Wall clock time and date at job start Tue Mar 31 2020 22:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.70636 * 2 1 4 4 C 1.53197 * 109.58770 * 239.64132 * 2 1 3 5 5 C 1.53039 * 109.31259 * 294.85499 * 4 2 1 6 6 H 1.09001 * 109.46373 * 58.63380 * 5 4 2 7 7 N 1.46502 * 109.45807 * 178.61279 * 5 4 2 8 8 C 1.34771 * 119.99793 * 204.99822 * 7 5 4 9 9 O 1.21546 * 120.00405 * 359.97438 * 8 7 5 10 10 C 1.47907 * 119.99918 * 179.97438 * 8 7 5 11 11 C 1.38887 * 121.11158 * 5.65467 * 10 8 7 12 12 C 1.39278 * 119.57337 * 180.02562 * 11 10 8 13 13 N 1.30997 * 121.88897 * 359.97438 * 12 11 10 14 14 C 1.33532 * 121.82545 * 0.02562 * 13 12 11 15 15 C 1.40717 * 120.98046 * 180.02562 * 14 13 12 16 16 C 1.36054 * 119.74554 * 179.97438 * 15 14 13 17 17 C 1.39352 * 121.05573 * 0.02562 * 16 15 14 18 18 C 1.36249 * 120.83760 * 359.97438 * 17 16 15 19 19 C 1.40107 * 119.64126 * 0.02562 * 18 17 16 20 20 C 1.53040 * 109.53454 * 298.62996 * 5 4 2 21 21 C 1.53192 * 109.31293 * 61.37128 * 20 5 4 22 22 N 1.46922 * 108.77226 * 305.36137 * 21 20 5 23 23 C 1.36942 * 120.63022 * 233.59224 * 22 21 20 24 24 H 1.08000 * 120.00505 * 146.87887 * 23 22 21 25 25 C 1.38823 * 119.99683 * 326.86860 * 23 22 21 26 26 N 1.31618 * 119.99957 * 344.51404 * 25 23 22 27 27 Si 1.86800 * 119.99626 * 164.51261 * 25 23 22 28 28 H 1.48494 * 109.47094 * 60.00293 * 27 25 23 29 29 H 1.48503 * 109.46780 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.47064 * 299.99955 * 27 25 23 31 31 H 1.08996 * 109.47250 * 180.35283 * 1 2 3 32 32 H 1.09000 * 109.47252 * 300.35771 * 1 2 3 33 33 H 1.08997 * 109.47051 * 60.35453 * 1 2 3 34 34 H 1.08992 * 109.49582 * 174.89993 * 4 2 1 35 35 H 1.09004 * 109.49148 * 54.80221 * 4 2 1 36 36 H 0.96993 * 119.99838 * 24.99192 * 7 5 4 37 37 H 1.07995 * 120.21503 * 359.97438 * 11 10 8 38 38 H 1.08003 * 119.05447 * 179.97438 * 12 11 10 39 39 H 1.08003 * 120.12721 * 0.02562 * 15 14 13 40 40 H 1.07996 * 119.47739 * 180.27261 * 16 15 14 41 41 H 1.08001 * 119.58450 * 180.02562 * 17 16 15 42 42 H 1.07996 * 120.18057 * 179.97438 * 18 17 16 43 43 H 1.09007 * 109.49561 * 181.31819 * 20 5 4 44 44 H 1.09002 * 109.50185 * 301.41513 * 20 5 4 45 45 H 1.09008 * 109.58535 * 185.57650 * 21 20 5 46 46 H 1.08990 * 109.70359 * 65.22135 * 21 20 5 47 47 H 0.96997 * 119.99785 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 -1.2454 5 6 1.6413 -2.2041 -1.1701 6 1 0.5564 -2.2815 -1.0990 7 7 2.1022 -2.8978 -2.3754 8 6 1.4749 -4.0160 -2.7908 9 8 0.5270 -4.4491 -2.1652 10 6 1.9398 -4.7160 -4.0079 11 6 3.0888 -4.3104 -4.6744 12 6 3.4972 -4.9925 -5.8180 13 7 2.8274 -6.0143 -6.2905 14 6 1.7144 -6.4595 -5.7022 15 6 1.0090 -7.5593 -6.2248 16 6 -0.1220 -7.9923 -5.6047 17 6 -0.5977 -7.3632 -4.4559 18 6 0.0588 -6.2957 -3.9214 19 6 1.2269 -5.8230 -4.5339 20 6 2.2799 -2.8464 0.0635 21 6 1.7690 -2.1410 1.3237 22 7 2.0224 -0.6996 1.1945 23 6 2.7044 -0.0210 2.1690 24 1 3.3400 0.8110 1.9037 25 6 2.5787 -0.4023 3.4978 26 7 1.5945 -1.1956 3.8645 27 14 3.8062 0.2106 4.7655 28 1 3.7696 1.6943 4.8130 29 1 3.4542 -0.3368 6.1003 30 1 5.1710 -0.2392 4.3908 31 1 -0.3633 -1.0276 0.0063 32 1 -0.3634 0.5194 0.8868 33 1 -0.3633 0.5083 -0.8931 34 1 3.1297 -0.6505 -1.2912 35 1 1.6075 -0.2785 -2.1368 36 1 2.8588 -2.5523 -2.8744 37 1 3.6615 -3.4710 -4.3087 38 1 4.3917 -4.6696 -6.3299 39 1 1.3646 -8.0583 -7.1142 40 1 -0.6574 -8.8395 -6.0070 41 1 -1.4978 -7.7270 -3.9827 42 1 -0.3196 -5.8159 -3.0309 43 1 2.0121 -3.9023 0.1037 44 1 3.3639 -2.7475 0.0053 45 1 2.2943 -2.5276 2.1972 46 1 0.6988 -2.3154 1.4342 47 1 1.5069 -1.4623 4.7930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947516811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:04 Heat of formation + Delta-G solvation = 24.531481 kcal Electronic energy + Delta-G solvation = -29092.343807 eV Core-core repulsion = 25239.639801 eV Total energy + Delta-G solvation = -3852.704007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.18088 -40.78357 -39.28365 -38.09278 -36.12772 -34.67455 -34.19411 -32.54142 -31.66979 -31.48884 -30.66709 -28.56414 -26.52173 -25.85690 -24.58318 -24.15214 -23.63240 -22.91303 -21.80719 -20.18398 -19.23606 -18.88010 -18.48498 -18.17805 -17.28953 -16.78918 -16.44171 -16.25560 -15.92931 -15.64872 -15.52853 -15.45515 -15.19114 -14.86162 -14.79618 -14.36594 -14.31735 -14.16725 -14.01178 -13.84575 -13.14007 -12.94316 -12.79838 -12.65799 -12.63721 -12.55143 -12.33728 -12.28546 -12.10400 -12.02385 -11.78259 -11.57022 -11.51880 -11.37627 -11.05601 -10.55214 -10.34831 -10.11406 -9.81485 -9.29939 -8.61246 -7.86054 -5.36418 -0.95909 -0.22882 0.66213 1.47613 1.49603 1.56044 1.73131 1.93048 2.08978 2.51661 3.08729 3.27706 3.30196 3.42537 3.62358 3.64102 3.68672 3.83234 3.86933 4.06488 4.16523 4.22197 4.28402 4.40605 4.44016 4.52254 4.54280 4.57951 4.70869 4.73366 4.76770 4.84494 4.86620 5.04741 5.07391 5.09074 5.15875 5.17883 5.34043 5.34154 5.41817 5.42896 5.49890 5.51827 5.59363 5.69310 5.74548 5.87772 6.43198 6.44303 6.80109 7.10493 7.17145 7.87184 8.42231 9.20048 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021118 B = 0.002466 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.552541 B =11351.937538 C =11648.836660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 H 0.071 0.929 4 C -0.118 4.118 5 C 0.162 3.838 6 H 0.067 0.933 7 N -0.696 5.696 8 C 0.555 3.445 9 O -0.563 6.563 10 C -0.092 4.092 11 C -0.120 4.120 12 C 0.126 3.874 13 N -0.475 5.475 14 C 0.102 3.898 15 C -0.106 4.106 16 C -0.094 4.094 17 C -0.115 4.115 18 C -0.132 4.132 19 C -0.087 4.087 20 C -0.132 4.132 21 C 0.189 3.811 22 N -0.598 5.598 23 C -0.262 4.262 24 H 0.070 0.930 25 C -0.047 4.047 26 N -0.934 5.934 27 Si 0.964 3.036 28 H -0.273 1.273 29 H -0.299 1.299 30 H -0.277 1.277 31 H 0.034 0.966 32 H 0.026 0.974 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.415 0.585 37 H 0.179 0.821 38 H 0.207 0.793 39 H 0.154 0.846 40 H 0.165 0.835 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.043 0.957 44 H 0.063 0.937 45 H 0.043 0.957 46 H -0.008 1.008 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.358 -8.200 -23.553 25.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 H 0.089 0.911 4 C -0.158 4.158 5 C 0.058 3.942 6 H 0.085 0.915 7 N -0.347 5.347 8 C 0.343 3.657 9 O -0.443 6.443 10 C -0.103 4.103 11 C -0.140 4.140 12 C -0.046 4.046 13 N -0.184 5.184 14 C -0.019 4.019 15 C -0.124 4.124 16 C -0.113 4.113 17 C -0.133 4.133 18 C -0.150 4.150 19 C -0.090 4.090 20 C -0.173 4.173 21 C 0.063 3.937 22 N -0.320 5.320 23 C -0.393 4.393 24 H 0.087 0.913 25 C -0.243 4.243 26 N -0.579 5.579 27 Si 0.792 3.208 28 H -0.199 1.199 29 H -0.226 1.226 30 H -0.203 1.203 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.253 0.747 37 H 0.196 0.804 38 H 0.224 0.776 39 H 0.172 0.828 40 H 0.182 0.818 41 H 0.165 0.835 42 H 0.164 0.836 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.061 0.939 46 H 0.010 0.990 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.869 -9.020 -23.684 25.412 hybrid contribution 0.166 0.674 2.140 2.250 sum 2.035 -8.346 -21.544 23.194 Atomic orbital electron populations 1.22186 0.98358 1.00233 1.00466 1.20713 0.92050 0.95562 0.86289 0.91116 1.22152 1.02174 0.92463 0.98965 1.20800 0.98576 0.92161 0.82706 0.91489 1.45931 1.34752 1.25963 1.28092 1.18409 0.82418 0.80837 0.84061 1.90611 1.29549 1.66088 1.58034 1.20373 0.97544 0.96664 0.95730 1.22862 0.94626 1.00962 0.95555 1.23628 0.99003 0.89473 0.92469 1.67862 1.05922 1.13334 1.31234 1.19175 0.93397 0.97043 0.92322 1.21104 0.95243 0.94919 1.01130 1.21343 0.95509 0.99977 0.94474 1.21422 1.00510 0.95113 0.96233 1.22028 0.94393 0.97498 1.01062 1.18890 0.97118 0.96209 0.96766 1.22333 1.00511 0.98244 0.96179 1.20314 0.95397 0.83855 0.94162 1.44296 1.64165 1.03338 1.20201 1.19435 1.19263 1.14197 0.86389 0.91280 1.25942 0.98565 1.00542 0.99224 1.70183 1.31250 1.40117 1.16358 0.85400 0.79201 0.78264 0.77903 1.19878 1.22594 1.20266 0.94726 0.95440 0.90775 0.90375 0.88903 0.74665 0.80415 0.77609 0.82817 0.81781 0.83512 0.83649 0.93800 0.91805 0.93879 0.98981 0.94297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.70 9.02 71.98 0.65 -5.05 16 2 C 0.16 6.07 3.29 44.98 0.15 6.22 16 3 H 0.07 2.62 7.93 -2.39 -0.02 2.60 16 4 C -0.12 -3.35 5.02 30.67 0.15 -3.20 16 5 C 0.16 5.11 2.21 45.02 0.10 5.21 16 6 H 0.07 2.48 5.94 -2.39 -0.01 2.46 16 7 N -0.70 -16.97 5.03 -445.22 -2.24 -19.21 16 8 C 0.56 15.92 7.72 86.81 0.67 16.59 16 9 O -0.56 -20.63 13.19 -3.86 -0.05 -20.68 16 10 C -0.09 -2.21 5.94 -19.68 -0.12 -2.32 16 11 C -0.12 -1.85 9.60 22.68 0.22 -1.63 16 12 C 0.13 1.86 11.14 85.07 0.95 2.81 16 13 N -0.47 -9.93 10.30 -188.72 -1.94 -11.87 16 14 C 0.10 2.38 6.61 40.35 0.27 2.65 16 15 C -0.11 -1.98 9.98 22.37 0.22 -1.76 16 16 C -0.09 -1.52 9.94 22.03 0.22 -1.30 16 17 C -0.11 -2.33 9.96 22.07 0.22 -2.11 16 18 C -0.13 -3.54 9.25 22.26 0.21 -3.34 16 19 C -0.09 -2.30 5.76 -21.09 -0.12 -2.42 16 20 C -0.13 -5.09 5.65 30.67 0.17 -4.91 16 21 C 0.19 9.22 4.85 86.36 0.42 9.64 16 22 N -0.60 -28.65 2.67 -675.22 -1.80 -30.46 16 23 C -0.26 -13.94 9.53 84.04 0.80 -13.14 16 24 H 0.07 3.52 7.88 -2.91 -0.02 3.50 16 25 C -0.05 -2.58 4.91 84.86 0.42 -2.16 16 26 N -0.93 -55.70 11.49 21.65 0.25 -55.45 16 27 Si 0.96 44.37 29.58 68.60 2.03 46.39 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 29 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 30 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 31 H 0.03 1.37 5.72 -2.39 -0.01 1.35 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.42 6.72 6.77 -92.71 -0.63 6.09 16 37 H 0.18 1.34 6.55 -2.91 -0.02 1.32 16 38 H 0.21 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 40 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 41 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 42 H 0.15 4.62 4.98 -2.91 -0.01 4.60 16 43 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 44 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.04 2.39 6.41 -2.38 -0.02 2.37 16 46 H -0.01 -0.43 7.49 -2.39 -0.02 -0.44 16 47 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -74.09 373.03 2.21 -71.88 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.38 Total: 19.64 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 5.59 Total: -0.24 kcal Atomic # 7 Polarization: -111.26 SS G_CDS: -5.74 Total: -117.00 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.05 Total: -20.68 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -74.09 2.21 -71.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947516811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.412 kcal (2) G-P(sol) polarization free energy of solvation -74.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds