Wall clock time and date at job start Tue Mar 31 2020 22:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.70131 * 2 1 4 4 C 1.53189 * 109.59179 * 239.64198 * 2 1 3 5 5 C 1.53037 * 109.31594 * 185.57586 * 4 2 1 6 6 H 1.08997 * 109.45998 * 301.34744 * 5 4 2 7 7 N 1.46493 * 109.46492 * 181.37025 * 5 4 2 8 8 C 1.34776 * 120.00296 * 154.99788 * 7 5 4 9 9 O 1.21534 * 119.99827 * 0.02562 * 8 7 5 10 10 C 1.47903 * 119.99746 * 180.02562 * 8 7 5 11 11 C 1.38891 * 121.11624 * 2.61700 * 10 8 7 12 12 C 1.39269 * 119.57730 * 179.81464 * 11 10 8 13 13 N 1.30993 * 121.88639 * 0.45321 * 12 11 10 14 14 C 1.33530 * 121.82547 * 359.78487 * 13 12 11 15 15 C 1.40715 * 120.97050 * 179.97438 * 14 13 12 16 16 C 1.36056 * 119.74258 * 180.02562 * 15 14 13 17 17 C 1.39343 * 121.05518 * 359.97438 * 16 15 14 18 18 C 1.36245 * 120.83937 * 0.02562 * 17 16 15 19 19 C 1.40103 * 119.64386 * 359.95997 * 18 17 16 20 20 C 1.53047 * 109.53742 * 61.36326 * 5 4 2 21 21 C 1.53628 * 109.24012 * 298.51375 * 20 5 4 22 22 N 1.46925 * 109.58540 * 120.34643 * 2 1 3 23 23 C 1.36936 * 120.63323 * 353.38311 * 22 2 1 24 24 H 1.07998 * 119.99872 * 33.02294 * 23 22 2 25 25 C 1.38812 * 119.99992 * 213.02435 * 23 22 2 26 26 N 1.31620 * 120.00176 * 201.89877 * 25 23 22 27 27 Si 1.86801 * 120.00146 * 21.89964 * 25 23 22 28 28 H 1.48502 * 109.47336 * 272.24097 * 27 25 23 29 29 H 1.48506 * 109.47031 * 32.23896 * 27 25 23 30 30 H 1.48504 * 109.47238 * 152.23782 * 27 25 23 31 31 H 1.09001 * 109.47400 * 299.64541 * 1 2 3 32 32 H 1.09002 * 109.46862 * 59.65073 * 1 2 3 33 33 H 1.09002 * 109.46506 * 179.64887 * 1 2 3 34 34 H 1.09004 * 109.49515 * 305.53037 * 4 2 1 35 35 H 1.08999 * 109.49447 * 65.62510 * 4 2 1 36 36 H 0.97000 * 119.99778 * 335.00223 * 7 5 4 37 37 H 1.07999 * 120.21128 * 359.97438 * 11 10 8 38 38 H 1.08005 * 119.05415 * 180.23815 * 12 11 10 39 39 H 1.08002 * 120.12816 * 0.04874 * 15 14 13 40 40 H 1.07998 * 119.47189 * 179.97438 * 16 15 14 41 41 H 1.08004 * 119.58323 * 180.02562 * 17 16 15 42 42 H 1.08001 * 120.18078 * 180.02562 * 18 17 16 43 43 H 1.09003 * 109.49527 * 58.58493 * 20 5 4 44 44 H 1.09001 * 109.49677 * 178.68427 * 20 5 4 45 45 H 1.08991 * 109.74055 * 295.11429 * 21 20 5 46 46 H 1.09000 * 109.65968 * 174.54849 * 21 20 5 47 47 H 0.96997 * 120.00136 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0437 -0.7294 -1.2453 5 6 3.5676 -0.8479 -1.1700 6 1 4.0062 0.1474 -1.0992 7 7 4.0654 -1.5160 -2.3749 8 6 5.3296 -1.3025 -2.7904 9 8 6.0568 -0.5560 -2.1651 10 6 5.8319 -1.9766 -4.0073 11 6 5.0050 -2.7918 -4.7694 12 6 5.5104 -3.4079 -5.9115 13 7 6.7544 -3.2496 -6.2902 14 6 7.6074 -2.4848 -5.6043 15 6 8.9402 -2.3278 -6.0271 16 6 9.7882 -1.5428 -5.3089 17 6 9.3589 -0.8875 -4.1565 18 6 8.0758 -1.0161 -3.7169 19 6 7.1752 -1.8163 -4.4320 20 6 3.9570 -1.6656 0.0637 21 6 3.4656 -0.9417 1.3266 22 7 2.0225 -0.6994 1.1946 23 6 1.1537 -1.1125 2.1691 24 1 0.1556 -1.4286 1.9040 25 6 1.5558 -1.1250 3.4976 26 7 0.9334 -1.8932 4.3664 27 14 2.9804 -0.0516 4.0524 28 1 4.2565 -0.7884 3.8683 29 1 3.0065 1.1934 3.2432 30 1 2.8106 0.2938 5.4867 31 1 -0.3634 0.5083 0.8931 32 1 -0.3633 0.5193 -0.8869 33 1 -0.3632 -1.0277 -0.0063 34 1 1.6031 -1.7254 -1.2912 35 1 1.7661 -0.1669 -2.1367 36 1 3.4851 -2.1120 -2.8738 37 1 3.9760 -2.9449 -4.4795 38 1 4.8589 -4.0370 -6.5001 39 1 9.2887 -2.8281 -6.9186 40 1 10.8104 -1.4257 -5.6372 41 1 10.0521 -0.2699 -3.6047 42 1 7.7543 -0.5031 -2.8225 43 1 3.4984 -2.6527 0.0055 44 1 5.0413 -1.7694 0.1039 45 1 3.9877 0.0092 1.4325 46 1 3.6532 -1.5634 2.2020 47 1 1.2147 -1.9022 5.2947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947516813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:11 Heat of formation + Delta-G solvation = 27.773939 kcal Electronic energy + Delta-G solvation = -29061.669999 eV Core-core repulsion = 25209.106596 eV Total energy + Delta-G solvation = -3852.563403 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.19622 -40.80193 -39.39310 -38.10559 -36.28361 -34.66263 -34.19426 -33.25041 -32.04705 -31.53450 -30.75878 -28.13064 -26.81790 -25.85919 -24.59950 -24.33895 -23.77458 -22.39758 -21.73593 -21.03782 -19.24628 -18.71495 -18.40820 -18.32106 -17.38416 -16.91746 -16.50470 -16.33792 -16.30408 -15.83502 -15.57372 -15.34441 -15.30108 -14.95973 -14.84390 -14.72931 -14.49763 -14.27380 -14.08386 -13.84638 -13.47488 -12.82634 -12.80873 -12.74888 -12.67712 -12.64527 -12.34096 -12.26684 -12.07435 -11.89903 -11.80015 -11.60211 -11.55611 -11.47254 -11.25008 -10.68903 -10.34906 -10.18610 -9.82521 -9.31100 -8.84065 -8.15871 -5.48469 -0.97239 -0.23826 0.64890 1.29290 1.39218 1.47089 1.71223 1.88559 2.07918 2.42808 3.04649 3.07773 3.26269 3.30397 3.41828 3.61465 3.67281 3.78543 3.85162 3.92701 4.15053 4.19113 4.21449 4.23311 4.39142 4.44084 4.52119 4.54004 4.57699 4.63829 4.71034 4.76059 4.85770 4.93577 5.00690 5.03422 5.04857 5.06491 5.11298 5.21578 5.33061 5.38800 5.47561 5.49409 5.56659 5.58820 5.86674 5.94671 6.22921 6.40225 6.79478 6.95901 7.06563 7.65693 8.08811 9.03619 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019083 B = 0.002679 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.922770 B =10449.800298 C =11308.218064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.162 3.838 3 H 0.033 0.967 4 C -0.121 4.121 5 C 0.160 3.840 6 H 0.071 0.929 7 N -0.696 5.696 8 C 0.557 3.443 9 O -0.561 6.561 10 C -0.093 4.093 11 C -0.119 4.119 12 C 0.126 3.874 13 N -0.476 5.476 14 C 0.101 3.899 15 C -0.106 4.106 16 C -0.094 4.094 17 C -0.115 4.115 18 C -0.131 4.131 19 C -0.087 4.087 20 C -0.129 4.129 21 C 0.131 3.869 22 N -0.614 5.614 23 C -0.235 4.235 24 H 0.070 0.930 25 C -0.025 4.025 26 N -0.951 5.951 27 Si 0.924 3.076 28 H -0.279 1.279 29 H -0.271 1.271 30 H -0.310 1.310 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.416 0.584 37 H 0.179 0.821 38 H 0.206 0.794 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.020 0.980 46 H 0.049 0.951 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.456 -1.201 -25.552 28.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.056 3.944 3 H 0.050 0.950 4 C -0.160 4.160 5 C 0.056 3.944 6 H 0.089 0.911 7 N -0.347 5.347 8 C 0.345 3.655 9 O -0.441 6.441 10 C -0.104 4.104 11 C -0.139 4.139 12 C -0.047 4.047 13 N -0.184 5.184 14 C -0.020 4.020 15 C -0.125 4.125 16 C -0.114 4.114 17 C -0.133 4.133 18 C -0.149 4.149 19 C -0.090 4.090 20 C -0.170 4.170 21 C 0.005 3.995 22 N -0.339 5.339 23 C -0.365 4.365 24 H 0.087 0.913 25 C -0.220 4.220 26 N -0.597 5.597 27 Si 0.754 3.246 28 H -0.206 1.206 29 H -0.196 1.196 30 H -0.239 1.239 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.254 0.746 37 H 0.197 0.803 38 H 0.223 0.777 39 H 0.171 0.829 40 H 0.181 0.819 41 H 0.165 0.835 42 H 0.166 0.834 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.038 0.962 46 H 0.067 0.933 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.319 -1.078 -25.699 28.520 hybrid contribution 0.087 0.630 1.908 2.012 sum 12.407 -0.448 -23.791 26.835 Atomic orbital electron populations 1.21719 0.93982 1.01564 1.01309 1.20718 0.94703 0.93479 0.85475 0.94956 1.22214 0.92129 1.02650 0.99017 1.20775 0.95204 0.95666 0.82796 0.91076 1.45891 1.12607 1.48193 1.28044 1.18361 0.82181 0.80934 0.84002 1.90595 1.56340 1.39021 1.58112 1.20365 0.94457 0.99618 0.95946 1.22866 1.01971 0.94252 0.94837 1.23626 0.91467 0.95876 0.93684 1.67859 1.04745 1.14856 1.30969 1.19176 0.95615 0.95387 0.91812 1.21104 0.90470 0.99640 1.01256 1.21341 1.01325 0.94788 0.93906 1.21425 0.95797 0.99218 0.96879 1.22043 0.94090 0.97749 1.01016 1.18891 0.93870 0.99450 0.96761 1.22300 0.99736 0.99834 0.95088 1.21301 0.84609 0.96733 0.96892 1.44674 1.01899 1.66304 1.21001 1.18842 0.97142 1.34867 0.85608 0.91288 1.25900 0.99965 0.99778 0.96389 1.69948 1.45579 1.40179 1.04002 0.86210 0.80939 0.81499 0.75950 1.20601 1.19593 1.23892 0.94248 0.89956 0.93302 0.90472 0.88419 0.74573 0.80337 0.77694 0.82921 0.81867 0.83488 0.83411 0.91395 0.92660 0.96197 0.93261 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 7.98 71.98 0.57 -3.59 16 2 C 0.16 5.61 3.49 44.97 0.16 5.77 16 3 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 4 C -0.12 -3.10 4.84 30.67 0.15 -2.95 16 5 C 0.16 4.50 2.41 45.02 0.11 4.60 16 6 H 0.07 2.28 7.58 -2.39 -0.02 2.26 16 7 N -0.70 -15.14 5.03 -445.25 -2.24 -17.38 16 8 C 0.56 14.55 7.73 86.80 0.67 15.22 16 9 O -0.56 -18.74 13.16 -3.82 -0.05 -18.79 16 10 C -0.09 -2.07 5.94 -19.68 -0.12 -2.18 16 11 C -0.12 -1.68 9.61 22.67 0.22 -1.46 16 12 C 0.13 1.74 11.14 85.07 0.95 2.69 16 13 N -0.48 -9.59 10.30 -188.74 -1.94 -11.53 16 14 C 0.10 2.28 6.61 40.34 0.27 2.54 16 15 C -0.11 -1.92 9.98 22.37 0.22 -1.69 16 16 C -0.09 -1.45 9.94 22.03 0.22 -1.23 16 17 C -0.12 -2.19 9.96 22.07 0.22 -1.98 16 18 C -0.13 -3.31 9.25 22.26 0.21 -3.10 16 19 C -0.09 -2.17 5.76 -21.09 -0.12 -2.29 16 20 C -0.13 -4.44 5.67 30.82 0.17 -4.27 16 21 C 0.13 5.59 4.28 86.51 0.37 5.96 16 22 N -0.61 -27.35 2.66 -674.41 -1.80 -29.14 16 23 C -0.23 -12.59 8.88 84.03 0.75 -11.85 16 24 H 0.07 3.93 6.54 -2.91 -0.02 3.91 16 25 C -0.02 -1.44 5.15 84.86 0.44 -1.00 16 26 N -0.95 -58.77 13.97 21.65 0.30 -58.47 16 27 Si 0.92 46.94 24.63 68.60 1.69 48.63 16 28 H -0.28 -13.70 6.55 99.48 0.65 -13.05 16 29 H -0.27 -13.49 7.11 99.48 0.71 -12.78 16 30 H -0.31 -16.04 7.11 99.48 0.71 -15.34 16 31 H 0.04 1.47 7.65 -2.39 -0.02 1.45 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.05 1.66 7.43 -2.39 -0.02 1.65 16 34 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.10 1.88 8.14 -2.39 -0.02 1.87 16 36 H 0.42 5.89 6.75 -92.71 -0.63 5.27 16 37 H 0.18 1.08 6.52 -2.91 -0.02 1.06 16 38 H 0.21 1.05 8.06 -2.91 -0.02 1.03 16 39 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 40 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 41 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 42 H 0.15 4.37 4.96 -2.92 -0.01 4.36 16 43 H 0.07 2.31 8.14 -2.39 -0.02 2.30 16 44 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.02 0.87 7.33 -2.39 -0.02 0.86 16 46 H 0.05 2.36 5.19 -2.39 -0.01 2.35 16 47 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -75.03 368.47 1.73 -73.30 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.32 Total: 14.20 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 5.45 Total: -0.81 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -5.68 Total: -116.52 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.05 Total: -18.79 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.69 Total: 48.63 kcal Total: -75.03 1.73 -73.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947516813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.070 kcal (2) G-P(sol) polarization free energy of solvation -75.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds