Wall clock time and date at job start Tue Mar 31 2020 22:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.69813 * 2 1 4 4 C 1.52760 * 109.42832 * 120.15899 * 2 1 3 5 5 C 1.53040 * 109.38138 * 65.42387 * 4 2 1 6 6 H 1.08996 * 109.45150 * 301.22107 * 5 4 2 7 7 N 1.46504 * 109.45964 * 181.25483 * 5 4 2 8 8 C 1.34783 * 119.99765 * 154.92788 * 7 5 4 9 9 O 1.21537 * 120.00044 * 0.02562 * 8 7 5 10 10 C 1.47904 * 119.99823 * 180.02562 * 8 7 5 11 11 C 1.38898 * 121.11161 * 357.21788 * 10 8 7 12 12 C 1.39267 * 119.57921 * 179.68975 * 11 10 8 13 13 N 1.31000 * 121.88293 * 0.65150 * 12 11 10 14 14 C 1.33534 * 121.82225 * 359.64704 * 13 12 11 15 15 C 1.40715 * 120.96240 * 180.02562 * 14 13 12 16 16 C 1.36063 * 119.74271 * 179.97438 * 15 14 13 17 17 C 1.39359 * 121.04920 * 0.02562 * 16 15 14 18 18 C 1.36247 * 120.84161 * 359.97438 * 17 16 15 19 19 C 1.40102 * 119.64238 * 0.02562 * 18 17 16 20 20 C 1.53039 * 109.53871 * 61.23815 * 5 4 2 21 21 C 1.53187 * 109.31268 * 298.63696 * 20 5 4 22 22 N 1.46918 * 109.58390 * 239.63919 * 2 1 3 23 23 C 1.36943 * 120.62791 * 113.84820 * 22 2 1 24 24 H 1.08004 * 119.99801 * 29.17731 * 23 22 2 25 25 C 1.38812 * 119.99849 * 209.17082 * 23 22 2 26 26 N 1.31615 * 120.00047 * 24.03872 * 25 23 22 27 27 Si 1.86804 * 120.00011 * 204.03586 * 25 23 22 28 28 H 1.48497 * 109.46863 * 180.02562 * 27 25 23 29 29 H 1.48503 * 109.47005 * 300.00588 * 27 25 23 30 30 H 1.48497 * 109.46936 * 60.00348 * 27 25 23 31 31 H 1.08992 * 109.47526 * 180.36083 * 1 2 3 32 32 H 1.09003 * 109.46930 * 300.36046 * 1 2 3 33 33 H 1.08999 * 109.46981 * 60.35803 * 1 2 3 34 34 H 1.09005 * 109.56816 * 305.38937 * 4 2 1 35 35 H 1.09001 * 109.35723 * 185.33146 * 4 2 1 36 36 H 0.96996 * 120.00047 * 334.93508 * 7 5 4 37 37 H 1.08005 * 120.21039 * 0.02562 * 11 10 8 38 38 H 1.07999 * 119.06148 * 180.27548 * 12 11 10 39 39 H 1.07997 * 120.13458 * 359.96030 * 15 14 13 40 40 H 1.07994 * 119.47701 * 179.97438 * 16 15 14 41 41 H 1.08001 * 119.57687 * 180.02562 * 17 16 15 42 42 H 1.07998 * 120.17591 * 180.02562 * 18 17 16 43 43 H 1.08999 * 109.49955 * 178.67732 * 20 5 4 44 44 H 1.09008 * 109.49785 * 58.58719 * 20 5 4 45 45 H 1.09005 * 109.58317 * 294.84130 * 21 20 5 46 46 H 1.09003 * 109.70679 * 174.49523 * 21 20 5 47 47 H 0.97003 * 119.99991 * 5.87358 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0382 -0.7238 1.2456 5 6 1.6409 -2.1999 1.1728 6 1 0.5564 -2.2807 1.0997 7 7 2.1013 -2.8894 2.3807 8 6 1.4757 -4.0079 2.7980 9 8 0.5298 -4.4447 2.1721 10 6 1.9401 -4.7037 4.0178 11 6 3.0534 -4.2577 4.7185 12 6 3.4589 -4.9333 5.8668 13 7 2.8266 -5.9933 6.3056 14 6 1.7527 -6.4819 5.6801 15 6 1.0869 -7.6216 6.1677 16 6 -0.0053 -8.0979 5.5109 17 6 -0.4789 -7.4750 4.3577 18 6 0.1401 -6.3697 3.8564 19 6 1.2676 -5.8519 4.5072 20 6 2.2842 -2.8430 -0.0579 21 6 1.7741 -2.1421 -1.3208 22 7 2.0225 -0.6996 -1.1944 23 6 2.7052 -0.0212 -2.1685 24 1 3.2903 0.8494 -1.9112 25 6 2.6454 -0.4525 -3.4865 26 7 1.6211 -1.1690 -3.8986 27 14 4.0185 -0.0160 -4.6754 28 1 3.7181 -0.5911 -6.0112 29 1 4.1269 1.4610 -4.7857 30 1 5.3018 -0.5704 -4.1745 31 1 -0.3634 -1.0275 0.0065 32 1 -0.3633 0.5194 0.8868 33 1 -0.3633 0.5083 -0.8932 34 1 1.5987 -0.2722 2.1350 35 1 3.1240 -0.6412 1.2937 36 1 2.8563 -2.5409 2.8800 37 1 3.5979 -3.3893 4.3780 38 1 4.3230 -4.5767 6.4077 39 1 1.4414 -8.1164 7.0598 40 1 -0.5128 -8.9732 5.8887 41 1 -1.3483 -7.8731 3.8555 42 1 -0.2363 -5.8953 2.9623 43 1 2.0200 -3.8998 -0.0962 44 1 3.3678 -2.7405 0.0026 45 1 0.7043 -2.3204 -1.4308 46 1 2.3004 -2.5285 -2.1937 47 1 0.8682 -1.3238 -3.3070 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947516812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:08 Heat of formation + Delta-G solvation = 22.676818 kcal Electronic energy + Delta-G solvation = -29154.204804 eV Core-core repulsion = 25301.420373 eV Total energy + Delta-G solvation = -3852.784431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.21966 -40.87807 -39.46850 -38.11813 -36.33055 -34.77645 -34.31896 -32.66025 -31.61796 -31.44914 -30.62745 -28.65457 -26.52315 -25.83438 -24.60738 -24.17119 -23.66126 -23.01901 -21.86995 -20.33932 -19.52856 -19.05993 -18.55986 -18.35371 -17.31868 -16.72125 -16.39709 -16.18207 -15.92833 -15.76307 -15.60067 -15.43388 -15.23692 -15.12760 -14.87665 -14.70400 -14.43468 -14.17641 -14.02517 -13.84357 -13.46880 -12.82117 -12.81687 -12.70371 -12.64339 -12.47915 -12.35305 -12.34187 -11.99120 -11.94107 -11.80115 -11.59195 -11.50333 -11.43376 -11.09529 -10.47223 -10.38165 -10.20454 -9.83858 -9.32478 -8.92391 -8.22080 -5.39621 -0.99080 -0.25290 0.63383 1.59010 1.66194 1.69521 1.84506 1.86581 2.05915 2.66518 3.06262 3.23862 3.25343 3.36369 3.49598 3.59484 3.65716 3.73045 3.83571 3.92895 4.13506 4.17246 4.20337 4.27658 4.37471 4.38592 4.51707 4.54042 4.54480 4.59962 4.70564 4.72402 4.76232 4.95863 4.96574 5.02567 5.04082 5.10490 5.15846 5.21424 5.25274 5.31848 5.37071 5.47146 5.52443 5.56314 5.85476 5.89348 6.37067 6.41540 6.77659 7.04413 7.08499 7.79424 8.25448 9.03083 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020323 B = 0.002494 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.413793 B =11224.400490 C =11482.139951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.118 4.118 5 C 0.163 3.837 6 H 0.070 0.930 7 N -0.697 5.697 8 C 0.556 3.444 9 O -0.562 6.562 10 C -0.093 4.093 11 C -0.119 4.119 12 C 0.126 3.874 13 N -0.474 5.474 14 C 0.102 3.898 15 C -0.105 4.105 16 C -0.094 4.094 17 C -0.114 4.114 18 C -0.132 4.132 19 C -0.087 4.087 20 C -0.129 4.129 21 C 0.165 3.835 22 N -0.606 5.606 23 C -0.349 4.349 24 H 0.056 0.944 25 C -0.078 4.078 26 N -0.946 5.946 27 Si 1.113 2.887 28 H -0.297 1.297 29 H -0.274 1.274 30 H -0.279 1.279 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.026 0.974 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.415 0.585 37 H 0.178 0.822 38 H 0.208 0.792 39 H 0.154 0.846 40 H 0.165 0.835 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.048 0.952 44 H 0.064 0.936 45 H -0.002 1.002 46 H 0.042 0.958 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.410 -8.244 24.091 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.056 3.944 3 H 0.085 0.915 4 C -0.158 4.158 5 C 0.058 3.942 6 H 0.088 0.912 7 N -0.348 5.348 8 C 0.344 3.656 9 O -0.442 6.442 10 C -0.104 4.104 11 C -0.140 4.140 12 C -0.046 4.046 13 N -0.183 5.183 14 C -0.019 4.019 15 C -0.124 4.124 16 C -0.113 4.113 17 C -0.132 4.132 18 C -0.151 4.151 19 C -0.090 4.090 20 C -0.169 4.169 21 C 0.039 3.961 22 N -0.330 5.330 23 C -0.479 4.479 24 H 0.074 0.926 25 C -0.274 4.274 26 N -0.588 5.588 27 Si 0.938 3.062 28 H -0.224 1.224 29 H -0.200 1.200 30 H -0.205 1.205 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.045 0.955 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.254 0.746 37 H 0.196 0.804 38 H 0.224 0.776 39 H 0.172 0.828 40 H 0.182 0.818 41 H 0.165 0.835 42 H 0.164 0.836 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.016 0.984 46 H 0.060 0.940 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.536 -9.222 22.840 24.762 hybrid contribution -0.974 0.759 0.248 1.259 sum 1.562 -8.463 23.088 24.640 Atomic orbital electron populations 1.22227 0.98103 1.00459 1.00750 1.20606 0.92173 0.95462 0.86207 0.91477 1.22068 1.02187 0.92594 0.98915 1.20767 0.98627 0.92064 0.82694 0.91240 1.45906 1.34997 1.26055 1.27833 1.18412 0.82355 0.80740 0.84097 1.90602 1.29642 1.65790 1.58147 1.20354 0.97889 0.96375 0.95781 1.22863 0.94547 1.01236 0.95311 1.23628 0.98627 0.89472 0.92869 1.67868 1.06534 1.12596 1.31271 1.19179 0.93777 0.96918 0.92072 1.21111 0.95703 0.94354 1.01195 1.21353 0.95492 1.00238 0.94216 1.21430 1.00364 0.94975 0.96461 1.22038 0.94733 0.97190 1.01106 1.18887 0.97490 0.95810 0.96769 1.22243 1.00605 0.98339 0.95699 1.20608 0.95547 0.84441 0.95517 1.44387 1.64961 1.02797 1.20810 1.20214 1.24628 1.13968 0.89102 0.92617 1.27176 1.02617 0.99705 0.97890 1.70896 1.06279 1.43626 1.38017 0.82880 0.73221 0.76382 0.73727 1.22362 1.19996 1.20504 0.94373 0.90422 0.95455 0.88650 0.90572 0.74627 0.80443 0.77590 0.82789 0.81755 0.83497 0.83601 0.93369 0.91757 0.98395 0.93987 0.93683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.68 9.02 71.98 0.65 -5.03 16 2 C 0.16 6.14 3.27 44.83 0.15 6.29 16 3 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 4 C -0.12 -3.36 4.99 30.53 0.15 -3.21 16 5 C 0.16 5.07 2.21 45.02 0.10 5.17 16 6 H 0.07 2.50 5.93 -2.39 -0.01 2.49 16 7 N -0.70 -16.74 5.03 -445.22 -2.24 -18.98 16 8 C 0.56 15.70 7.73 86.80 0.67 16.38 16 9 O -0.56 -20.23 13.16 -3.83 -0.05 -20.28 16 10 C -0.09 -2.20 5.94 -19.68 -0.12 -2.32 16 11 C -0.12 -1.82 9.61 22.68 0.22 -1.60 16 12 C 0.13 1.83 11.14 85.06 0.95 2.78 16 13 N -0.47 -9.82 10.30 -188.73 -1.94 -11.77 16 14 C 0.10 2.36 6.61 40.34 0.27 2.63 16 15 C -0.11 -1.95 9.98 22.37 0.22 -1.73 16 16 C -0.09 -1.50 9.94 22.03 0.22 -1.28 16 17 C -0.11 -2.29 9.96 22.08 0.22 -2.07 16 18 C -0.13 -3.53 9.25 22.26 0.21 -3.32 16 19 C -0.09 -2.27 5.76 -21.10 -0.12 -2.39 16 20 C -0.13 -4.89 5.65 30.67 0.17 -4.72 16 21 C 0.17 7.92 4.29 86.36 0.37 8.29 16 22 N -0.61 -29.10 2.54 -676.04 -1.72 -30.82 16 23 C -0.35 -18.94 9.48 84.03 0.80 -18.14 16 24 H 0.06 2.97 7.94 -2.91 -0.02 2.95 16 25 C -0.08 -4.38 4.70 84.86 0.40 -3.98 16 26 N -0.95 -58.22 12.45 21.65 0.27 -57.95 16 27 Si 1.11 50.55 29.98 68.60 2.06 52.61 16 28 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 29 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 30 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 31 H 0.04 1.45 5.74 -2.39 -0.01 1.44 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.42 6.66 6.75 -92.71 -0.63 6.04 16 37 H 0.18 1.30 6.52 -2.91 -0.02 1.28 16 38 H 0.21 1.16 8.06 -2.91 -0.02 1.13 16 39 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 41 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 42 H 0.15 4.58 4.96 -2.92 -0.01 4.57 16 43 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 45 H 0.00 -0.10 7.23 -2.38 -0.02 -0.12 16 46 H 0.04 2.31 6.39 -2.39 -0.02 2.29 16 47 H 0.25 15.97 6.71 -92.71 -0.62 15.35 16 Total: -1.00 -75.78 371.51 2.42 -73.36 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.53 Total: 22.09 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 5.52 Total: -8.26 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -5.63 Total: -119.52 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.05 Total: -20.28 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 2.06 Total: 52.61 kcal Total: -75.78 2.42 -73.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947516812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.041 kcal (2) G-P(sol) polarization free energy of solvation -75.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds