Wall clock time and date at job start Tue Mar 31 2020 22:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.70206 * 2 1 4 4 C 1.53192 * 109.58991 * 120.36027 * 2 1 3 5 5 C 1.53044 * 109.31488 * 174.42591 * 4 2 1 6 6 H 1.09004 * 109.45826 * 58.65368 * 5 4 2 7 7 N 1.46497 * 109.45860 * 178.61223 * 5 4 2 8 8 C 1.34775 * 119.99526 * 205.06367 * 7 5 4 9 9 O 1.21597 * 120.00574 * 0.02562 * 8 7 5 10 10 C 1.47435 * 119.99661 * 180.02562 * 8 7 5 11 11 C 1.38739 * 120.33362 * 359.72851 * 10 8 7 12 12 C 1.38875 * 120.73166 * 179.74562 * 11 10 8 13 13 C 1.36354 * 121.05125 * 0.53351 * 12 11 10 14 14 C 1.40445 * 120.08263 * 359.74656 * 13 12 11 15 15 C 1.40806 * 121.25227 * 180.02562 * 14 13 12 16 16 C 1.36634 * 118.15264 * 179.97438 * 15 14 13 17 17 C 1.39237 * 119.90559 * 359.97438 * 16 15 14 18 18 N 1.31236 * 121.69603 * 359.97438 * 17 16 15 19 19 C 1.33349 * 121.35449 * 0.04937 * 18 17 16 20 20 C 1.53043 * 109.53554 * 298.63475 * 5 4 2 21 21 C 1.53190 * 109.31272 * 61.36418 * 20 5 4 22 22 N 1.46923 * 109.58887 * 239.65066 * 2 1 3 23 23 C 1.36936 * 120.63101 * 6.58068 * 22 2 1 24 24 H 1.08004 * 119.99659 * 330.18020 * 23 22 2 25 25 C 1.38813 * 120.00636 * 150.18150 * 23 22 2 26 26 N 1.31625 * 119.99447 * 344.49475 * 25 23 22 27 27 Si 1.86792 * 120.00223 * 164.48844 * 25 23 22 28 28 H 1.48503 * 109.47209 * 90.00511 * 27 25 23 29 29 H 1.48505 * 109.47294 * 210.00392 * 27 25 23 30 30 H 1.48496 * 109.47511 * 330.00126 * 27 25 23 31 31 H 1.08998 * 109.46970 * 299.63781 * 1 2 3 32 32 H 1.09001 * 109.47635 * 59.64160 * 1 2 3 33 33 H 1.09004 * 109.47024 * 179.64155 * 1 2 3 34 34 H 1.08994 * 109.49915 * 54.47160 * 4 2 1 35 35 H 1.09006 * 109.52106 * 294.38965 * 4 2 1 36 36 H 0.96997 * 120.00251 * 25.06826 * 7 5 4 37 37 H 1.08000 * 119.63791 * 0.02562 * 11 10 8 38 38 H 1.07994 * 119.47262 * 180.25825 * 12 11 10 39 39 H 1.07995 * 119.95592 * 179.72274 * 13 12 11 40 40 H 1.08001 * 120.92159 * 359.97438 * 15 14 13 41 41 H 1.07993 * 120.04539 * 179.97438 * 16 15 14 42 42 H 1.07994 * 119.14734 * 180.02562 * 17 16 15 43 43 H 1.09000 * 109.49776 * 301.41368 * 20 5 4 44 44 H 1.09001 * 109.49800 * 181.31696 * 20 5 4 45 45 H 1.08997 * 109.58984 * 65.15567 * 21 20 5 46 46 H 1.09004 * 109.58613 * 185.57580 * 21 20 5 47 47 H 0.96997 * 119.99477 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7295 1.2453 5 6 3.5676 -0.8480 1.1701 6 1 4.0061 0.1475 1.0993 7 7 4.0653 -1.5158 2.3753 8 6 5.3291 -1.3011 2.7913 9 8 6.0561 -0.5528 2.1667 10 6 5.8302 -1.9736 4.0039 11 6 5.0049 -2.8244 4.7250 12 6 5.4700 -3.4662 5.8654 13 6 6.7430 -3.2704 6.3129 14 6 7.6101 -2.4128 5.6163 15 6 8.9295 -2.1933 6.0561 16 6 9.7187 -1.3467 5.3299 17 6 9.2100 -0.7303 4.1897 18 7 7.9797 -0.9392 3.7835 19 6 7.1586 -1.7534 4.4477 20 6 3.9570 -1.6656 -0.0637 21 6 3.4651 -0.9467 -1.3238 22 7 2.0225 -0.6994 -1.1945 23 6 1.1537 -1.1133 -2.1686 24 1 0.1398 -1.3805 -1.9098 25 6 1.5759 -1.1894 -3.4888 26 7 2.6865 -0.5883 -3.8601 27 14 0.5683 -2.1448 -4.7381 28 1 -0.4259 -1.2396 -5.3687 29 1 1.4684 -2.6960 -5.7828 30 1 -0.1388 -3.2585 -4.0563 31 1 -0.3633 0.5082 0.8932 32 1 -0.3634 0.5194 -0.8867 33 1 -0.3633 -1.0277 -0.0064 34 1 1.6031 -1.7254 1.2912 35 1 1.7660 -0.1674 2.1371 36 1 3.4853 -2.1125 2.8737 37 1 3.9910 -2.9929 4.3934 38 1 4.8114 -4.1274 6.4089 39 1 7.0848 -3.7751 7.2044 40 1 9.3073 -2.6805 6.9429 41 1 10.7354 -1.1560 5.6398 42 1 9.8446 -0.0638 3.6246 43 1 3.4984 -2.6527 -0.0055 44 1 5.0413 -1.7694 -0.1039 45 1 3.9903 0.0023 -1.4318 46 1 3.6519 -1.5714 -2.1973 47 1 2.9818 -0.6418 -4.7825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947510465.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:58 Heat of formation + Delta-G solvation = 48.238809 kcal Electronic energy + Delta-G solvation = -28962.768580 eV Core-core repulsion = 25111.092601 eV Total energy + Delta-G solvation = -3851.675980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.16247 -39.38695 -37.61309 -37.06714 -34.47165 -33.64481 -32.38112 -31.49409 -30.76502 -30.35894 -29.15873 -26.33241 -25.11035 -24.61757 -23.71507 -23.38573 -21.88719 -20.86681 -20.01073 -19.24113 -18.45509 -17.84835 -17.05607 -16.37191 -16.02559 -15.60348 -15.06344 -14.94291 -14.93063 -14.22756 -14.12993 -14.09034 -13.84370 -13.61801 -13.32260 -13.24789 -13.06432 -12.74316 -12.60160 -12.37250 -11.98889 -11.65714 -11.54985 -11.16656 -11.04264 -10.89727 -10.83559 -10.72449 -10.59907 -10.26967 -10.08121 -9.99251 -9.90525 -9.66481 -9.44674 -9.10440 -9.08601 -8.65620 -8.49195 -8.33914 -6.57946 -5.72451 -3.16527 -0.08646 0.54661 1.53589 2.52990 3.31763 3.35851 3.40824 3.47392 3.48878 4.00699 4.06131 4.28420 4.43345 4.53052 4.53196 4.60652 4.73761 4.82944 4.99554 5.17250 5.31182 5.39003 5.44814 5.49762 5.59223 5.63118 5.66663 5.75003 5.84159 5.88542 6.01621 6.07340 6.18593 6.21398 6.32440 6.36170 6.47487 6.50274 6.51791 6.58084 6.71902 6.87822 6.98745 7.09215 7.14933 7.44917 7.74081 7.78684 7.86968 7.89081 8.52134 8.57595 9.27385 9.91195 10.48976 11.36263 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020446 B = 0.002480 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.145026 B =11286.362868 C =11827.634102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.134 4.134 5 C 0.153 3.847 6 H 0.082 0.918 7 N -0.725 5.725 8 C 0.547 3.453 9 O -0.496 6.496 10 C -0.100 4.100 11 C -0.067 4.067 12 C -0.124 4.124 13 C -0.076 4.076 14 C -0.112 4.112 15 C -0.061 4.061 16 C -0.175 4.175 17 C 0.130 3.870 18 N -0.434 5.434 19 C 0.160 3.840 20 C -0.146 4.146 21 C 0.176 3.824 22 N -0.587 5.587 23 C -0.251 4.251 24 H 0.069 0.931 25 C 0.002 3.998 26 N -0.901 5.901 27 Si 0.899 3.101 28 H -0.288 1.288 29 H -0.290 1.290 30 H -0.280 1.280 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.390 0.610 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.160 0.840 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.087 0.913 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.162 -5.708 24.147 26.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.064 3.936 3 H 0.044 0.956 4 C -0.174 4.174 5 C 0.050 3.950 6 H 0.100 0.900 7 N -0.377 5.377 8 C 0.332 3.668 9 O -0.370 6.370 10 C -0.104 4.104 11 C -0.088 4.088 12 C -0.142 4.142 13 C -0.095 4.095 14 C -0.114 4.114 15 C -0.087 4.087 16 C -0.195 4.195 17 C -0.042 4.042 18 N -0.140 5.140 19 C 0.037 3.963 20 C -0.187 4.187 21 C 0.050 3.950 22 N -0.311 5.311 23 C -0.381 4.381 24 H 0.087 0.913 25 C -0.196 4.196 26 N -0.546 5.546 27 Si 0.729 3.271 28 H -0.215 1.215 29 H -0.217 1.217 30 H -0.206 1.206 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.224 0.776 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.178 0.822 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.039 0.961 46 H 0.105 0.895 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.332 -4.746 22.713 25.010 hybrid contribution -0.307 -1.298 0.377 1.386 sum 9.025 -6.044 23.090 25.518 Atomic orbital electron populations 1.21788 0.95809 1.01387 1.00257 1.20354 0.93009 0.93604 0.86659 0.95556 1.22380 0.93776 1.01555 0.99641 1.21020 0.94085 0.96783 0.83087 0.90008 1.46268 1.13006 1.48996 1.29382 1.17906 0.82282 0.82403 0.84221 1.90864 1.55439 1.35227 1.55485 1.20103 0.92956 1.00054 0.97304 1.21481 0.99436 0.93828 0.94018 1.20842 0.96269 1.00356 0.96754 1.21139 0.93464 0.96113 0.98817 1.18845 0.95577 0.99961 0.96988 1.21446 0.92113 0.96221 0.98949 1.21979 1.01509 0.98805 0.97177 1.23227 0.91952 0.95874 0.93173 1.68364 1.03479 1.13095 1.29086 1.18656 0.93163 0.93425 0.91051 1.22565 0.99800 0.99496 0.96795 1.20727 0.83206 0.97278 0.93824 1.44159 1.02985 1.64915 1.19032 1.19137 0.95155 1.37662 0.86097 0.91346 1.25112 0.97888 0.99619 0.97010 1.70031 1.24060 1.43797 1.16667 0.86351 0.79392 0.79978 0.81347 1.21459 1.21660 1.20568 0.94347 0.91895 0.92787 0.91879 0.92734 0.77573 0.84703 0.84809 0.84947 0.84334 0.84460 0.82237 0.92777 0.92850 0.96130 0.89455 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 7.95 37.16 0.30 -2.21 16 2 C 0.17 3.55 3.50 -67.60 -0.24 3.31 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.13 -2.28 4.84 -26.61 -0.13 -2.41 16 5 C 0.15 2.80 2.42 -67.89 -0.16 2.63 16 6 H 0.08 1.69 7.57 -51.93 -0.39 1.30 16 7 N -0.72 -10.98 5.03 -54.84 -0.28 -11.26 16 8 C 0.55 9.28 7.73 -12.52 -0.10 9.18 16 9 O -0.50 -10.50 14.85 5.28 0.08 -10.42 16 10 C -0.10 -1.39 5.91 -104.61 -0.62 -2.01 16 11 C -0.07 -0.66 9.52 -39.16 -0.37 -1.03 16 12 C -0.12 -0.95 9.93 -40.02 -0.40 -1.35 16 13 C -0.08 -0.60 9.75 -39.43 -0.38 -0.98 16 14 C -0.11 -1.17 5.74 -106.82 -0.61 -1.78 16 15 C -0.06 -0.49 9.90 -39.19 -0.39 -0.88 16 16 C -0.17 -1.41 10.03 -39.79 -0.40 -1.81 16 17 C 0.13 1.45 11.15 -17.43 -0.19 1.26 16 18 N -0.43 -6.71 8.44 -10.76 -0.09 -6.80 16 19 C 0.16 2.26 6.61 -84.58 -0.56 1.71 16 20 C -0.15 -3.03 5.65 -26.61 -0.15 -3.18 16 21 C 0.18 4.36 5.28 -3.71 -0.02 4.34 16 22 N -0.59 -14.61 2.99 -164.78 -0.49 -15.10 16 23 C -0.25 -6.74 8.58 -15.06 -0.13 -6.87 16 24 H 0.07 1.78 6.23 -52.48 -0.33 1.46 16 25 C 0.00 0.07 4.94 -17.43 -0.09 -0.02 16 26 N -0.90 -26.53 11.23 55.49 0.62 -25.91 16 27 Si 0.90 21.76 29.58 -169.99 -5.03 16.73 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.27 7.67 -51.93 -0.40 0.87 16 33 H 0.05 1.00 7.40 -51.93 -0.38 0.62 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.39 4.59 6.63 -40.82 -0.27 4.32 16 37 H 0.14 0.99 6.37 -52.49 -0.33 0.66 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 39 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 40 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 47 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 376.44 15.07 5.67 5.67 Total: -1.00 -35.05 376.44 -10.79 -45.84 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.63 Total: 3.34 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -4.64 Total: -2.10 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.24 Total: -59.07 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.08 Total: -10.42 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.05 -10.79 -45.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947510465.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.075 kcal (2) G-P(sol) polarization free energy of solvation -35.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds