Wall clock time and date at job start Tue Mar 31 2020 22:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.70131 * 2 1 4 4 C 1.53189 * 109.59179 * 239.64198 * 2 1 3 5 5 C 1.53037 * 109.31594 * 185.57586 * 4 2 1 6 6 H 1.08997 * 109.45998 * 301.34744 * 5 4 2 7 7 N 1.46493 * 109.46492 * 181.37025 * 5 4 2 8 8 C 1.34776 * 120.00296 * 154.99788 * 7 5 4 9 9 O 1.21534 * 119.99827 * 0.02562 * 8 7 5 10 10 C 1.47903 * 119.99746 * 180.02562 * 8 7 5 11 11 C 1.38891 * 121.11624 * 2.61700 * 10 8 7 12 12 C 1.39269 * 119.57730 * 179.81464 * 11 10 8 13 13 N 1.30993 * 121.88639 * 0.45321 * 12 11 10 14 14 C 1.33530 * 121.82547 * 359.78487 * 13 12 11 15 15 C 1.40715 * 120.97050 * 179.97438 * 14 13 12 16 16 C 1.36056 * 119.74258 * 180.02562 * 15 14 13 17 17 C 1.39343 * 121.05518 * 359.97438 * 16 15 14 18 18 C 1.36245 * 120.83937 * 0.02562 * 17 16 15 19 19 C 1.40103 * 119.64386 * 359.95997 * 18 17 16 20 20 C 1.53047 * 109.53742 * 61.36326 * 5 4 2 21 21 C 1.53628 * 109.24012 * 298.51375 * 20 5 4 22 22 N 1.46925 * 109.58540 * 120.34643 * 2 1 3 23 23 C 1.36936 * 120.63323 * 353.38311 * 22 2 1 24 24 H 1.07998 * 119.99872 * 33.02294 * 23 22 2 25 25 C 1.38812 * 119.99992 * 213.02435 * 23 22 2 26 26 N 1.31620 * 120.00176 * 201.89877 * 25 23 22 27 27 Si 1.86801 * 120.00146 * 21.89964 * 25 23 22 28 28 H 1.48502 * 109.47336 * 272.24097 * 27 25 23 29 29 H 1.48506 * 109.47031 * 32.23896 * 27 25 23 30 30 H 1.48504 * 109.47238 * 152.23782 * 27 25 23 31 31 H 1.09001 * 109.47400 * 299.64541 * 1 2 3 32 32 H 1.09002 * 109.46862 * 59.65073 * 1 2 3 33 33 H 1.09002 * 109.46506 * 179.64887 * 1 2 3 34 34 H 1.09004 * 109.49515 * 305.53037 * 4 2 1 35 35 H 1.08999 * 109.49447 * 65.62510 * 4 2 1 36 36 H 0.97000 * 119.99778 * 335.00223 * 7 5 4 37 37 H 1.07999 * 120.21128 * 359.97438 * 11 10 8 38 38 H 1.08005 * 119.05415 * 180.23815 * 12 11 10 39 39 H 1.08002 * 120.12816 * 0.04874 * 15 14 13 40 40 H 1.07998 * 119.47189 * 179.97438 * 16 15 14 41 41 H 1.08004 * 119.58323 * 180.02562 * 17 16 15 42 42 H 1.08001 * 120.18078 * 180.02562 * 18 17 16 43 43 H 1.09003 * 109.49527 * 58.58493 * 20 5 4 44 44 H 1.09001 * 109.49677 * 178.68427 * 20 5 4 45 45 H 1.08991 * 109.74055 * 295.11429 * 21 20 5 46 46 H 1.09000 * 109.65968 * 174.54849 * 21 20 5 47 47 H 0.96997 * 120.00136 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0437 -0.7294 -1.2453 5 6 3.5676 -0.8479 -1.1700 6 1 4.0062 0.1474 -1.0992 7 7 4.0654 -1.5160 -2.3749 8 6 5.3296 -1.3025 -2.7904 9 8 6.0568 -0.5560 -2.1651 10 6 5.8319 -1.9766 -4.0073 11 6 5.0050 -2.7918 -4.7694 12 6 5.5104 -3.4079 -5.9115 13 7 6.7544 -3.2496 -6.2902 14 6 7.6074 -2.4848 -5.6043 15 6 8.9402 -2.3278 -6.0271 16 6 9.7882 -1.5428 -5.3089 17 6 9.3589 -0.8875 -4.1565 18 6 8.0758 -1.0161 -3.7169 19 6 7.1752 -1.8163 -4.4320 20 6 3.9570 -1.6656 0.0637 21 6 3.4656 -0.9417 1.3266 22 7 2.0225 -0.6994 1.1946 23 6 1.1537 -1.1125 2.1691 24 1 0.1556 -1.4286 1.9040 25 6 1.5558 -1.1250 3.4976 26 7 0.9334 -1.8932 4.3664 27 14 2.9804 -0.0516 4.0524 28 1 4.2565 -0.7884 3.8683 29 1 3.0065 1.1934 3.2432 30 1 2.8106 0.2938 5.4867 31 1 -0.3634 0.5083 0.8931 32 1 -0.3633 0.5193 -0.8869 33 1 -0.3632 -1.0277 -0.0063 34 1 1.6031 -1.7254 -1.2912 35 1 1.7661 -0.1669 -2.1367 36 1 3.4851 -2.1120 -2.8738 37 1 3.9760 -2.9449 -4.4795 38 1 4.8589 -4.0370 -6.5001 39 1 9.2887 -2.8281 -6.9186 40 1 10.8104 -1.4257 -5.6372 41 1 10.0521 -0.2699 -3.6047 42 1 7.7543 -0.5031 -2.8225 43 1 3.4984 -2.6527 0.0055 44 1 5.0413 -1.7694 0.1039 45 1 3.9877 0.0092 1.4325 46 1 3.6532 -1.5634 2.2020 47 1 1.2147 -1.9022 5.2947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947516813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:13 Heat of formation + Delta-G solvation = 48.882265 kcal Electronic energy + Delta-G solvation = -29060.754674 eV Core-core repulsion = 25209.106596 eV Total energy + Delta-G solvation = -3851.648077 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.37262 -39.71941 -37.97302 -37.37732 -34.93526 -33.75845 -32.44636 -31.76103 -30.85843 -30.60675 -29.72800 -26.67943 -25.58944 -24.49623 -23.85014 -23.06602 -22.51971 -21.23463 -20.52169 -19.52967 -18.40526 -17.83475 -17.58568 -16.50320 -16.08785 -15.76996 -15.30463 -15.24601 -15.01249 -14.70356 -14.49921 -14.35220 -14.16929 -13.77548 -13.57679 -13.43237 -13.29866 -13.22909 -12.56711 -12.07579 -12.03668 -11.91111 -11.84613 -11.65363 -11.39481 -11.16266 -11.12532 -10.74981 -10.62004 -10.52167 -10.39341 -10.27108 -10.15926 -9.90506 -9.55210 -9.40824 -9.10802 -9.01128 -8.58449 -8.51667 -6.93367 -5.99044 -3.37726 -0.19090 0.48600 1.46607 2.52143 2.89819 2.95988 3.33739 3.48630 3.53212 3.85610 3.92808 4.24488 4.31994 4.43025 4.52866 4.55511 4.79886 4.84194 4.91240 5.04166 5.06540 5.22550 5.22767 5.31366 5.34095 5.46705 5.54664 5.69502 5.72646 5.79089 5.92810 5.97198 6.02684 6.03627 6.15661 6.19581 6.23360 6.29168 6.30886 6.37397 6.44904 6.54443 6.62507 6.69146 6.74500 6.92026 7.01944 7.36444 7.52788 7.97987 8.03967 8.34020 8.92418 9.70086 10.09463 11.16421 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019083 B = 0.002679 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.922770 B =10449.800298 C =11308.218064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.173 3.827 3 H 0.031 0.969 4 C -0.136 4.136 5 C 0.149 3.851 6 H 0.086 0.914 7 N -0.711 5.711 8 C 0.557 3.443 9 O -0.525 6.525 10 C -0.066 4.066 11 C -0.141 4.141 12 C 0.126 3.874 13 N -0.460 5.460 14 C 0.123 3.877 15 C -0.101 4.101 16 C -0.097 4.097 17 C -0.120 4.120 18 C -0.099 4.099 19 C -0.067 4.067 20 C -0.141 4.141 21 C 0.134 3.866 22 N -0.601 5.601 23 C -0.262 4.262 24 H 0.088 0.912 25 C 0.031 3.969 26 N -0.904 5.904 27 Si 0.874 3.126 28 H -0.285 1.285 29 H -0.272 1.272 30 H -0.302 1.302 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.398 0.602 37 H 0.143 0.857 38 H 0.166 0.834 39 H 0.136 0.864 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.171 0.829 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.024 0.976 46 H 0.076 0.924 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.018 -0.862 -21.831 24.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.067 3.933 3 H 0.049 0.951 4 C -0.176 4.176 5 C 0.046 3.954 6 H 0.104 0.896 7 N -0.361 5.361 8 C 0.344 3.656 9 O -0.403 6.403 10 C -0.077 4.077 11 C -0.162 4.162 12 C -0.046 4.046 13 N -0.169 5.169 14 C 0.002 3.998 15 C -0.120 4.120 16 C -0.117 4.117 17 C -0.138 4.138 18 C -0.117 4.117 19 C -0.069 4.069 20 C -0.181 4.181 21 C 0.008 3.992 22 N -0.326 5.326 23 C -0.391 4.391 24 H 0.106 0.894 25 C -0.169 4.169 26 N -0.546 5.546 27 Si 0.704 3.296 28 H -0.213 1.213 29 H -0.197 1.197 30 H -0.230 1.230 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.233 0.767 37 H 0.161 0.839 38 H 0.183 0.817 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.188 0.812 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.042 0.958 46 H 0.095 0.905 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.867 -0.745 -21.912 24.930 hybrid contribution 0.239 0.543 0.893 1.072 sum 12.106 -0.202 -21.019 24.256 Atomic orbital electron populations 1.21786 0.94883 1.01964 1.00613 1.20399 0.93830 0.93309 0.85805 0.95098 1.22394 0.93128 1.02210 0.99827 1.21111 0.94728 0.96724 0.82804 0.89602 1.46224 1.12659 1.48172 1.29010 1.18053 0.82362 0.81494 0.83737 1.90593 1.55374 1.37448 1.56875 1.20461 0.93935 0.97633 0.95700 1.22451 1.00927 0.96749 0.96032 1.22908 0.91809 0.96264 0.93663 1.67799 1.03680 1.14712 1.30676 1.18892 0.94509 0.94751 0.91679 1.20773 0.90927 0.99606 1.00652 1.21008 0.99919 0.95877 0.94861 1.21131 0.96448 0.99657 0.96544 1.22137 0.92602 0.96166 1.00811 1.18698 0.93243 0.98881 0.96115 1.22485 1.00099 0.99972 0.95570 1.21368 0.84960 0.97022 0.95871 1.44505 1.01997 1.65556 1.20525 1.18837 0.97576 1.37643 0.85003 0.89403 1.25407 0.97516 0.98160 0.95841 1.69848 1.43154 1.37801 1.03829 0.87041 0.82723 0.82855 0.77008 1.21259 1.19736 1.22981 0.91504 0.94106 0.92354 0.91208 0.92118 0.76730 0.83913 0.81671 0.84631 0.85238 0.85302 0.81217 0.91492 0.92386 0.95794 0.90549 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 7.98 37.16 0.30 -2.02 16 2 C 0.17 3.18 3.49 -67.60 -0.24 2.94 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.14 -1.98 4.84 -26.61 -0.13 -2.11 16 5 C 0.15 2.26 2.41 -67.89 -0.16 2.09 16 6 H 0.09 1.44 7.58 -51.93 -0.39 1.04 16 7 N -0.71 -8.66 5.03 -54.70 -0.28 -8.94 16 8 C 0.56 7.57 7.73 -12.30 -0.10 7.48 16 9 O -0.53 -8.65 13.16 5.34 0.07 -8.58 16 10 C -0.07 -0.78 5.94 -104.34 -0.62 -1.40 16 11 C -0.14 -1.23 9.61 -38.96 -0.37 -1.61 16 12 C 0.13 1.09 11.14 -17.53 -0.20 0.90 16 13 N -0.46 -5.17 10.30 -11.01 -0.11 -5.28 16 14 C 0.12 1.47 6.61 -84.87 -0.56 0.91 16 15 C -0.10 -1.00 9.98 -39.43 -0.39 -1.39 16 16 C -0.10 -0.84 9.94 -39.95 -0.40 -1.23 16 17 C -0.12 -1.18 9.96 -39.89 -0.40 -1.58 16 18 C -0.10 -1.23 9.25 -39.60 -0.37 -1.59 16 19 C -0.07 -0.84 5.76 -106.52 -0.61 -1.46 16 20 C -0.14 -2.48 5.67 -26.38 -0.15 -2.63 16 21 C 0.13 2.87 4.28 -3.48 -0.01 2.86 16 22 N -0.60 -13.52 2.66 -164.52 -0.44 -13.96 16 23 C -0.26 -6.94 8.88 -15.06 -0.13 -7.07 16 24 H 0.09 2.45 6.54 -52.49 -0.34 2.11 16 25 C 0.03 0.86 5.15 -17.43 -0.09 0.77 16 26 N -0.90 -27.04 13.97 55.49 0.78 -26.27 16 27 Si 0.87 22.09 24.63 -169.99 -4.19 17.90 16 28 H -0.29 -7.01 6.55 56.52 0.37 -6.64 16 29 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 30 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 31 H 0.07 1.28 7.65 -51.93 -0.40 0.88 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 1.04 7.43 -51.93 -0.39 0.65 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.40 3.64 6.75 -40.82 -0.28 3.36 16 37 H 0.14 0.80 6.52 -52.49 -0.34 0.46 16 38 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16 39 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 42 H 0.17 2.36 4.96 -52.49 -0.26 2.10 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.52 7.33 -51.93 -0.38 0.14 16 46 H 0.08 1.80 5.19 -51.93 -0.27 1.54 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 368.47 15.07 5.55 5.55 Total: -1.00 -32.53 368.47 -9.69 -42.22 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.44 Total: 3.50 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -4.63 Total: -6.15 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.05 Total: -54.44 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.07 Total: -8.58 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.19 Total: 17.90 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.53 -9.69 -42.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947516813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.103 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds