 N -0.588 5.588 27 Si 0.940 3.060 28 H -0.223 1.223 29 H -0.198 1.198 30 H -0.205 1.205 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.047 0.953 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.248 0.752 37 H 0.175 0.825 38 H 0.193 0.807 39 H 0.194 0.806 40 H 0.202 0.798 41 H 0.192 0.808 42 H 0.184 0.816 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.013 0.987 46 H 0.061 0.939 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.543 -11.018 26.668 29.210 hybrid contribution -0.779 -0.118 1.397 1.604 sum 3.764 -11.136 28.065 30.428 Atomic orbital electron populations 1.22220 0.98237 1.00266 1.00764 1.20610 0.92093 0.95489 0.86207 0.91232 1.22051 1.02059 0.92616 0.98861 1.20641 0.98089 0.92094 0.83065 0.92191 1.45934 1.35521 1.26868 1.28038 1.18543 0.82653 0.80641 0.84884 1.90821 1.29059 1.65659 1.57567 1.19920 1.00500 0.97572 0.97633 1.21844 0.92011 0.98992 0.93664 1.21310 1.01625 0.95850 0.95907 1.21706 0.91680 0.94958 0.98975 1.19204 0.99536 0.98199 0.96369 1.22002 0.93179 0.92689 0.99579 1.22288 0.98847 1.02616 0.95848 1.23607 0.97605 0.89807 0.94564 1.68263 1.08262 1.12936 1.31624 1.19013 0.93036 0.94627 0.92719 1.22223 1.00468 0.98024 0.95987 1.20579 0.95335 0.84579 0.95436 1.44387 1.64985 1.02686 1.20850 1.20235 1.24783 1.13830 0.89126 0.92443 1.27259 1.02707 0.99676 0.97916 1.70889 1.06270 1.43689 1.37991 0.82855 0.73060 0.76452 0.73626 1.22313 1.19802 1.20499 0.94766 0.90428 0.95287 0.88849 0.90604 0.75166 0.82501 0.80689 0.80552 0.79828 0.80826 0.81595 0.94100 0.91822 0.98742 0.93942 0.93800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.16 9.02 71.98 0.65 -5.51 16 2 C 0.16 6.64 3.27 44.83 0.15 6.79 16 3 H 0.07 2.80 7.93 -2.39 -0.02 2.78 16 4 C -0.12 -3.75 4.99 30.53 0.15 -3.60 16 5 C 0.17 6.01 2.21 45.02 0.10 6.11 16 6 H 0.06 2.53 5.93 -2.38 -0.01 2.52 16 7 N -0.71 -21.03 5.03 -445.64 -2.24 -23.27 16 8 C 0.54 19.04 7.73 86.67 0.67 19.71 16 9 O -0.55 -25.06 14.85 -4.02 -0.06 -25.12 16 10 C -0.15 -4.20 5.90 -19.86 -0.12 -4.31 16 11 C -0.04 -0.75 9.52 22.54 0.21 -0.53 16 12 C -0.13 -1.33 9.93 21.98 0.22 -1.12 16 13 C -0.05 -0.58 9.75 22.37 0.22 -0.36 16 14 C -0.13 -2.39 5.74 -21.29 -0.12 -2.51 16 15 C -0.05 -0.60 9.90 22.52 0.22 -0.38 16 16 C -0.18 -2.49 10.03 22.13 0.22 -2.27 16 17 C 0.12 2.67 11.15 85.02 0.95 3.62 16 18 N -0.50 -16.52 8.44 -187.96 -1.59 -18.10 16 19 C 0.13 3.66 6.61 40.61 0.27 3.93 16 20 C -0.13 -5.42 5.65 30.67 0.17 -5.25 16 21 C 0.17 8.64 4.29 86.36 0.37 9.01 16 22 N -0.61 -30.83 2.54 -676.04 -1.72 -32.55 16 23 C -0.35 -19.70 9.48 84.04 0.80 -18.91 16 24 H 0.06 3.16 7.94 -2.91 -0.02 3.14 16 25 C -0.08 -4.64 4.69 84.87 0.40 -4.24 16 26 N -0.95 -60.21 12.45 21.65 0.27 -59.94 16 27 Si 1.12 52.00 29.98 68.60 2.06 54.05 16 28 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 29 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 30 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 31 H 0.03 1.44 5.74 -2.39 -0.01 1.42 16 32 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.41 8.64 6.63 -92.71 -0.61 8.03 16 37 H 0.16 1.70 6.37 -2.91 -0.02 1.68 16 38 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 39 H 0.18 0.31 8.06 -2.91 -0.02 0.29 16 40 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 41 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 43 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 45 H -0.01 -0.30 7.23 -2.39 -0.02 -0.32 16 46 H 0.04 2.47 6.38 -2.38 -0.02 2.45 16 47 H 0.25 16.54 6.71 -92.71 -0.62 15.92 16 Total: -1.00 -87.79 374.47 2.78 -85.01 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.53 Total: 19.72 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 5.53 Total: 0.19 kcal Atomic # 7 Polarization: -128.58 SS G_CDS: -5.28 Total: -133.86 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.06 Total: -25.12 kcal Atomic # 14 Polarization: 52.00 SS G_CDS: 2.06 Total: 54.05 kcal Total: -87.79 2.78 -85.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947510460.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.567 kcal (2) G-P(sol) polarization free energy of solvation -87.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds