Wall clock time and date at job start Tue Mar 31 2020 22:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.70477 * 2 1 4 4 C 1.53193 * 109.58700 * 239.63718 * 2 1 3 5 5 C 1.53041 * 109.30991 * 185.58247 * 4 2 1 6 6 H 1.08994 * 109.46042 * 301.35966 * 5 4 2 7 7 N 1.46498 * 109.45861 * 181.38676 * 5 4 2 8 8 C 1.34777 * 120.00343 * 155.00208 * 7 5 4 9 9 O 1.21589 * 119.99339 * 359.97438 * 8 7 5 10 10 C 1.47548 * 120.00284 * 180.02562 * 8 7 5 11 11 C 1.38691 * 120.38789 * 354.15829 * 10 8 7 12 12 C 1.38968 * 120.53215 * 179.97438 * 11 10 8 13 13 C 1.36202 * 121.24269 * 0.04812 * 12 11 10 14 14 C 1.40711 * 120.20345 * 0.23673 * 13 12 11 15 15 N 1.33688 * 120.96081 * 179.72492 * 14 13 12 16 16 C 1.31065 * 121.34958 * 180.02562 * 15 14 13 17 17 C 1.39338 * 121.70810 * 359.97438 * 16 15 14 18 18 C 1.36685 * 119.86489 * 359.44012 * 17 16 15 19 19 C 1.40471 * 118.16205 * 0.81018 * 18 17 16 20 20 C 1.53047 * 109.53994 * 61.36813 * 5 4 2 21 21 C 1.53192 * 109.30972 * 298.63342 * 20 5 4 22 22 N 1.46929 * 108.77807 * 54.63298 * 21 20 5 23 23 C 1.36937 * 120.62783 * 126.36540 * 22 21 20 24 24 H 1.08005 * 119.99627 * 209.75852 * 23 22 21 25 25 C 1.38807 * 120.00144 * 29.76365 * 23 22 21 26 26 N 1.31624 * 120.00078 * 15.29571 * 25 23 22 27 27 Si 1.86801 * 120.00204 * 195.29455 * 25 23 22 28 28 H 1.48507 * 109.46978 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.47319 * 119.99419 * 27 25 23 30 30 H 1.48493 * 109.47319 * 240.00060 * 27 25 23 31 31 H 1.08991 * 109.47422 * 180.35594 * 1 2 3 32 32 H 1.09000 * 109.47448 * 300.36306 * 1 2 3 33 33 H 1.09002 * 109.46350 * 60.35905 * 1 2 3 34 34 H 1.08997 * 109.49602 * 65.63088 * 4 2 1 35 35 H 1.09004 * 109.49792 * 305.53411 * 4 2 1 36 36 H 0.97003 * 120.00205 * 334.99492 * 7 5 4 37 37 H 1.08001 * 119.73231 * 359.97438 * 11 10 8 38 38 H 1.08000 * 119.37918 * 180.02562 * 12 11 10 39 39 H 1.08004 * 119.90293 * 179.97438 * 13 12 11 40 40 H 1.07995 * 119.14416 * 179.97438 * 16 15 14 41 41 H 1.08001 * 120.06684 * 180.02562 * 17 16 15 42 42 H 1.07994 * 120.92002 * 180.02562 * 18 17 16 43 43 H 1.08998 * 109.49770 * 58.58500 * 20 5 4 44 44 H 1.08995 * 109.49920 * 178.67852 * 20 5 4 45 45 H 1.08995 * 109.59019 * 294.84610 * 21 20 5 46 46 H 1.09000 * 109.70116 * 174.49147 * 21 20 5 47 47 H 0.96999 * 119.99808 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 3.5675 -0.8482 -1.1699 6 1 4.0062 0.1471 -1.0989 7 7 4.0653 -1.5161 -2.3750 8 6 5.3295 -1.3027 -2.7904 9 8 6.0568 -0.5554 -2.1651 10 6 5.8307 -1.9749 -4.0045 11 6 5.0512 -2.9191 -4.6561 12 6 5.5200 -3.5537 -5.8001 13 6 6.7502 -3.2702 -6.3113 14 6 7.5781 -2.3235 -5.6802 15 7 8.7904 -2.0377 -6.1659 16 6 9.5679 -1.1576 -5.5840 17 6 9.1719 -0.4773 -4.4342 18 6 7.9392 -0.7146 -3.8935 19 6 7.1127 -1.6631 -4.5183 20 6 3.9569 -1.6659 0.0638 21 6 3.4649 -0.9470 1.3240 22 7 2.0224 -0.6995 1.1946 23 6 1.1535 -1.1133 2.1687 24 1 0.1391 -1.3792 1.9099 25 6 1.5762 -1.1911 3.4885 26 7 2.6897 -0.5951 3.8591 27 14 0.5649 -2.1416 4.7388 28 1 -0.6329 -2.7148 4.0738 29 1 1.3867 -3.2393 5.3087 30 1 0.1370 -1.2270 5.8276 31 1 -0.3634 -1.0275 0.0064 32 1 -0.3634 0.5195 0.8867 33 1 -0.3632 0.5083 -0.8932 34 1 1.7661 -0.1671 -2.1368 35 1 1.6029 -1.7255 -1.2912 36 1 3.4850 -2.1120 -2.8741 37 1 4.0720 -3.1631 -4.2712 38 1 4.8973 -4.2856 -6.2928 39 1 7.0931 -3.7767 -7.2015 40 1 10.5408 -0.9544 -6.0066 41 1 9.8339 0.2430 -3.9766 42 1 7.6148 -0.1968 -3.0031 43 1 3.4982 -2.6530 0.0056 44 1 5.0411 -1.7699 0.1041 45 1 3.9902 0.0019 1.4319 46 1 3.6518 -1.5696 2.1989 47 1 2.9853 -0.6497 4.7814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947593622.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:11 Heat of formation + Delta-G solvation = 25.847740 kcal Electronic energy + Delta-G solvation = -28984.049415 eV Core-core repulsion = 25131.402486 eV Total energy + Delta-G solvation = -3852.646929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.12821 -40.78394 -39.27151 -37.92509 -36.23560 -34.34676 -34.25804 -33.10425 -31.77756 -31.55201 -30.56246 -27.97892 -26.77928 -25.66465 -24.63442 -24.38531 -23.57839 -22.35761 -21.61136 -20.91183 -19.29950 -18.64686 -18.22395 -17.86884 -17.27748 -17.09106 -16.85103 -16.18047 -15.84252 -15.72879 -15.59297 -15.35156 -15.20218 -14.98316 -14.73594 -14.55138 -14.32973 -14.11626 -13.86349 -13.33084 -13.07321 -12.96120 -12.76141 -12.72367 -12.66136 -12.60229 -12.36096 -12.33310 -12.06323 -11.84179 -11.71686 -11.54686 -11.50050 -11.37782 -11.11850 -10.56496 -10.30235 -10.10625 -9.83045 -9.32678 -8.63995 -7.83548 -5.30367 -0.90266 -0.20719 0.66376 1.46698 1.48982 1.58653 1.64699 2.01812 2.17056 2.52861 3.09447 3.30316 3.32829 3.48584 3.61364 3.73150 3.80263 3.83969 3.89694 4.05300 4.06218 4.15539 4.26725 4.38703 4.41692 4.45299 4.61567 4.70393 4.74833 4.76852 4.78478 4.82051 4.96122 5.02670 5.06176 5.07111 5.15830 5.19631 5.24103 5.32247 5.39218 5.48390 5.52687 5.56567 5.59965 5.71725 5.74069 5.78653 6.43811 6.49425 6.83975 7.16848 7.17632 7.89333 8.42274 9.23985 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020802 B = 0.002457 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.707897 B =11391.164954 C =11861.813606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.159 3.841 3 H 0.010 0.990 4 C -0.118 4.118 5 C 0.163 3.837 6 H 0.058 0.942 7 N -0.699 5.699 8 C 0.555 3.445 9 O -0.572 6.572 10 C -0.137 4.137 11 C -0.058 4.058 12 C -0.102 4.102 13 C -0.070 4.070 14 C 0.095 3.905 15 N -0.495 5.495 16 C 0.128 3.872 17 C -0.173 4.173 18 C -0.091 4.091 19 C -0.087 4.087 20 C -0.130 4.130 21 C 0.184 3.816 22 N -0.603 5.603 23 C -0.246 4.246 24 H 0.081 0.919 25 C -0.058 4.058 26 N -0.941 5.941 27 Si 0.963 3.037 28 H -0.260 1.260 29 H -0.296 1.296 30 H -0.297 1.297 31 H 0.056 0.944 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.414 0.586 37 H 0.164 0.836 38 H 0.180 0.820 39 H 0.159 0.841 40 H 0.194 0.806 41 H 0.162 0.838 42 H 0.157 0.843 43 H 0.063 0.937 44 H 0.043 0.957 45 H -0.014 1.014 46 H 0.054 0.946 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.531 -5.663 -24.028 25.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.053 3.947 3 H 0.028 0.972 4 C -0.157 4.157 5 C 0.058 3.942 6 H 0.076 0.924 7 N -0.350 5.350 8 C 0.344 3.656 9 O -0.454 6.454 10 C -0.141 4.141 11 C -0.076 4.076 12 C -0.121 4.121 13 C -0.089 4.089 14 C -0.026 4.026 15 N -0.203 5.203 16 C -0.044 4.044 17 C -0.193 4.193 18 C -0.116 4.116 19 C -0.090 4.090 20 C -0.170 4.170 21 C 0.057 3.943 22 N -0.327 5.327 23 C -0.376 4.376 24 H 0.099 0.901 25 C -0.252 4.252 26 N -0.588 5.588 27 Si 0.791 3.209 28 H -0.184 1.184 29 H -0.223 1.223 30 H -0.224 1.224 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.253 0.747 37 H 0.181 0.819 38 H 0.197 0.803 39 H 0.176 0.824 40 H 0.211 0.789 41 H 0.180 0.820 42 H 0.174 0.826 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.004 0.996 46 H 0.072 0.928 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.218 -5.632 -24.211 25.623 hybrid contribution -0.327 0.266 2.187 2.227 sum 5.891 -5.366 -22.024 23.422 Atomic orbital electron populations 1.21708 0.93792 1.01779 1.01131 1.20646 0.94764 0.92858 0.86465 0.97211 1.22197 0.92146 1.02499 0.98895 1.20711 0.95175 0.95248 0.83063 0.92361 1.45927 1.12764 1.48278 1.28037 1.18519 0.82039 0.80809 0.84259 1.90573 1.56609 1.39704 1.58520 1.19849 0.95570 1.01721 0.96931 1.21877 0.99649 0.92046 0.94060 1.21270 0.95804 0.99870 0.95152 1.21354 0.93243 0.94548 0.99752 1.19238 0.92759 0.97622 0.92991 1.68099 1.04018 1.16378 1.31836 1.23573 0.99624 0.89661 0.91516 1.22368 0.97138 1.01974 0.97780 1.22657 0.94012 0.95019 0.99955 1.18859 0.94927 0.98346 0.96826 1.22307 0.98983 0.99681 0.96046 1.20427 0.83724 0.95396 0.94731 1.44434 1.02572 1.65579 1.20070 1.19584 0.95635 1.35908 0.86465 0.90113 1.25887 0.99140 1.01130 0.99089 1.70206 1.25965 1.46153 1.16503 0.85267 0.78616 0.77856 0.79113 1.18418 1.22285 1.22439 0.92478 0.94246 0.90407 0.89119 0.90226 0.74732 0.81872 0.80307 0.82389 0.78878 0.82041 0.82565 0.91787 0.93831 0.99553 0.92797 0.94490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 7.95 71.98 0.57 -3.65 16 2 C 0.16 6.12 3.50 44.98 0.16 6.28 16 3 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 4 C -0.12 -3.44 4.84 30.67 0.15 -3.29 16 5 C 0.16 5.31 2.42 45.02 0.11 5.42 16 6 H 0.06 2.24 7.58 -2.39 -0.02 2.23 16 7 N -0.70 -17.63 5.03 -445.56 -2.24 -19.87 16 8 C 0.55 16.25 7.69 86.70 0.67 16.92 16 9 O -0.57 -21.35 13.07 -4.00 -0.05 -21.40 16 10 C -0.14 -3.28 5.90 -19.89 -0.12 -3.40 16 11 C -0.06 -0.87 9.51 22.55 0.21 -0.66 16 12 C -0.10 -1.20 9.92 21.97 0.22 -0.98 16 13 C -0.07 -1.14 9.96 22.40 0.22 -0.92 16 14 C 0.09 2.21 6.60 40.27 0.27 2.48 16 15 N -0.49 -11.29 10.34 -188.68 -1.95 -13.24 16 16 C 0.13 2.40 11.15 85.07 0.95 3.34 16 17 C -0.17 -3.55 10.04 22.17 0.22 -3.33 16 18 C -0.09 -2.48 9.29 22.45 0.21 -2.27 16 19 C -0.09 -2.29 5.76 -21.10 -0.12 -2.41 16 20 C -0.13 -5.10 5.65 30.67 0.17 -4.93 16 21 C 0.18 9.14 5.29 86.36 0.46 9.60 16 22 N -0.60 -29.23 2.99 -675.22 -2.02 -31.25 16 23 C -0.25 -12.90 8.58 84.03 0.72 -12.18 16 24 H 0.08 4.01 6.22 -2.91 -0.02 4.00 16 25 C -0.06 -3.21 4.94 84.86 0.42 -2.79 16 26 N -0.94 -56.60 11.21 21.65 0.24 -56.36 16 27 Si 0.96 44.56 29.58 68.60 2.03 46.59 16 28 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 29 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 30 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 31 H 0.06 1.87 7.40 -2.39 -0.02 1.85 16 32 H 0.04 1.48 7.67 -2.39 -0.02 1.46 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.41 7.07 6.67 -92.71 -0.62 6.46 16 37 H 0.16 1.38 6.42 -2.91 -0.02 1.36 16 38 H 0.18 0.63 8.06 -2.91 -0.02 0.61 16 39 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.19 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 42 H 0.16 4.96 4.96 -3.22 -0.02 4.95 16 43 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 45 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 46 H 0.05 3.04 6.12 -2.39 -0.01 3.03 16 47 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -75.30 373.10 1.88 -73.42 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.38 Total: 18.87 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 5.49 Total: 3.24 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -5.96 Total: -120.71 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.05 Total: -21.40 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -75.30 1.88 -73.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947593622.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.267 kcal (2) G-P(sol) polarization free energy of solvation -75.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds