Wall clock time and date at job start Tue Mar 31 2020 22:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.69927 * 2 1 4 4 C 1.53196 * 109.58734 * 120.35623 * 2 1 3 5 5 C 1.53033 * 109.31255 * 65.14996 * 4 2 1 6 6 H 1.08996 * 109.46465 * 301.34614 * 5 4 2 7 7 N 1.46505 * 109.45976 * 181.38514 * 5 4 2 8 8 C 1.34773 * 120.00037 * 155.00161 * 7 5 4 9 9 O 1.21582 * 120.00057 * 0.02562 * 8 7 5 10 10 C 1.47557 * 119.99677 * 180.02562 * 8 7 5 11 11 C 1.38685 * 120.38869 * 5.86939 * 10 8 7 12 12 C 1.38976 * 120.53443 * 179.83344 * 11 10 8 13 13 C 1.36208 * 121.23770 * 0.41321 * 12 11 10 14 14 C 1.40707 * 120.20238 * 359.82394 * 13 12 11 15 15 N 1.33680 * 120.95128 * 179.97438 * 14 13 12 16 16 C 1.31069 * 121.34978 * 179.97438 * 15 14 13 17 17 C 1.39342 * 121.70424 * 0.03021 * 16 15 14 18 18 C 1.36678 * 119.86471 * 359.97217 * 17 16 15 19 19 C 1.40470 * 118.16812 * 0.02562 * 18 17 16 20 20 C 1.53042 * 109.53901 * 61.36818 * 5 4 2 21 21 C 1.53199 * 109.31276 * 298.63102 * 20 5 4 22 22 N 1.46925 * 109.58260 * 239.64548 * 2 1 3 23 23 C 1.36943 * 120.63265 * 113.80131 * 22 2 1 24 24 H 1.07994 * 119.99489 * 31.17526 * 23 22 2 25 25 C 1.38807 * 120.00096 * 211.17940 * 23 22 2 26 26 N 1.31622 * 119.99881 * 9.83680 * 25 23 22 27 27 Si 1.86800 * 120.00136 * 189.83375 * 25 23 22 28 28 H 1.48497 * 109.46879 * 60.00124 * 27 25 23 29 29 H 1.48496 * 109.46884 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47074 * 299.99946 * 27 25 23 31 31 H 1.09003 * 109.46908 * 180.36141 * 1 2 3 32 32 H 1.08997 * 109.46974 * 300.35379 * 1 2 3 33 33 H 1.08996 * 109.47303 * 60.35797 * 1 2 3 34 34 H 1.09002 * 109.49453 * 185.10463 * 4 2 1 35 35 H 1.08998 * 109.49446 * 305.16279 * 4 2 1 36 36 H 0.97001 * 119.99894 * 334.99945 * 7 5 4 37 37 H 1.08006 * 119.73623 * 0.02715 * 11 10 8 38 38 H 1.08004 * 119.37717 * 180.21784 * 12 11 10 39 39 H 1.08002 * 119.89598 * 179.80919 * 13 12 11 40 40 H 1.08000 * 119.15014 * 180.02562 * 16 15 14 41 41 H 1.08000 * 120.06784 * 179.97438 * 17 16 15 42 42 H 1.08001 * 120.91162 * 180.02562 * 18 17 16 43 43 H 1.08996 * 109.49886 * 178.68071 * 20 5 4 44 44 H 1.08996 * 109.49969 * 58.58014 * 20 5 4 45 45 H 1.09003 * 109.58581 * 294.85256 * 21 20 5 46 46 H 1.08994 * 109.58857 * 174.42405 * 21 20 5 47 47 H 0.97001 * 120.00257 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 1.6415 -2.2040 1.1702 6 1 0.5566 -2.2815 1.0993 7 7 2.1024 -2.8978 2.3754 8 6 1.4752 -4.0160 2.7908 9 8 0.5270 -4.4493 2.1651 10 6 1.9391 -4.7143 4.0051 11 6 2.9394 -4.1636 4.7921 12 6 3.3763 -4.8170 5.9383 13 6 2.8448 -6.0131 6.3155 14 6 1.8312 -6.6118 5.5448 15 7 1.2994 -7.7855 5.9008 16 6 0.3546 -8.3500 5.1890 17 6 -0.1412 -7.7579 4.0292 18 6 0.3599 -6.5574 3.6101 19 6 1.3723 -5.9573 4.3771 20 6 2.2801 -2.8464 -0.0634 21 6 1.7692 -2.1411 -1.3238 22 7 2.0225 -0.6995 -1.1945 23 6 2.7044 -0.0209 -2.1691 24 1 3.3148 0.8307 -1.9076 25 6 2.6108 -0.4276 -3.4929 26 7 1.7239 -1.3354 -3.8414 27 14 3.7437 0.3137 -4.7800 28 1 5.1560 0.0325 -4.4173 29 1 3.4451 -0.2847 -6.1058 30 1 3.5310 1.7821 -4.8399 31 1 -0.3633 -1.0277 0.0065 32 1 -0.3633 0.5193 0.8868 33 1 -0.3634 0.5082 -0.8931 34 1 3.1298 -0.6503 1.2913 35 1 1.6081 -0.2780 2.1368 36 1 2.8591 -2.5523 2.8744 37 1 3.3803 -3.2177 4.5139 38 1 4.1539 -4.3694 6.5394 39 1 3.2028 -6.5034 7.2087 40 1 -0.0500 -9.2985 5.5097 41 1 -0.9200 -8.2467 3.4625 42 1 -0.0122 -6.0832 2.7139 43 1 2.0124 -3.9022 -0.1036 44 1 3.3640 -2.7474 -0.0053 45 1 0.6986 -2.3156 -1.4316 46 1 2.2944 -2.5275 -2.1971 47 1 1.6587 -1.6199 -4.7665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947593621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:08 Heat of formation + Delta-G solvation = 44.852969 kcal Electronic energy + Delta-G solvation = -29124.045250 eV Core-core repulsion = 25272.222450 eV Total energy + Delta-G solvation = -3851.822801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.24880 -39.65553 -37.85823 -37.09814 -34.68418 -33.47463 -32.62733 -31.17695 -30.78343 -30.31215 -29.23105 -26.94872 -25.00486 -24.39382 -23.69292 -23.39026 -21.94295 -21.55704 -20.57126 -18.74363 -18.21820 -17.72850 -17.08231 -16.78786 -16.09725 -15.97665 -15.10314 -15.00861 -14.88678 -14.47391 -14.28574 -14.02124 -13.77521 -13.74662 -13.38090 -13.24032 -12.88270 -12.68446 -12.50997 -12.34005 -12.25121 -11.93891 -11.61277 -11.40364 -11.03046 -10.96670 -10.83559 -10.67490 -10.63284 -10.37526 -10.27243 -10.20997 -10.00250 -9.77662 -9.51122 -9.24354 -9.06373 -8.85593 -8.51964 -8.41316 -6.65524 -5.79375 -3.28121 -0.08023 0.57023 1.57299 2.45051 3.11758 3.18909 3.36669 3.42358 3.42655 3.93463 4.01525 4.39843 4.43869 4.46084 4.57204 4.66707 4.84704 4.88149 5.09040 5.15986 5.27963 5.35153 5.40622 5.51939 5.56711 5.60415 5.71339 5.74633 5.90141 5.96472 5.99051 6.04006 6.12363 6.22808 6.25017 6.35599 6.40712 6.45915 6.55152 6.55789 6.63555 6.77114 6.84643 6.92542 7.13845 7.38851 7.56877 7.65936 7.72069 7.77505 8.24730 8.46894 9.20973 9.82195 10.40027 11.28166 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020488 B = 0.002495 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.313347 B =11218.686201 C =11584.285943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.170 3.830 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.148 3.852 6 H 0.088 0.912 7 N -0.714 5.714 8 C 0.557 3.443 9 O -0.533 6.533 10 C -0.105 4.105 11 C -0.079 4.079 12 C -0.110 4.110 13 C -0.070 4.070 14 C 0.118 3.882 15 N -0.481 5.481 16 C 0.133 3.867 17 C -0.181 4.181 18 C -0.057 4.057 19 C -0.068 4.068 20 C -0.148 4.148 21 C 0.175 3.825 22 N -0.585 5.585 23 C -0.254 4.254 24 H 0.064 0.936 25 C 0.006 3.994 26 N -0.903 5.903 27 Si 0.904 3.096 28 H -0.284 1.284 29 H -0.290 1.290 30 H -0.283 1.283 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.395 0.605 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.159 0.841 41 H 0.139 0.861 42 H 0.181 0.819 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.021 0.979 46 H 0.092 0.908 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.758 -8.496 20.008 21.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.084 0.916 4 C -0.173 4.173 5 C 0.046 3.954 6 H 0.106 0.894 7 N -0.363 5.363 8 C 0.344 3.656 9 O -0.412 6.412 10 C -0.109 4.109 11 C -0.098 4.098 12 C -0.130 4.130 13 C -0.089 4.089 14 C -0.003 4.003 15 N -0.189 5.189 16 C -0.040 4.040 17 C -0.201 4.201 18 C -0.082 4.082 19 C -0.071 4.071 20 C -0.188 4.188 21 C 0.048 3.952 22 N -0.307 5.307 23 C -0.384 4.384 24 H 0.082 0.918 25 C -0.193 4.193 26 N -0.547 5.547 27 Si 0.734 3.266 28 H -0.210 1.210 29 H -0.216 1.216 30 H -0.209 1.209 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.229 0.771 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.176 0.824 41 H 0.157 0.843 42 H 0.197 0.803 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.039 0.961 46 H 0.110 0.890 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.447 -9.164 20.122 22.115 hybrid contribution 0.608 0.810 -1.172 1.549 sum 1.055 -8.354 18.950 20.736 Atomic orbital electron populations 1.22300 0.98675 1.01097 1.00092 1.20445 0.91790 0.95100 0.86466 0.91613 1.22316 1.01191 0.94039 0.99763 1.21193 1.00001 0.91364 0.82865 0.89392 1.46307 1.34278 1.26583 1.29143 1.18078 0.82884 0.80825 0.83847 1.90565 1.28292 1.65018 1.57350 1.20022 0.98650 0.95526 0.96724 1.21453 0.94668 0.99548 0.94110 1.20824 1.00302 0.95164 0.96735 1.20978 0.94104 0.94789 0.99058 1.18851 0.96597 0.91838 0.93012 1.68044 1.10378 1.09140 1.31372 1.23013 0.91366 0.98758 0.90848 1.22081 1.02381 0.97111 0.98538 1.22737 0.91932 0.93653 0.99924 1.18660 0.97708 0.94695 0.96018 1.22603 1.00163 0.99197 0.96850 1.20778 0.97743 0.82888 0.93760 1.44119 1.63717 1.03459 1.19372 1.19108 1.20663 1.12539 0.86072 0.91847 1.25173 0.97683 0.99278 0.97188 1.69954 1.34508 1.33156 1.17062 0.86349 0.80488 0.78828 0.80908 1.21035 1.21631 1.20882 0.93204 0.94515 0.92590 0.91865 0.92553 0.77077 0.84894 0.84535 0.84405 0.82405 0.84339 0.80264 0.92911 0.92695 0.96077 0.88992 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.03 37.16 0.34 -2.70 16 2 C 0.17 3.33 3.29 -67.60 -0.22 3.11 16 3 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 4 C -0.13 -2.11 5.02 -26.61 -0.13 -2.25 16 5 C 0.15 2.46 2.21 -67.89 -0.15 2.31 16 6 H 0.09 1.64 5.93 -51.93 -0.31 1.33 16 7 N -0.71 -9.62 5.03 -54.80 -0.28 -9.90 16 8 C 0.56 8.17 7.69 -12.46 -0.10 8.07 16 9 O -0.53 -9.39 13.07 5.29 0.07 -9.32 16 10 C -0.11 -1.31 5.90 -104.65 -0.62 -1.93 16 11 C -0.08 -0.73 9.51 -39.14 -0.37 -1.10 16 12 C -0.11 -0.89 9.92 -40.04 -0.40 -1.29 16 13 C -0.07 -0.68 9.96 -39.38 -0.39 -1.07 16 14 C 0.12 1.45 6.60 -84.88 -0.56 0.89 16 15 N -0.48 -5.82 10.34 -10.99 -0.11 -5.94 16 16 C 0.13 1.33 11.15 -17.47 -0.19 1.13 16 17 C -0.18 -1.88 10.04 -39.73 -0.40 -2.28 16 18 C -0.06 -0.75 9.29 -39.31 -0.37 -1.11 16 19 C -0.07 -0.90 5.76 -106.53 -0.61 -1.51 16 20 C -0.15 -2.86 5.65 -26.61 -0.15 -3.01 16 21 C 0.17 4.10 4.84 -3.70 -0.02 4.09 16 22 N -0.59 -13.93 2.70 -164.77 -0.44 -14.38 16 23 C -0.25 -6.72 9.59 -15.06 -0.14 -6.86 16 24 H 0.06 1.64 7.85 -52.49 -0.41 1.23 16 25 C 0.01 0.15 5.07 -17.43 -0.09 0.07 16 26 N -0.90 -25.72 10.99 55.49 0.61 -25.11 16 27 Si 0.90 21.31 29.57 -169.99 -5.03 16.28 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 31 H 0.05 0.97 5.72 -51.93 -0.30 0.67 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.39 4.11 6.67 -40.82 -0.27 3.84 16 37 H 0.13 0.89 6.43 -52.48 -0.34 0.55 16 38 H 0.14 0.67 8.06 -52.48 -0.42 0.24 16 39 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 42 H 0.18 2.61 4.96 -52.50 -0.26 2.34 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.02 0.53 7.50 -51.93 -0.39 0.14 16 46 H 0.09 2.45 6.06 -51.93 -0.31 2.14 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -31.62 371.96 -10.52 -42.14 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -6.37 Total: 6.05 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -4.58 Total: -5.44 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.22 Total: -55.32 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.07 Total: -9.32 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.62 -10.52 -42.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947593621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.996 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds