Wall clock time and date at job start Tue Mar 31 2020 22:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.70255 * 2 1 4 4 C 1.53191 * 109.58839 * 120.35585 * 2 1 3 5 5 C 1.53032 * 109.31817 * 174.42362 * 4 2 1 6 6 H 1.09002 * 109.44800 * 58.64333 * 5 4 2 7 7 N 1.46497 * 109.46302 * 178.61149 * 5 4 2 8 8 C 1.34779 * 120.00096 * 205.06797 * 7 5 4 9 9 O 1.21544 * 120.00019 * 0.02562 * 8 7 5 10 10 C 1.47907 * 119.99938 * 180.02562 * 8 7 5 11 11 C 1.38889 * 121.11349 * 5.66396 * 10 8 7 12 12 C 1.39270 * 119.58032 * 179.97438 * 11 10 8 13 13 N 1.30995 * 121.88476 * 0.05808 * 12 11 10 14 14 C 1.33538 * 121.82403 * 359.97438 * 13 12 11 15 15 C 1.40720 * 120.96613 * 179.97438 * 14 13 12 16 16 C 1.36060 * 119.73634 * 180.02562 * 15 14 13 17 17 C 1.39353 * 121.05740 * 359.76837 * 16 15 14 18 18 C 1.36244 * 120.83680 * 0.49514 * 17 16 15 19 19 C 1.40107 * 119.64596 * 359.49022 * 18 17 16 20 20 C 1.53038 * 109.53838 * 298.63363 * 5 4 2 21 21 C 1.53190 * 109.31203 * 61.36340 * 20 5 4 22 22 N 1.46926 * 108.77739 * 305.36485 * 21 20 5 23 23 C 1.36935 * 120.63298 * 233.63650 * 22 21 20 24 24 H 1.07997 * 120.00195 * 145.89587 * 23 22 21 25 25 C 1.38819 * 119.99814 * 325.88275 * 23 22 21 26 26 N 1.31614 * 119.99969 * 345.74737 * 25 23 22 27 27 Si 1.86798 * 119.99583 * 165.73892 * 25 23 22 28 28 H 1.48497 * 109.47018 * 90.00720 * 27 25 23 29 29 H 1.48502 * 109.46867 * 210.00141 * 27 25 23 30 30 H 1.48502 * 109.47476 * 330.00399 * 27 25 23 31 31 H 1.09002 * 109.47138 * 180.35637 * 1 2 3 32 32 H 1.08995 * 109.47466 * 300.35664 * 1 2 3 33 33 H 1.09001 * 109.47181 * 60.36025 * 1 2 3 34 34 H 1.09004 * 109.50073 * 54.46774 * 4 2 1 35 35 H 1.09002 * 109.49680 * 294.37397 * 4 2 1 36 36 H 0.97003 * 119.99991 * 25.06957 * 7 5 4 37 37 H 1.08003 * 120.21021 * 359.97438 * 11 10 8 38 38 H 1.07996 * 119.05857 * 180.02562 * 12 11 10 39 39 H 1.07992 * 120.13078 * 359.97438 * 15 14 13 40 40 H 1.08002 * 119.46827 * 180.02562 * 16 15 14 41 41 H 1.08003 * 119.58131 * 180.28825 * 17 16 15 42 42 H 1.08004 * 120.17604 * 179.76372 * 18 17 16 43 43 H 1.08998 * 109.49939 * 181.31417 * 20 5 4 44 44 H 1.09005 * 109.49686 * 301.41099 * 20 5 4 45 45 H 1.08998 * 109.58889 * 65.15309 * 21 20 5 46 46 H 1.09004 * 109.58538 * 185.58036 * 21 20 5 47 47 H 0.96998 * 120.00046 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 3.5674 -0.8480 1.1702 6 1 4.0059 0.1475 1.0992 7 7 4.0651 -1.5157 2.3755 8 6 5.3289 -1.3010 2.7917 9 8 6.0556 -0.5531 2.1673 10 6 5.8315 -1.9756 4.0082 11 6 5.0632 -2.9224 4.6732 12 6 5.5682 -3.5384 5.8156 13 7 6.7552 -3.2509 6.2894 14 6 7.5484 -2.3508 5.7030 15 6 8.8202 -2.0555 6.2278 16 6 9.6077 -1.1336 5.6103 17 6 9.1778 -0.4765 4.4591 18 6 7.9507 -0.7329 3.9256 19 6 7.1135 -1.6767 4.5350 20 6 3.9569 -1.6657 -0.0633 21 6 3.4651 -0.9470 -1.3236 22 7 2.0226 -0.6996 -1.1945 23 6 1.1537 -1.1136 -2.1685 24 1 0.1616 -1.4463 -1.9013 25 6 1.5481 -1.1055 -3.4995 26 7 2.6303 -0.4496 -3.8612 27 14 0.5428 -2.0257 -4.7770 28 1 -0.4935 -1.1212 -5.3367 29 1 1.4358 -2.4906 -5.8686 30 1 -0.1131 -3.1966 -4.1414 31 1 -0.3633 -1.0277 0.0064 32 1 -0.3634 0.5193 0.8867 33 1 -0.3633 0.5082 -0.8932 34 1 1.6030 -1.7253 1.2914 35 1 1.7660 -0.1668 2.1368 36 1 3.4851 -2.1123 2.8740 37 1 4.0803 -3.1794 4.3067 38 1 4.9638 -4.2737 6.3258 39 1 9.1695 -2.5579 7.1176 40 1 10.5832 -0.9106 6.0166 41 1 9.8243 0.2477 3.9857 42 1 7.6268 -0.2146 3.0351 43 1 5.0412 -1.7696 -0.1035 44 1 3.4983 -2.6529 -0.0051 45 1 3.9903 0.0020 -1.4316 46 1 3.6519 -1.5719 -2.1970 47 1 2.9056 -0.4436 -4.7912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947516810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:01 Heat of formation + Delta-G solvation = 43.591101 kcal Electronic energy + Delta-G solvation = -28954.741298 eV Core-core repulsion = 25102.863779 eV Total energy + Delta-G solvation = -3851.877519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.30305 -39.58602 -37.71408 -37.32126 -34.77545 -33.68921 -32.44081 -31.48345 -30.77540 -30.28612 -29.35860 -26.47334 -25.53332 -24.57727 -23.79989 -23.03273 -21.98815 -21.18350 -20.32343 -19.38885 -18.33678 -17.75871 -17.51271 -16.36914 -15.93361 -15.66085 -15.18610 -15.13258 -14.94854 -14.60600 -14.29124 -14.12270 -13.96708 -13.76060 -13.47442 -13.34789 -13.21516 -12.84669 -12.74709 -12.02462 -11.85569 -11.63824 -11.59447 -11.26516 -11.16479 -11.00375 -10.91947 -10.72355 -10.67440 -10.43055 -10.37410 -10.17723 -10.08803 -9.80790 -9.61352 -9.30764 -9.05621 -8.87001 -8.49727 -8.44099 -6.60632 -5.80985 -3.29420 -0.12855 0.53767 1.52654 2.58194 3.02634 3.03081 3.34926 3.42480 3.43606 3.91114 3.97697 4.32246 4.39017 4.46090 4.48912 4.61073 4.85203 4.97053 5.09438 5.18888 5.28104 5.31592 5.36533 5.40564 5.50763 5.52672 5.69999 5.77874 5.86710 5.92531 6.08680 6.11088 6.14043 6.27564 6.28022 6.30698 6.38152 6.39682 6.45620 6.57192 6.65396 6.72616 6.79931 7.00822 7.07563 7.30007 7.48031 7.57725 7.60534 7.80940 8.15344 8.46713 9.19537 9.81717 10.41835 11.27732 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021103 B = 0.002441 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.506694 B =11468.028397 C =11953.165329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.135 4.135 5 C 0.150 3.850 6 H 0.085 0.915 7 N -0.711 5.711 8 C 0.556 3.444 9 O -0.524 6.524 10 C -0.064 4.064 11 C -0.142 4.142 12 C 0.126 3.874 13 N -0.461 5.461 14 C 0.123 3.877 15 C -0.102 4.102 16 C -0.097 4.097 17 C -0.120 4.120 18 C -0.098 4.098 19 C -0.067 4.067 20 C -0.147 4.147 21 C 0.179 3.821 22 N -0.586 5.586 23 C -0.256 4.256 24 H 0.067 0.933 25 C 0.008 3.992 26 N -0.899 5.899 27 Si 0.899 3.101 28 H -0.286 1.286 29 H -0.290 1.290 30 H -0.279 1.279 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.396 0.604 37 H 0.143 0.857 38 H 0.166 0.834 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.171 0.829 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.022 0.978 46 H 0.081 0.919 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.506 -3.613 20.213 21.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.175 4.175 5 C 0.047 3.953 6 H 0.103 0.897 7 N -0.361 5.361 8 C 0.342 3.658 9 O -0.402 6.402 10 C -0.075 4.075 11 C -0.163 4.163 12 C -0.046 4.046 13 N -0.170 5.170 14 C 0.002 3.998 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.138 4.138 18 C -0.116 4.116 19 C -0.070 4.070 20 C -0.187 4.187 21 C 0.052 3.948 22 N -0.309 5.309 23 C -0.386 4.386 24 H 0.084 0.916 25 C -0.191 4.191 26 N -0.542 5.542 27 Si 0.729 3.271 28 H -0.213 1.213 29 H -0.216 1.216 30 H -0.205 1.205 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.230 0.770 37 H 0.160 0.840 38 H 0.183 0.817 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.188 0.812 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.041 0.959 46 H 0.099 0.901 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.467 -3.406 20.303 22.260 hybrid contribution -1.041 -0.492 -1.183 1.651 sum 7.426 -3.898 19.120 20.879 Atomic orbital electron populations 1.21774 0.95666 1.01354 1.00386 1.20365 0.93150 0.93548 0.86542 0.95516 1.22403 0.93359 1.01772 0.99922 1.21146 0.94521 0.96845 0.82766 0.89683 1.46286 1.12601 1.48042 1.29128 1.18046 0.82478 0.81607 0.83712 1.90607 1.55516 1.37326 1.56720 1.20503 0.94358 0.97031 0.95653 1.22446 1.00837 0.96464 0.96581 1.22895 0.91832 0.97173 0.92740 1.67801 1.04850 1.13481 1.30861 1.18894 0.94960 0.93751 0.92228 1.20764 0.91976 0.98661 1.00639 1.21007 0.99763 0.95488 0.95388 1.21130 0.96650 1.00020 0.96044 1.22138 0.93082 0.95591 1.00768 1.18702 0.93970 0.98262 0.96042 1.22587 0.99816 0.99624 0.96723 1.20663 0.83598 0.97107 0.93417 1.44108 1.02798 1.64872 1.19162 1.19063 0.97164 1.36957 0.85388 0.91585 1.25225 0.97898 0.98655 0.97359 1.70010 1.25767 1.41985 1.16433 0.86364 0.79492 0.79814 0.81455 1.21332 1.21610 1.20455 0.92835 0.94359 0.91754 0.91725 0.92595 0.76966 0.83950 0.81739 0.84680 0.85270 0.85288 0.81206 0.92804 0.92548 0.95944 0.90051 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 7.99 37.16 0.30 -2.09 16 2 C 0.17 3.36 3.50 -67.60 -0.24 3.13 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.12 4.84 -26.62 -0.13 -2.25 16 5 C 0.15 2.46 2.42 -67.90 -0.16 2.29 16 6 H 0.09 1.57 7.57 -51.93 -0.39 1.18 16 7 N -0.71 -9.37 5.03 -54.70 -0.28 -9.64 16 8 C 0.56 8.05 7.72 -12.30 -0.09 7.95 16 9 O -0.52 -9.18 13.19 5.33 0.07 -9.11 16 10 C -0.06 -0.80 5.94 -104.34 -0.62 -1.42 16 11 C -0.14 -1.33 9.60 -38.96 -0.37 -1.71 16 12 C 0.13 1.15 11.14 -17.52 -0.20 0.95 16 13 N -0.46 -5.37 10.30 -11.00 -0.11 -5.48 16 14 C 0.12 1.52 6.61 -84.87 -0.56 0.96 16 15 C -0.10 -1.04 9.99 -39.43 -0.39 -1.43 16 16 C -0.10 -0.87 9.94 -39.95 -0.40 -1.27 16 17 C -0.12 -1.24 9.96 -39.88 -0.40 -1.63 16 18 C -0.10 -1.26 9.25 -39.60 -0.37 -1.63 16 19 C -0.07 -0.88 5.76 -106.52 -0.61 -1.50 16 20 C -0.15 -2.79 5.65 -26.61 -0.15 -2.94 16 21 C 0.18 4.17 5.26 -3.71 -0.02 4.15 16 22 N -0.59 -13.91 2.96 -164.77 -0.49 -14.40 16 23 C -0.26 -6.66 8.43 -15.06 -0.13 -6.79 16 24 H 0.07 1.68 6.39 -52.49 -0.34 1.34 16 25 C 0.01 0.22 4.94 -17.43 -0.09 0.14 16 26 N -0.90 -25.70 11.49 55.49 0.64 -25.07 16 27 Si 0.90 21.18 29.58 -169.99 -5.03 16.16 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 31 H 0.05 0.95 7.42 -51.93 -0.39 0.57 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.40 3.97 6.77 -40.82 -0.28 3.70 16 37 H 0.14 0.90 6.55 -52.48 -0.34 0.55 16 38 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 42 H 0.17 2.47 4.98 -52.48 -0.26 2.21 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 2.13 6.45 -51.93 -0.33 1.79 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 374.10 15.07 5.64 5.64 Total: -1.00 -31.57 374.10 -10.70 -42.27 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.51 Total: 4.71 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -4.63 Total: -5.08 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.24 Total: -54.59 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.07 Total: -9.11 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.57 -10.70 -42.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947516810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.865 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds