Wall clock time and date at job start Tue Mar 31 2020 22:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.70477 * 2 1 4 4 C 1.53193 * 109.58700 * 239.63718 * 2 1 3 5 5 C 1.53041 * 109.30991 * 185.58247 * 4 2 1 6 6 H 1.08994 * 109.46042 * 301.35966 * 5 4 2 7 7 N 1.46498 * 109.45861 * 181.38676 * 5 4 2 8 8 C 1.34777 * 120.00343 * 155.00208 * 7 5 4 9 9 O 1.21589 * 119.99339 * 359.97438 * 8 7 5 10 10 C 1.47548 * 120.00284 * 180.02562 * 8 7 5 11 11 C 1.38691 * 120.38789 * 354.15829 * 10 8 7 12 12 C 1.38968 * 120.53215 * 179.97438 * 11 10 8 13 13 C 1.36202 * 121.24269 * 0.04812 * 12 11 10 14 14 C 1.40711 * 120.20345 * 0.23673 * 13 12 11 15 15 N 1.33688 * 120.96081 * 179.72492 * 14 13 12 16 16 C 1.31065 * 121.34958 * 180.02562 * 15 14 13 17 17 C 1.39338 * 121.70810 * 359.97438 * 16 15 14 18 18 C 1.36685 * 119.86489 * 359.44012 * 17 16 15 19 19 C 1.40471 * 118.16205 * 0.81018 * 18 17 16 20 20 C 1.53047 * 109.53994 * 61.36813 * 5 4 2 21 21 C 1.53192 * 109.30972 * 298.63342 * 20 5 4 22 22 N 1.46929 * 108.77807 * 54.63298 * 21 20 5 23 23 C 1.36937 * 120.62783 * 126.36540 * 22 21 20 24 24 H 1.08005 * 119.99627 * 209.75852 * 23 22 21 25 25 C 1.38807 * 120.00144 * 29.76365 * 23 22 21 26 26 N 1.31624 * 120.00078 * 15.29571 * 25 23 22 27 27 Si 1.86801 * 120.00204 * 195.29455 * 25 23 22 28 28 H 1.48507 * 109.46978 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.47319 * 119.99419 * 27 25 23 30 30 H 1.48493 * 109.47319 * 240.00060 * 27 25 23 31 31 H 1.08991 * 109.47422 * 180.35594 * 1 2 3 32 32 H 1.09000 * 109.47448 * 300.36306 * 1 2 3 33 33 H 1.09002 * 109.46350 * 60.35905 * 1 2 3 34 34 H 1.08997 * 109.49602 * 65.63088 * 4 2 1 35 35 H 1.09004 * 109.49792 * 305.53411 * 4 2 1 36 36 H 0.97003 * 120.00205 * 334.99492 * 7 5 4 37 37 H 1.08001 * 119.73231 * 359.97438 * 11 10 8 38 38 H 1.08000 * 119.37918 * 180.02562 * 12 11 10 39 39 H 1.08004 * 119.90293 * 179.97438 * 13 12 11 40 40 H 1.07995 * 119.14416 * 179.97438 * 16 15 14 41 41 H 1.08001 * 120.06684 * 180.02562 * 17 16 15 42 42 H 1.07994 * 120.92002 * 180.02562 * 18 17 16 43 43 H 1.08998 * 109.49770 * 58.58500 * 20 5 4 44 44 H 1.08995 * 109.49920 * 178.67852 * 20 5 4 45 45 H 1.08995 * 109.59019 * 294.84610 * 21 20 5 46 46 H 1.09000 * 109.70116 * 174.49147 * 21 20 5 47 47 H 0.96999 * 119.99808 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 3.5675 -0.8482 -1.1699 6 1 4.0062 0.1471 -1.0989 7 7 4.0653 -1.5161 -2.3750 8 6 5.3295 -1.3027 -2.7904 9 8 6.0568 -0.5554 -2.1651 10 6 5.8307 -1.9749 -4.0045 11 6 5.0512 -2.9191 -4.6561 12 6 5.5200 -3.5537 -5.8001 13 6 6.7502 -3.2702 -6.3113 14 6 7.5781 -2.3235 -5.6802 15 7 8.7904 -2.0377 -6.1659 16 6 9.5679 -1.1576 -5.5840 17 6 9.1719 -0.4773 -4.4342 18 6 7.9392 -0.7146 -3.8935 19 6 7.1127 -1.6631 -4.5183 20 6 3.9569 -1.6659 0.0638 21 6 3.4649 -0.9470 1.3240 22 7 2.0224 -0.6995 1.1946 23 6 1.1535 -1.1133 2.1687 24 1 0.1391 -1.3792 1.9099 25 6 1.5762 -1.1911 3.4885 26 7 2.6897 -0.5951 3.8591 27 14 0.5649 -2.1416 4.7388 28 1 -0.6329 -2.7148 4.0738 29 1 1.3867 -3.2393 5.3087 30 1 0.1370 -1.2270 5.8276 31 1 -0.3634 -1.0275 0.0064 32 1 -0.3634 0.5195 0.8867 33 1 -0.3632 0.5083 -0.8932 34 1 1.7661 -0.1671 -2.1368 35 1 1.6029 -1.7255 -1.2912 36 1 3.4850 -2.1120 -2.8741 37 1 4.0720 -3.1631 -4.2712 38 1 4.8973 -4.2856 -6.2928 39 1 7.0931 -3.7767 -7.2015 40 1 10.5408 -0.9544 -6.0066 41 1 9.8339 0.2430 -3.9766 42 1 7.6148 -0.1968 -3.0031 43 1 3.4982 -2.6530 0.0056 44 1 5.0411 -1.7699 0.1041 45 1 3.9902 0.0019 1.4319 46 1 3.6518 -1.5696 2.1989 47 1 2.9853 -0.6497 4.7814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947593622.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:12 Heat of formation + Delta-G solvation = 45.365011 kcal Electronic energy + Delta-G solvation = -28983.203083 eV Core-core repulsion = 25131.402486 eV Total energy + Delta-G solvation = -3851.800597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.25459 -39.63412 -37.78208 -37.10505 -34.78971 -33.48203 -32.50623 -31.62712 -30.79173 -30.39675 -29.22831 -26.43372 -25.20814 -24.62759 -23.71056 -23.39311 -21.98057 -21.06348 -20.30047 -19.35111 -18.39333 -17.75141 -17.02003 -16.48798 -16.14087 -15.90172 -15.18978 -15.06150 -15.01172 -14.45325 -14.29660 -14.00563 -13.93749 -13.70320 -13.43996 -13.25860 -13.00370 -12.81958 -12.72495 -12.35846 -11.95789 -11.63926 -11.60970 -11.26087 -11.13742 -10.96644 -10.92152 -10.70264 -10.66167 -10.33557 -10.29111 -10.15001 -10.06839 -9.78041 -9.56434 -9.24617 -9.07022 -8.86327 -8.52043 -8.42754 -6.66224 -5.79334 -3.23839 -0.08762 0.56355 1.56434 2.44401 3.13898 3.14061 3.35700 3.43600 3.45054 3.92627 4.00885 4.38985 4.43473 4.47090 4.56510 4.66018 4.83938 4.87434 5.08441 5.15308 5.25112 5.33442 5.40017 5.51377 5.53246 5.59603 5.70701 5.72144 5.89308 5.94565 5.96099 6.11077 6.11405 6.19289 6.27951 6.31561 6.38605 6.40733 6.47375 6.54286 6.60695 6.75130 6.83216 6.99662 7.06643 7.34619 7.55263 7.65213 7.66857 7.81035 8.23489 8.45070 9.20308 9.83742 10.40850 11.29360 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020802 B = 0.002457 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.707897 B =11391.164954 C =11861.813606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.135 4.135 5 C 0.150 3.850 6 H 0.084 0.916 7 N -0.713 5.713 8 C 0.557 3.443 9 O -0.533 6.533 10 C -0.106 4.106 11 C -0.078 4.078 12 C -0.110 4.110 13 C -0.070 4.070 14 C 0.118 3.882 15 N -0.481 5.481 16 C 0.132 3.868 17 C -0.181 4.181 18 C -0.058 4.058 19 C -0.068 4.068 20 C -0.147 4.147 21 C 0.175 3.825 22 N -0.587 5.587 23 C -0.251 4.251 24 H 0.070 0.930 25 C 0.003 3.997 26 N -0.901 5.901 27 Si 0.900 3.100 28 H -0.278 1.278 29 H -0.290 1.290 30 H -0.290 1.290 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.395 0.605 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.159 0.841 41 H 0.139 0.861 42 H 0.181 0.819 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.089 0.911 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.124 -3.595 -20.473 21.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.047 3.953 6 H 0.102 0.898 7 N -0.363 5.363 8 C 0.344 3.656 9 O -0.412 6.412 10 C -0.110 4.110 11 C -0.097 4.097 12 C -0.130 4.130 13 C -0.089 4.089 14 C -0.003 4.003 15 N -0.189 5.189 16 C -0.040 4.040 17 C -0.201 4.201 18 C -0.083 4.083 19 C -0.071 4.071 20 C -0.187 4.187 21 C 0.049 3.951 22 N -0.311 5.311 23 C -0.381 4.381 24 H 0.088 0.912 25 C -0.196 4.196 26 N -0.546 5.546 27 Si 0.730 3.270 28 H -0.203 1.203 29 H -0.216 1.216 30 H -0.217 1.217 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.230 0.770 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.176 0.824 41 H 0.157 0.843 42 H 0.197 0.803 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.039 0.961 46 H 0.107 0.893 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.853 -3.541 -20.595 22.324 hybrid contribution -0.879 -0.418 1.178 1.528 sum 6.974 -3.959 -19.417 21.008 Atomic orbital electron populations 1.21789 0.95710 1.01454 1.00327 1.20355 0.93108 0.93571 0.86575 0.95514 1.22396 0.93498 1.01734 0.99822 1.21126 0.94406 0.96841 0.82924 0.89779 1.46289 1.12693 1.48180 1.29120 1.18084 0.82304 0.81400 0.83830 1.90568 1.55554 1.37955 1.57121 1.20014 0.94746 0.99414 0.96781 1.21456 0.99233 0.94369 0.94675 1.20821 0.96126 1.00035 0.96038 1.20980 0.93009 0.95519 0.99403 1.18857 0.92057 0.96603 0.92791 1.68044 1.03755 1.15721 1.31400 1.23010 0.98558 0.90505 0.91922 1.22082 0.97916 1.02166 0.97940 1.22740 0.92293 0.93611 0.99639 1.18662 0.94369 0.97928 0.96116 1.22579 0.99806 0.99596 0.96718 1.20738 0.83272 0.97309 0.93799 1.44173 1.02972 1.64879 1.19064 1.19196 0.95147 1.37654 0.86091 0.91207 1.25115 0.97870 0.99578 0.97032 1.70029 1.23915 1.43940 1.16693 0.86267 0.79617 0.79576 0.81559 1.20281 1.21639 1.21748 0.92746 0.91840 0.94306 0.92614 0.91745 0.77034 0.84883 0.84525 0.84395 0.82403 0.84340 0.80266 0.92618 0.92817 0.96125 0.89274 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 7.95 37.16 0.30 -2.11 16 2 C 0.17 3.37 3.50 -67.60 -0.24 3.14 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.14 4.84 -26.61 -0.13 -2.27 16 5 C 0.15 2.49 2.42 -67.89 -0.16 2.32 16 6 H 0.08 1.57 7.58 -51.93 -0.39 1.18 16 7 N -0.71 -9.57 5.03 -54.80 -0.28 -9.85 16 8 C 0.56 8.14 7.69 -12.46 -0.10 8.05 16 9 O -0.53 -9.37 13.07 5.29 0.07 -9.30 16 10 C -0.11 -1.31 5.90 -104.66 -0.62 -1.93 16 11 C -0.08 -0.73 9.51 -39.14 -0.37 -1.10 16 12 C -0.11 -0.89 9.92 -40.04 -0.40 -1.29 16 13 C -0.07 -0.67 9.96 -39.38 -0.39 -1.07 16 14 C 0.12 1.45 6.60 -84.88 -0.56 0.89 16 15 N -0.48 -5.79 10.34 -10.99 -0.11 -5.90 16 16 C 0.13 1.31 11.15 -17.47 -0.19 1.12 16 17 C -0.18 -1.86 10.04 -39.73 -0.40 -2.26 16 18 C -0.06 -0.75 9.29 -39.30 -0.37 -1.11 16 19 C -0.07 -0.89 5.76 -106.53 -0.61 -1.51 16 20 C -0.15 -2.82 5.65 -26.61 -0.15 -2.97 16 21 C 0.18 4.13 5.29 -3.71 -0.02 4.11 16 22 N -0.59 -14.01 2.99 -164.77 -0.49 -14.50 16 23 C -0.25 -6.55 8.58 -15.06 -0.13 -6.68 16 24 H 0.07 1.77 6.22 -52.48 -0.33 1.45 16 25 C 0.00 0.08 4.94 -17.43 -0.09 -0.01 16 26 N -0.90 -25.83 11.21 55.49 0.62 -25.21 16 27 Si 0.90 21.29 29.58 -169.99 -5.03 16.26 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 31 H 0.05 0.97 7.40 -51.93 -0.38 0.59 16 32 H 0.06 1.23 7.67 -51.93 -0.40 0.84 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.39 4.09 6.67 -40.82 -0.27 3.82 16 37 H 0.13 0.90 6.42 -52.49 -0.34 0.56 16 38 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 40 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.18 2.58 4.96 -52.51 -0.26 2.32 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 2.37 6.12 -51.93 -0.32 2.05 16 47 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 373.10 15.07 5.62 5.62 Total: -1.00 -31.80 373.10 -10.70 -42.50 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.48 Total: 5.07 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -4.63 Total: -4.68 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.26 Total: -55.46 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.07 Total: -9.30 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.80 -10.70 -42.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947593622.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.862 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds