Wall clock time and date at job start Tue Mar 31 2020 22:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.70255 * 2 1 4 4 C 1.53191 * 109.58839 * 120.35585 * 2 1 3 5 5 C 1.53032 * 109.31817 * 174.42362 * 4 2 1 6 6 H 1.09002 * 109.44800 * 58.64333 * 5 4 2 7 7 N 1.46497 * 109.46302 * 178.61149 * 5 4 2 8 8 C 1.34779 * 120.00096 * 205.06797 * 7 5 4 9 9 O 1.21544 * 120.00019 * 0.02562 * 8 7 5 10 10 C 1.47907 * 119.99938 * 180.02562 * 8 7 5 11 11 C 1.38889 * 121.11349 * 5.66396 * 10 8 7 12 12 C 1.39270 * 119.58032 * 179.97438 * 11 10 8 13 13 N 1.30995 * 121.88476 * 0.05808 * 12 11 10 14 14 C 1.33538 * 121.82403 * 359.97438 * 13 12 11 15 15 C 1.40720 * 120.96613 * 179.97438 * 14 13 12 16 16 C 1.36060 * 119.73634 * 180.02562 * 15 14 13 17 17 C 1.39353 * 121.05740 * 359.76837 * 16 15 14 18 18 C 1.36244 * 120.83680 * 0.49514 * 17 16 15 19 19 C 1.40107 * 119.64596 * 359.49022 * 18 17 16 20 20 C 1.53038 * 109.53838 * 298.63363 * 5 4 2 21 21 C 1.53190 * 109.31203 * 61.36340 * 20 5 4 22 22 N 1.46926 * 108.77739 * 305.36485 * 21 20 5 23 23 C 1.36935 * 120.63298 * 233.63650 * 22 21 20 24 24 H 1.07997 * 120.00195 * 145.89587 * 23 22 21 25 25 C 1.38819 * 119.99814 * 325.88275 * 23 22 21 26 26 N 1.31614 * 119.99969 * 345.74737 * 25 23 22 27 27 Si 1.86798 * 119.99583 * 165.73892 * 25 23 22 28 28 H 1.48497 * 109.47018 * 90.00720 * 27 25 23 29 29 H 1.48502 * 109.46867 * 210.00141 * 27 25 23 30 30 H 1.48502 * 109.47476 * 330.00399 * 27 25 23 31 31 H 1.09002 * 109.47138 * 180.35637 * 1 2 3 32 32 H 1.08995 * 109.47466 * 300.35664 * 1 2 3 33 33 H 1.09001 * 109.47181 * 60.36025 * 1 2 3 34 34 H 1.09004 * 109.50073 * 54.46774 * 4 2 1 35 35 H 1.09002 * 109.49680 * 294.37397 * 4 2 1 36 36 H 0.97003 * 119.99991 * 25.06957 * 7 5 4 37 37 H 1.08003 * 120.21021 * 359.97438 * 11 10 8 38 38 H 1.07996 * 119.05857 * 180.02562 * 12 11 10 39 39 H 1.07992 * 120.13078 * 359.97438 * 15 14 13 40 40 H 1.08002 * 119.46827 * 180.02562 * 16 15 14 41 41 H 1.08003 * 119.58131 * 180.28825 * 17 16 15 42 42 H 1.08004 * 120.17604 * 179.76372 * 18 17 16 43 43 H 1.08998 * 109.49939 * 181.31417 * 20 5 4 44 44 H 1.09005 * 109.49686 * 301.41099 * 20 5 4 45 45 H 1.08998 * 109.58889 * 65.15309 * 21 20 5 46 46 H 1.09004 * 109.58538 * 185.58036 * 21 20 5 47 47 H 0.96998 * 120.00046 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 3.5674 -0.8480 1.1702 6 1 4.0059 0.1475 1.0992 7 7 4.0651 -1.5157 2.3755 8 6 5.3289 -1.3010 2.7917 9 8 6.0556 -0.5531 2.1673 10 6 5.8315 -1.9756 4.0082 11 6 5.0632 -2.9224 4.6732 12 6 5.5682 -3.5384 5.8156 13 7 6.7552 -3.2509 6.2894 14 6 7.5484 -2.3508 5.7030 15 6 8.8202 -2.0555 6.2278 16 6 9.6077 -1.1336 5.6103 17 6 9.1778 -0.4765 4.4591 18 6 7.9507 -0.7329 3.9256 19 6 7.1135 -1.6767 4.5350 20 6 3.9569 -1.6657 -0.0633 21 6 3.4651 -0.9470 -1.3236 22 7 2.0226 -0.6996 -1.1945 23 6 1.1537 -1.1136 -2.1685 24 1 0.1616 -1.4463 -1.9013 25 6 1.5481 -1.1055 -3.4995 26 7 2.6303 -0.4496 -3.8612 27 14 0.5428 -2.0257 -4.7770 28 1 -0.4935 -1.1212 -5.3367 29 1 1.4358 -2.4906 -5.8686 30 1 -0.1131 -3.1966 -4.1414 31 1 -0.3633 -1.0277 0.0064 32 1 -0.3634 0.5193 0.8867 33 1 -0.3633 0.5082 -0.8932 34 1 1.6030 -1.7253 1.2914 35 1 1.7660 -0.1668 2.1368 36 1 3.4851 -2.1123 2.8740 37 1 4.0803 -3.1794 4.3067 38 1 4.9638 -4.2737 6.3258 39 1 9.1695 -2.5579 7.1176 40 1 10.5832 -0.9106 6.0166 41 1 9.8243 0.2477 3.9857 42 1 7.6268 -0.2146 3.0351 43 1 5.0412 -1.7696 -0.1035 44 1 3.4983 -2.6529 -0.0051 45 1 3.9903 0.0020 -1.4316 46 1 3.6519 -1.5719 -2.1970 47 1 2.9056 -0.4436 -4.7912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947516810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:00 Heat of formation + Delta-G solvation = 24.320090 kcal Electronic energy + Delta-G solvation = -28955.576952 eV Core-core repulsion = 25102.863779 eV Total energy + Delta-G solvation = -3852.713173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.18307 -40.74510 -39.22767 -38.09679 -36.21778 -34.64981 -34.15499 -32.98819 -31.65170 -31.48253 -30.64694 -28.01833 -26.89265 -25.94371 -24.58556 -24.14553 -23.49444 -22.43533 -21.65750 -20.95906 -19.23358 -18.69552 -18.38458 -18.16931 -17.20386 -16.90488 -16.51921 -16.26486 -15.87683 -15.73037 -15.60948 -15.43756 -15.21138 -14.93796 -14.83541 -14.60125 -14.35429 -14.24363 -14.06558 -13.32552 -12.97004 -12.80209 -12.74592 -12.70602 -12.63291 -12.59318 -12.36106 -12.33179 -12.12661 -11.87766 -11.71901 -11.57957 -11.52463 -11.45126 -11.17291 -10.55523 -10.35689 -10.13543 -9.81829 -9.30402 -8.57891 -7.84491 -5.35501 -0.96428 -0.23214 0.65661 1.46988 1.48757 1.57536 1.72454 1.91102 2.08322 2.52299 3.08316 3.27415 3.32302 3.41651 3.60366 3.63037 3.68053 3.83926 3.87205 4.04098 4.16243 4.21847 4.25874 4.38319 4.40208 4.53843 4.56691 4.61535 4.70637 4.75022 4.76377 4.80755 4.96220 5.03598 5.05402 5.06492 5.15334 5.17109 5.33707 5.37466 5.41263 5.49325 5.49589 5.56837 5.58703 5.69044 5.74162 5.87357 6.42389 6.45862 6.79743 7.09300 7.18047 7.88068 8.43782 9.22711 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021103 B = 0.002441 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.506694 B =11468.028397 C =11953.165329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.159 3.841 3 H 0.009 0.991 4 C -0.118 4.118 5 C 0.162 3.838 6 H 0.059 0.941 7 N -0.695 5.695 8 C 0.555 3.445 9 O -0.563 6.563 10 C -0.092 4.092 11 C -0.119 4.119 12 C 0.127 3.873 13 N -0.475 5.475 14 C 0.102 3.898 15 C -0.105 4.105 16 C -0.094 4.094 17 C -0.115 4.115 18 C -0.132 4.132 19 C -0.087 4.087 20 C -0.130 4.130 21 C 0.187 3.813 22 N -0.601 5.601 23 C -0.251 4.251 24 H 0.077 0.923 25 C -0.052 4.052 26 N -0.939 5.939 27 Si 0.962 3.038 28 H -0.285 1.285 29 H -0.299 1.299 30 H -0.265 1.265 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.416 0.584 37 H 0.179 0.821 38 H 0.208 0.792 39 H 0.154 0.846 40 H 0.165 0.835 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.044 0.956 44 H 0.065 0.935 45 H -0.012 1.012 46 H 0.046 0.954 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.170 -5.577 23.667 25.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.053 3.947 3 H 0.027 0.973 4 C -0.157 4.157 5 C 0.058 3.942 6 H 0.078 0.922 7 N -0.347 5.347 8 C 0.343 3.657 9 O -0.443 6.443 10 C -0.103 4.103 11 C -0.140 4.140 12 C -0.046 4.046 13 N -0.183 5.183 14 C -0.019 4.019 15 C -0.124 4.124 16 C -0.113 4.113 17 C -0.133 4.133 18 C -0.150 4.150 19 C -0.090 4.090 20 C -0.171 4.171 21 C 0.061 3.939 22 N -0.325 5.325 23 C -0.381 4.381 24 H 0.095 0.905 25 C -0.247 4.247 26 N -0.585 5.585 27 Si 0.790 3.210 28 H -0.212 1.212 29 H -0.226 1.226 30 H -0.190 1.190 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.254 0.746 37 H 0.196 0.804 38 H 0.224 0.776 39 H 0.172 0.828 40 H 0.182 0.818 41 H 0.165 0.835 42 H 0.163 0.837 43 H 0.063 0.937 44 H 0.084 0.916 45 H 0.006 0.994 46 H 0.064 0.936 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.100 -5.391 23.816 25.430 hybrid contribution -0.596 0.147 -2.165 2.251 sum 6.504 -5.244 21.651 23.207 Atomic orbital electron populations 1.21692 0.93825 1.01758 1.01037 1.20645 0.94747 0.92815 0.86500 0.97322 1.22200 0.92046 1.02564 0.98925 1.20733 0.95253 0.95286 0.82920 0.92242 1.45909 1.12615 1.48095 1.28036 1.18425 0.82245 0.80996 0.84066 1.90613 1.56584 1.39040 1.58090 1.20365 0.95179 0.99066 0.95720 1.22863 1.01498 0.94042 0.95556 1.23629 0.91331 0.97160 0.92439 1.67866 1.05840 1.13420 1.31196 1.19178 0.96090 0.94354 0.92312 1.21108 0.91407 0.98723 1.01131 1.21347 1.00981 0.94513 0.94462 1.21421 0.95787 0.99813 0.96236 1.22023 0.94814 0.97097 1.01086 1.18888 0.94537 0.98763 0.96789 1.22313 0.99063 0.99734 0.95952 1.20357 0.83979 0.95212 0.94387 1.44367 1.02430 1.65591 1.20153 1.19447 0.97524 1.35290 0.85826 0.90541 1.25995 0.99170 1.00087 0.99491 1.70185 1.27867 1.44266 1.16174 0.85362 0.77838 0.78910 0.78858 1.21211 1.22604 1.18987 0.92468 0.90495 0.94334 0.90129 0.89106 0.74598 0.80396 0.77577 0.82790 0.81763 0.83514 0.83702 0.93725 0.91609 0.99386 0.93568 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 7.99 71.98 0.57 -3.62 16 2 C 0.16 6.12 3.50 44.97 0.16 6.27 16 3 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 4 C -0.12 -3.39 4.84 30.67 0.15 -3.24 16 5 C 0.16 5.22 2.42 45.02 0.11 5.32 16 6 H 0.06 2.26 7.57 -2.39 -0.02 2.24 16 7 N -0.70 -17.09 5.03 -445.24 -2.24 -19.33 16 8 C 0.55 16.04 7.72 86.80 0.67 16.71 16 9 O -0.56 -20.85 13.19 -3.85 -0.05 -20.90 16 10 C -0.09 -2.22 5.94 -19.68 -0.12 -2.34 16 11 C -0.12 -1.84 9.60 22.67 0.22 -1.63 16 12 C 0.13 1.86 11.14 85.07 0.95 2.81 16 13 N -0.47 -9.92 10.30 -188.73 -1.94 -11.86 16 14 C 0.10 2.39 6.61 40.34 0.27 2.65 16 15 C -0.11 -1.98 9.99 22.37 0.22 -1.75 16 16 C -0.09 -1.52 9.94 22.03 0.22 -1.30 16 17 C -0.11 -2.33 9.96 22.07 0.22 -2.11 16 18 C -0.13 -3.57 9.25 22.26 0.21 -3.37 16 19 C -0.09 -2.30 5.76 -21.09 -0.12 -2.42 16 20 C -0.13 -5.02 5.65 30.67 0.17 -4.85 16 21 C 0.19 9.21 5.26 86.36 0.45 9.67 16 22 N -0.60 -29.03 2.96 -675.22 -2.00 -31.03 16 23 C -0.25 -13.13 8.43 84.04 0.71 -12.42 16 24 H 0.08 3.80 6.39 -2.91 -0.02 3.78 16 25 C -0.05 -2.88 4.94 84.86 0.42 -2.46 16 26 N -0.94 -56.34 11.49 21.65 0.25 -56.10 16 27 Si 0.96 44.34 29.58 68.60 2.03 46.37 16 28 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 29 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 30 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 31 H 0.06 1.86 7.42 -2.39 -0.02 1.85 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.04 1.46 7.66 -2.39 -0.02 1.45 16 34 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.42 6.76 6.77 -92.71 -0.63 6.14 16 37 H 0.18 1.33 6.55 -2.91 -0.02 1.31 16 38 H 0.21 1.18 8.06 -2.91 -0.02 1.15 16 39 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 40 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 41 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 42 H 0.15 4.63 4.98 -2.91 -0.01 4.62 16 43 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 45 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 46 H 0.05 2.57 6.45 -2.38 -0.02 2.55 16 47 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -74.70 374.10 1.89 -72.81 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.37 Total: 18.13 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: 5.47 Total: 1.91 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -5.93 Total: -118.31 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.05 Total: -20.90 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -74.70 1.89 -72.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947516810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.126 kcal (2) G-P(sol) polarization free energy of solvation -74.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds