Wall clock time and date at job start Tue Mar 31 2020 22:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.70636 * 2 1 4 4 C 1.53197 * 109.58770 * 239.64132 * 2 1 3 5 5 C 1.53039 * 109.31259 * 294.85499 * 4 2 1 6 6 H 1.09001 * 109.46373 * 58.63380 * 5 4 2 7 7 N 1.46502 * 109.45807 * 178.61279 * 5 4 2 8 8 C 1.34771 * 119.99793 * 204.99822 * 7 5 4 9 9 O 1.21546 * 120.00405 * 359.97438 * 8 7 5 10 10 C 1.47907 * 119.99918 * 179.97438 * 8 7 5 11 11 C 1.38887 * 121.11158 * 5.65467 * 10 8 7 12 12 C 1.39278 * 119.57337 * 180.02562 * 11 10 8 13 13 N 1.30997 * 121.88897 * 359.97438 * 12 11 10 14 14 C 1.33532 * 121.82545 * 0.02562 * 13 12 11 15 15 C 1.40717 * 120.98046 * 180.02562 * 14 13 12 16 16 C 1.36054 * 119.74554 * 179.97438 * 15 14 13 17 17 C 1.39352 * 121.05573 * 0.02562 * 16 15 14 18 18 C 1.36249 * 120.83760 * 359.97438 * 17 16 15 19 19 C 1.40107 * 119.64126 * 0.02562 * 18 17 16 20 20 C 1.53040 * 109.53454 * 298.62996 * 5 4 2 21 21 C 1.53192 * 109.31293 * 61.37128 * 20 5 4 22 22 N 1.46922 * 108.77226 * 305.36137 * 21 20 5 23 23 C 1.36942 * 120.63022 * 233.59224 * 22 21 20 24 24 H 1.08000 * 120.00505 * 146.87887 * 23 22 21 25 25 C 1.38823 * 119.99683 * 326.86860 * 23 22 21 26 26 N 1.31618 * 119.99957 * 344.51404 * 25 23 22 27 27 Si 1.86800 * 119.99626 * 164.51261 * 25 23 22 28 28 H 1.48494 * 109.47094 * 60.00293 * 27 25 23 29 29 H 1.48503 * 109.46780 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.47064 * 299.99955 * 27 25 23 31 31 H 1.08996 * 109.47250 * 180.35283 * 1 2 3 32 32 H 1.09000 * 109.47252 * 300.35771 * 1 2 3 33 33 H 1.08997 * 109.47051 * 60.35453 * 1 2 3 34 34 H 1.08992 * 109.49582 * 174.89993 * 4 2 1 35 35 H 1.09004 * 109.49148 * 54.80221 * 4 2 1 36 36 H 0.96993 * 119.99838 * 24.99192 * 7 5 4 37 37 H 1.07995 * 120.21503 * 359.97438 * 11 10 8 38 38 H 1.08003 * 119.05447 * 179.97438 * 12 11 10 39 39 H 1.08003 * 120.12721 * 0.02562 * 15 14 13 40 40 H 1.07996 * 119.47739 * 180.27261 * 16 15 14 41 41 H 1.08001 * 119.58450 * 180.02562 * 17 16 15 42 42 H 1.07996 * 120.18057 * 179.97438 * 18 17 16 43 43 H 1.09007 * 109.49561 * 181.31819 * 20 5 4 44 44 H 1.09002 * 109.50185 * 301.41513 * 20 5 4 45 45 H 1.09008 * 109.58535 * 185.57650 * 21 20 5 46 46 H 1.08990 * 109.70359 * 65.22135 * 21 20 5 47 47 H 0.96997 * 119.99785 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 -1.2454 5 6 1.6413 -2.2041 -1.1701 6 1 0.5564 -2.2815 -1.0990 7 7 2.1022 -2.8978 -2.3754 8 6 1.4749 -4.0160 -2.7908 9 8 0.5270 -4.4491 -2.1652 10 6 1.9398 -4.7160 -4.0079 11 6 3.0888 -4.3104 -4.6744 12 6 3.4972 -4.9925 -5.8180 13 7 2.8274 -6.0143 -6.2905 14 6 1.7144 -6.4595 -5.7022 15 6 1.0090 -7.5593 -6.2248 16 6 -0.1220 -7.9923 -5.6047 17 6 -0.5977 -7.3632 -4.4559 18 6 0.0588 -6.2957 -3.9214 19 6 1.2269 -5.8230 -4.5339 20 6 2.2799 -2.8464 0.0635 21 6 1.7690 -2.1410 1.3237 22 7 2.0224 -0.6996 1.1945 23 6 2.7044 -0.0210 2.1690 24 1 3.3400 0.8110 1.9037 25 6 2.5787 -0.4023 3.4978 26 7 1.5945 -1.1956 3.8645 27 14 3.8062 0.2106 4.7655 28 1 3.7696 1.6943 4.8130 29 1 3.4542 -0.3368 6.1003 30 1 5.1710 -0.2392 4.3908 31 1 -0.3633 -1.0276 0.0063 32 1 -0.3634 0.5194 0.8868 33 1 -0.3633 0.5083 -0.8931 34 1 3.1297 -0.6505 -1.2912 35 1 1.6075 -0.2785 -2.1368 36 1 2.8588 -2.5523 -2.8744 37 1 3.6615 -3.4710 -4.3087 38 1 4.3917 -4.6696 -6.3299 39 1 1.3646 -8.0583 -7.1142 40 1 -0.6574 -8.8395 -6.0070 41 1 -1.4978 -7.7270 -3.9827 42 1 -0.3196 -5.8159 -3.0309 43 1 2.0121 -3.9023 0.1037 44 1 3.3639 -2.7475 0.0053 45 1 2.2943 -2.5276 2.1972 46 1 0.6988 -2.3154 1.4342 47 1 1.5069 -1.4623 4.7930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947516811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:05 Heat of formation + Delta-G solvation = 43.526717 kcal Electronic energy + Delta-G solvation = -29091.520112 eV Core-core repulsion = 25239.639801 eV Total energy + Delta-G solvation = -3851.880311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.30334 -39.61955 -37.80315 -37.32033 -34.68455 -33.67854 -32.54940 -31.03288 -30.75737 -30.26880 -29.37273 -26.99715 -25.39282 -24.27078 -23.79476 -23.04733 -21.99456 -21.62103 -20.66542 -18.76388 -18.20841 -17.70826 -17.56308 -16.67651 -16.05044 -15.63604 -15.16466 -15.00549 -14.88503 -14.54798 -14.28573 -14.12233 -13.85660 -13.79744 -13.51593 -13.36956 -13.04847 -12.68582 -12.53573 -12.24846 -12.02330 -11.84537 -11.60463 -11.43634 -11.12484 -10.98644 -10.83854 -10.70563 -10.66031 -10.42351 -10.39153 -10.24864 -10.03044 -9.79954 -9.54792 -9.29983 -9.05491 -8.87027 -8.49649 -8.43342 -6.65212 -5.82324 -3.30160 -0.12679 0.53885 1.52823 2.58342 3.03198 3.03575 3.35876 3.42137 3.42509 3.91263 3.97820 4.32515 4.39247 4.45557 4.49125 4.61208 4.85370 4.97146 5.09552 5.19564 5.28266 5.33121 5.35619 5.40119 5.52234 5.53195 5.71539 5.78028 5.86844 5.96286 6.01573 6.08813 6.16690 6.24559 6.28382 6.32967 6.38102 6.42639 6.53612 6.59130 6.65625 6.72968 6.80237 6.91745 7.13324 7.30429 7.48473 7.57899 7.61619 7.78005 8.15790 8.45332 9.18454 9.80187 10.40088 11.25892 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021118 B = 0.002466 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.552541 B =11351.937538 C =11648.836660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.171 3.829 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.149 3.851 6 H 0.089 0.911 7 N -0.711 5.711 8 C 0.555 3.445 9 O -0.524 6.524 10 C -0.064 4.064 11 C -0.143 4.143 12 C 0.126 3.874 13 N -0.461 5.461 14 C 0.123 3.877 15 C -0.102 4.102 16 C -0.097 4.097 17 C -0.121 4.121 18 C -0.098 4.098 19 C -0.067 4.067 20 C -0.147 4.147 21 C 0.178 3.822 22 N -0.583 5.583 23 C -0.260 4.260 24 H 0.063 0.937 25 C 0.010 3.990 26 N -0.897 5.897 27 Si 0.901 3.099 28 H -0.282 1.282 29 H -0.291 1.291 30 H -0.283 1.283 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.035 0.965 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.395 0.605 37 H 0.143 0.857 38 H 0.166 0.834 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.171 0.829 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.024 0.976 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.371 -8.670 -20.186 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.062 3.938 3 H 0.085 0.915 4 C -0.173 4.173 5 C 0.046 3.954 6 H 0.107 0.893 7 N -0.361 5.361 8 C 0.342 3.658 9 O -0.402 6.402 10 C -0.075 4.075 11 C -0.163 4.163 12 C -0.046 4.046 13 N -0.170 5.170 14 C 0.002 3.998 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.139 4.139 18 C -0.116 4.116 19 C -0.070 4.070 20 C -0.188 4.188 21 C 0.051 3.949 22 N -0.305 5.305 23 C -0.390 4.390 24 H 0.080 0.920 25 C -0.190 4.190 26 N -0.540 5.540 27 Si 0.731 3.269 28 H -0.208 1.208 29 H -0.216 1.216 30 H -0.210 1.210 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.230 0.770 37 H 0.161 0.839 38 H 0.183 0.817 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.188 0.812 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.098 0.902 46 H 0.042 0.958 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.142 -9.511 -20.258 22.380 hybrid contribution 0.800 0.833 1.178 1.650 sum 0.658 -8.678 -19.080 20.971 Atomic orbital electron populations 1.22297 0.98655 1.01113 1.00079 1.20452 0.91787 0.95135 0.86404 0.91538 1.22324 1.01237 0.93891 0.99856 1.21210 1.00064 0.91431 0.82691 0.89295 1.46293 1.34231 1.26406 1.29144 1.18041 0.83069 0.81014 0.83722 1.90606 1.27797 1.65104 1.56687 1.20505 0.95609 0.95779 0.95651 1.22447 0.96332 1.00988 0.96568 1.22898 0.98380 0.90609 0.92755 1.67796 1.05961 1.12350 1.30893 1.18890 0.92594 0.96118 0.92227 1.20762 0.95174 0.95475 1.00631 1.21003 0.95778 0.99470 0.95396 1.21130 1.00425 0.96248 0.96053 1.22140 0.93002 0.95685 1.00750 1.18703 0.96763 0.95486 0.96029 1.22586 1.00244 0.99191 0.96758 1.20648 0.97737 0.83099 0.93374 1.44086 1.63831 1.03176 1.19366 1.19051 1.19604 1.14592 0.85719 0.91969 1.25189 0.96887 0.99706 0.97212 1.70012 1.29226 1.38127 1.16605 0.86407 0.81226 0.78555 0.80736 1.20809 1.21646 1.20982 0.93242 0.92519 0.94558 0.91804 0.92499 0.76995 0.83944 0.81739 0.84682 0.85272 0.85292 0.81201 0.92840 0.92556 0.90162 0.95815 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.02 37.16 0.34 -2.69 16 2 C 0.17 3.31 3.29 -67.60 -0.22 3.09 16 3 H 0.07 1.30 7.93 -51.93 -0.41 0.88 16 4 C -0.13 -2.08 5.02 -26.61 -0.13 -2.22 16 5 C 0.15 2.42 2.21 -67.89 -0.15 2.27 16 6 H 0.09 1.63 5.94 -51.93 -0.31 1.32 16 7 N -0.71 -9.35 5.03 -54.69 -0.28 -9.63 16 8 C 0.56 8.03 7.72 -12.30 -0.09 7.94 16 9 O -0.52 -9.16 13.19 5.32 0.07 -9.09 16 10 C -0.06 -0.80 5.94 -104.34 -0.62 -1.42 16 11 C -0.14 -1.33 9.60 -38.95 -0.37 -1.71 16 12 C 0.13 1.15 11.14 -17.52 -0.20 0.95 16 13 N -0.46 -5.37 10.30 -11.00 -0.11 -5.48 16 14 C 0.12 1.52 6.61 -84.87 -0.56 0.96 16 15 C -0.10 -1.04 9.98 -39.43 -0.39 -1.43 16 16 C -0.10 -0.87 9.94 -39.95 -0.40 -1.27 16 17 C -0.12 -1.24 9.96 -39.88 -0.40 -1.63 16 18 C -0.10 -1.26 9.25 -39.60 -0.37 -1.63 16 19 C -0.07 -0.88 5.76 -106.52 -0.61 -1.50 16 20 C -0.15 -2.79 5.65 -26.61 -0.15 -2.94 16 21 C 0.18 4.13 4.85 -3.71 -0.02 4.11 16 22 N -0.58 -13.78 2.67 -164.77 -0.44 -14.22 16 23 C -0.26 -6.85 9.53 -15.05 -0.14 -6.99 16 24 H 0.06 1.61 7.88 -52.49 -0.41 1.20 16 25 C 0.01 0.27 4.91 -17.43 -0.09 0.18 16 26 N -0.90 -25.56 11.49 55.49 0.64 -24.92 16 27 Si 0.90 21.22 29.58 -169.99 -5.03 16.19 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 30 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 31 H 0.05 0.96 5.72 -51.93 -0.30 0.66 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.40 3.96 6.77 -40.82 -0.28 3.68 16 37 H 0.14 0.89 6.55 -52.49 -0.34 0.55 16 38 H 0.17 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 40 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.17 2.46 4.98 -52.49 -0.26 2.20 16 43 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.08 2.10 6.41 -51.92 -0.33 1.77 16 46 H 0.02 0.59 7.49 -51.93 -0.39 0.20 16 47 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 373.03 15.07 5.62 5.62 Total: -1.00 -31.49 373.03 -10.51 -41.99 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -6.40 Total: 5.46 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -4.58 Total: -5.93 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.19 Total: -54.25 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.07 Total: -9.09 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.49 -10.51 -41.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947516811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.519 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds