Wall clock time and date at job start Tue Mar 31 2020 22:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.69927 * 2 1 4 4 C 1.53196 * 109.58734 * 120.35623 * 2 1 3 5 5 C 1.53033 * 109.31255 * 65.14996 * 4 2 1 6 6 H 1.08996 * 109.46465 * 301.34614 * 5 4 2 7 7 N 1.46505 * 109.45976 * 181.38514 * 5 4 2 8 8 C 1.34773 * 120.00037 * 155.00161 * 7 5 4 9 9 O 1.21582 * 120.00057 * 0.02562 * 8 7 5 10 10 C 1.47557 * 119.99677 * 180.02562 * 8 7 5 11 11 C 1.38685 * 120.38869 * 5.86939 * 10 8 7 12 12 C 1.38976 * 120.53443 * 179.83344 * 11 10 8 13 13 C 1.36208 * 121.23770 * 0.41321 * 12 11 10 14 14 C 1.40707 * 120.20238 * 359.82394 * 13 12 11 15 15 N 1.33680 * 120.95128 * 179.97438 * 14 13 12 16 16 C 1.31069 * 121.34978 * 179.97438 * 15 14 13 17 17 C 1.39342 * 121.70424 * 0.03021 * 16 15 14 18 18 C 1.36678 * 119.86471 * 359.97217 * 17 16 15 19 19 C 1.40470 * 118.16812 * 0.02562 * 18 17 16 20 20 C 1.53042 * 109.53901 * 61.36818 * 5 4 2 21 21 C 1.53199 * 109.31276 * 298.63102 * 20 5 4 22 22 N 1.46925 * 109.58260 * 239.64548 * 2 1 3 23 23 C 1.36943 * 120.63265 * 113.80131 * 22 2 1 24 24 H 1.07994 * 119.99489 * 31.17526 * 23 22 2 25 25 C 1.38807 * 120.00096 * 211.17940 * 23 22 2 26 26 N 1.31622 * 119.99881 * 9.83680 * 25 23 22 27 27 Si 1.86800 * 120.00136 * 189.83375 * 25 23 22 28 28 H 1.48497 * 109.46879 * 60.00124 * 27 25 23 29 29 H 1.48496 * 109.46884 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47074 * 299.99946 * 27 25 23 31 31 H 1.09003 * 109.46908 * 180.36141 * 1 2 3 32 32 H 1.08997 * 109.46974 * 300.35379 * 1 2 3 33 33 H 1.08996 * 109.47303 * 60.35797 * 1 2 3 34 34 H 1.09002 * 109.49453 * 185.10463 * 4 2 1 35 35 H 1.08998 * 109.49446 * 305.16279 * 4 2 1 36 36 H 0.97001 * 119.99894 * 334.99945 * 7 5 4 37 37 H 1.08006 * 119.73623 * 0.02715 * 11 10 8 38 38 H 1.08004 * 119.37717 * 180.21784 * 12 11 10 39 39 H 1.08002 * 119.89598 * 179.80919 * 13 12 11 40 40 H 1.08000 * 119.15014 * 180.02562 * 16 15 14 41 41 H 1.08000 * 120.06784 * 179.97438 * 17 16 15 42 42 H 1.08001 * 120.91162 * 180.02562 * 18 17 16 43 43 H 1.08996 * 109.49886 * 178.68071 * 20 5 4 44 44 H 1.08996 * 109.49969 * 58.58014 * 20 5 4 45 45 H 1.09003 * 109.58581 * 294.85256 * 21 20 5 46 46 H 1.08994 * 109.58857 * 174.42405 * 21 20 5 47 47 H 0.97001 * 120.00257 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 1.6415 -2.2040 1.1702 6 1 0.5566 -2.2815 1.0993 7 7 2.1024 -2.8978 2.3754 8 6 1.4752 -4.0160 2.7908 9 8 0.5270 -4.4493 2.1651 10 6 1.9391 -4.7143 4.0051 11 6 2.9394 -4.1636 4.7921 12 6 3.3763 -4.8170 5.9383 13 6 2.8448 -6.0131 6.3155 14 6 1.8312 -6.6118 5.5448 15 7 1.2994 -7.7855 5.9008 16 6 0.3546 -8.3500 5.1890 17 6 -0.1412 -7.7579 4.0292 18 6 0.3599 -6.5574 3.6101 19 6 1.3723 -5.9573 4.3771 20 6 2.2801 -2.8464 -0.0634 21 6 1.7692 -2.1411 -1.3238 22 7 2.0225 -0.6995 -1.1945 23 6 2.7044 -0.0209 -2.1691 24 1 3.3148 0.8307 -1.9076 25 6 2.6108 -0.4276 -3.4929 26 7 1.7239 -1.3354 -3.8414 27 14 3.7437 0.3137 -4.7800 28 1 5.1560 0.0325 -4.4173 29 1 3.4451 -0.2847 -6.1058 30 1 3.5310 1.7821 -4.8399 31 1 -0.3633 -1.0277 0.0065 32 1 -0.3633 0.5193 0.8868 33 1 -0.3634 0.5082 -0.8931 34 1 3.1298 -0.6503 1.2913 35 1 1.6081 -0.2780 2.1368 36 1 2.8591 -2.5523 2.8744 37 1 3.3803 -3.2177 4.5139 38 1 4.1539 -4.3694 6.5394 39 1 3.2028 -6.5034 7.2087 40 1 -0.0500 -9.2985 5.5097 41 1 -0.9200 -8.2467 3.4625 42 1 -0.0122 -6.0832 2.7139 43 1 2.0124 -3.9022 -0.1036 44 1 3.3640 -2.7474 -0.0053 45 1 0.6986 -2.3156 -1.4316 46 1 2.2944 -2.5275 -2.1971 47 1 1.6587 -1.6199 -4.7665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947593621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:07 Heat of formation + Delta-G solvation = 25.686008 kcal Electronic energy + Delta-G solvation = -29124.876392 eV Core-core repulsion = 25272.222450 eV Total energy + Delta-G solvation = -3852.653943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.12557 -40.81642 -39.32160 -37.91766 -36.14035 -34.38340 -34.31494 -32.62183 -31.78479 -31.54847 -30.58876 -28.51221 -26.32348 -25.65657 -24.65736 -24.38762 -23.62861 -22.92217 -21.69433 -20.14582 -19.28231 -18.89119 -18.33338 -17.88275 -17.27925 -17.09745 -16.64921 -16.17886 -15.90018 -15.67263 -15.49759 -15.39442 -15.19126 -14.79901 -14.70579 -14.30024 -14.20770 -14.11179 -13.95050 -13.75614 -13.13223 -13.02098 -12.87744 -12.72424 -12.64472 -12.57315 -12.33419 -12.28978 -12.05083 -12.01097 -11.76717 -11.53959 -11.49714 -11.28167 -11.04228 -10.55360 -10.28001 -10.09691 -9.82711 -9.32090 -8.61916 -7.83680 -5.34807 -0.89717 -0.20383 0.66938 1.48145 1.49730 1.56287 1.65201 2.03290 2.18877 2.51970 3.09932 3.30629 3.32603 3.49931 3.64965 3.73446 3.80651 3.83767 3.89483 4.05933 4.09313 4.16118 4.29677 4.41988 4.45556 4.45653 4.52775 4.71593 4.75229 4.77004 4.79331 4.85640 4.88766 5.03760 5.08437 5.10504 5.17178 5.20303 5.24417 5.32419 5.35307 5.46319 5.50792 5.55552 5.61537 5.68772 5.79031 5.79303 6.44459 6.50899 6.84203 7.18101 7.18372 7.88665 8.41631 9.21894 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020488 B = 0.002495 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.313347 B =11218.686201 C =11584.285943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 H 0.071 0.929 4 C -0.119 4.119 5 C 0.162 3.838 6 H 0.066 0.934 7 N -0.700 5.700 8 C 0.555 3.445 9 O -0.572 6.572 10 C -0.137 4.137 11 C -0.058 4.058 12 C -0.102 4.102 13 C -0.071 4.071 14 C 0.095 3.905 15 N -0.495 5.495 16 C 0.128 3.872 17 C -0.173 4.173 18 C -0.091 4.091 19 C -0.087 4.087 20 C -0.133 4.133 21 C 0.186 3.814 22 N -0.600 5.600 23 C -0.258 4.258 24 H 0.072 0.928 25 C -0.052 4.052 26 N -0.938 5.938 27 Si 0.968 3.032 28 H -0.277 1.277 29 H -0.299 1.299 30 H -0.274 1.274 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.027 0.973 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.414 0.586 37 H 0.165 0.835 38 H 0.180 0.820 39 H 0.158 0.842 40 H 0.194 0.806 41 H 0.162 0.838 42 H 0.157 0.843 43 H 0.041 0.959 44 H 0.059 0.941 45 H -0.010 1.010 46 H 0.054 0.946 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.818 -7.669 23.525 24.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.089 0.911 4 C -0.158 4.158 5 C 0.058 3.942 6 H 0.084 0.916 7 N -0.351 5.351 8 C 0.344 3.656 9 O -0.454 6.454 10 C -0.141 4.141 11 C -0.077 4.077 12 C -0.121 4.121 13 C -0.089 4.089 14 C -0.026 4.026 15 N -0.203 5.203 16 C -0.044 4.044 17 C -0.193 4.193 18 C -0.116 4.116 19 C -0.090 4.090 20 C -0.173 4.173 21 C 0.060 3.940 22 N -0.322 5.322 23 C -0.388 4.388 24 H 0.089 0.911 25 C -0.247 4.247 26 N -0.584 5.584 27 Si 0.796 3.204 28 H -0.202 1.202 29 H -0.226 1.226 30 H -0.200 1.200 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.252 0.748 37 H 0.182 0.818 38 H 0.197 0.803 39 H 0.176 0.824 40 H 0.211 0.789 41 H 0.179 0.821 42 H 0.174 0.826 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.008 0.992 46 H 0.073 0.927 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.537 -8.308 23.699 25.241 hybrid contribution -0.059 0.515 -2.176 2.237 sum 2.479 -7.793 21.523 23.024 Atomic orbital electron populations 1.22188 0.98277 1.00264 1.00531 1.20715 0.92127 0.95548 0.86250 0.91062 1.22148 1.02043 0.92580 0.99007 1.20776 0.98480 0.92142 0.82844 0.91587 1.45957 1.34826 1.26229 1.28096 1.18506 0.82241 0.80612 0.84275 1.90570 1.30076 1.65978 1.58743 1.19862 1.01136 0.96073 0.96998 1.21882 0.92433 1.00079 0.93256 1.21278 1.00360 0.94246 0.96203 1.21353 0.93056 0.95322 0.99220 1.19234 0.97769 0.92291 0.93313 1.68097 1.11028 1.09321 1.31891 1.23573 0.90763 0.99758 0.90286 1.22365 1.02180 0.96085 0.98673 1.22651 0.93604 0.95265 1.00093 1.18860 0.98070 0.95396 0.96658 1.22348 1.00286 0.98229 0.96459 1.20417 0.95390 0.83745 0.94483 1.44324 1.64052 1.03565 1.20281 1.19500 1.20358 1.12225 0.86728 0.91066 1.25931 0.99323 1.00148 0.99277 1.70149 1.36525 1.34967 1.16775 0.85340 0.78869 0.78203 0.77990 1.20241 1.22580 1.20013 0.94738 0.90701 0.95344 0.90587 0.88859 0.74821 0.81802 0.80294 0.82408 0.78887 0.82072 0.82588 0.93990 0.92185 0.99216 0.92727 0.94334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.70 9.03 71.98 0.65 -5.05 16 2 C 0.16 6.10 3.29 44.98 0.15 6.24 16 3 H 0.07 2.63 7.93 -2.39 -0.02 2.62 16 4 C -0.12 -3.42 5.02 30.67 0.15 -3.27 16 5 C 0.16 5.24 2.21 45.02 0.10 5.34 16 6 H 0.07 2.49 5.93 -2.39 -0.01 2.48 16 7 N -0.70 -17.66 5.03 -445.57 -2.24 -19.90 16 8 C 0.55 16.23 7.69 86.70 0.67 16.89 16 9 O -0.57 -21.25 13.07 -3.97 -0.05 -21.30 16 10 C -0.14 -3.28 5.90 -19.89 -0.12 -3.40 16 11 C -0.06 -0.87 9.51 22.55 0.21 -0.66 16 12 C -0.10 -1.20 9.92 21.97 0.22 -0.98 16 13 C -0.07 -1.16 9.96 22.40 0.22 -0.93 16 14 C 0.09 2.22 6.60 40.27 0.27 2.49 16 15 N -0.50 -11.37 10.34 -188.69 -1.95 -13.32 16 16 C 0.13 2.42 11.15 85.07 0.95 3.37 16 17 C -0.17 -3.60 10.04 22.17 0.22 -3.38 16 18 C -0.09 -2.49 9.29 22.45 0.21 -2.28 16 19 C -0.09 -2.31 5.76 -21.10 -0.12 -2.43 16 20 C -0.13 -5.25 5.65 30.67 0.17 -5.08 16 21 C 0.19 9.21 4.84 86.36 0.42 9.63 16 22 N -0.60 -29.01 2.70 -675.20 -1.82 -30.83 16 23 C -0.26 -13.75 9.59 84.03 0.81 -12.94 16 24 H 0.07 3.63 7.85 -2.91 -0.02 3.60 16 25 C -0.05 -2.86 5.07 84.86 0.43 -2.43 16 26 N -0.94 -55.98 10.99 21.65 0.24 -55.75 16 27 Si 0.97 44.56 29.57 68.60 2.03 46.59 16 28 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 29 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 30 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 31 H 0.03 1.37 5.72 -2.39 -0.01 1.35 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.41 7.11 6.67 -92.71 -0.62 6.49 16 37 H 0.16 1.34 6.43 -2.91 -0.02 1.33 16 38 H 0.18 0.62 8.06 -2.91 -0.02 0.60 16 39 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 40 H 0.19 2.05 8.06 -2.91 -0.02 2.02 16 41 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 42 H 0.16 5.00 4.96 -3.18 -0.02 4.98 16 43 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 45 H -0.01 -0.56 7.50 -2.39 -0.02 -0.58 16 46 H 0.05 3.09 6.06 -2.39 -0.01 3.08 16 47 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -74.64 371.96 2.19 -72.45 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.38 Total: 20.93 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 5.61 Total: 1.14 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -5.77 Total: -119.80 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.05 Total: -21.30 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -74.64 2.19 -72.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947593621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.135 kcal (2) G-P(sol) polarization free energy of solvation -74.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds