Wall clock time and date at job start Tue Mar 31 2020 22:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.58965 * 2 1 4 4 C 1.53192 * 109.70851 * 239.63928 * 2 1 3 5 5 C 1.53040 * 109.31653 * 185.50704 * 4 2 1 6 6 H 1.08998 * 109.44695 * 181.37869 * 5 4 2 7 7 N 1.46497 * 109.45865 * 301.34701 * 5 4 2 8 8 C 1.34784 * 119.99718 * 205.06872 * 7 5 4 9 9 O 1.21543 * 119.99837 * 359.97438 * 8 7 5 10 10 C 1.47944 * 119.99948 * 180.02562 * 8 7 5 11 11 N 1.32201 * 120.15744 * 353.84412 * 10 8 7 12 12 C 1.32028 * 122.68339 * 180.27453 * 11 10 8 13 13 C 1.36693 * 122.02851 * 0.02562 * 12 11 10 14 14 C 1.40534 * 118.84416 * 359.97438 * 13 12 11 15 15 C 1.40317 * 122.21703 * 180.02562 * 14 13 12 16 16 C 1.36200 * 119.45534 * 180.02562 * 15 14 13 17 17 C 1.39384 * 120.99888 * 359.97438 * 16 15 14 18 18 C 1.36257 * 121.08327 * 359.97399 * 17 16 15 19 19 C 1.40088 * 119.53838 * 0.02621 * 18 17 16 20 20 C 1.53039 * 109.53709 * 61.36472 * 5 4 2 21 21 C 1.53198 * 109.31539 * 298.63778 * 20 5 4 22 22 N 1.46925 * 108.77316 * 54.63122 * 21 20 5 23 23 C 1.36943 * 120.62552 * 126.37440 * 22 21 20 24 24 H 1.08003 * 119.99653 * 214.63533 * 23 22 21 25 25 C 1.38807 * 120.00028 * 34.64086 * 23 22 21 26 26 N 1.31620 * 120.00297 * 5.86903 * 25 23 22 27 27 Si 1.86803 * 119.99984 * 185.87930 * 25 23 22 28 28 H 1.48500 * 109.46750 * 359.97438 * 27 25 23 29 29 H 1.48492 * 109.47553 * 119.99567 * 27 25 23 30 30 H 1.48503 * 109.46968 * 239.99836 * 27 25 23 31 31 H 1.09002 * 109.47434 * 299.72271 * 1 2 3 32 32 H 1.08996 * 109.46823 * 59.72080 * 1 2 3 33 33 H 1.08999 * 109.47222 * 179.72326 * 1 2 3 34 34 H 1.09006 * 109.49674 * 65.55417 * 4 2 1 35 35 H 1.09001 * 109.49473 * 305.46161 * 4 2 1 36 36 H 0.96998 * 120.00752 * 25.06742 * 7 5 4 37 37 H 1.07997 * 118.98752 * 179.97438 * 12 11 10 38 38 H 1.07996 * 120.57930 * 180.02562 * 13 12 11 39 39 H 1.08000 * 120.27135 * 0.04182 * 15 14 13 40 40 H 1.08006 * 119.50166 * 179.97438 * 16 15 14 41 41 H 1.07998 * 119.45562 * 180.02562 * 17 16 15 42 42 H 1.07998 * 120.22968 * 179.97438 * 18 17 16 43 43 H 1.09006 * 109.49714 * 58.58853 * 20 5 4 44 44 H 1.09000 * 109.49888 * 178.68062 * 20 5 4 45 45 H 1.08995 * 109.58676 * 174.42420 * 21 20 5 46 46 H 1.09002 * 109.58123 * 294.70330 * 21 20 5 47 47 H 0.96996 * 120.00458 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0466 -0.7289 -1.2444 5 6 3.5707 -0.8444 -1.1673 6 1 3.9428 -1.3410 -2.0633 7 7 4.1573 0.4946 -1.0720 8 6 5.4211 0.7079 -1.4892 9 8 6.0740 -0.2108 -1.9441 10 6 6.0137 2.0600 -1.3925 11 7 5.2707 3.0852 -1.0123 12 6 5.7464 4.3129 -0.9140 13 6 7.0493 4.6106 -1.2012 14 6 7.9063 3.5758 -1.6130 15 6 9.2557 3.8016 -1.9248 16 6 10.0358 2.7570 -2.3189 17 6 9.5142 1.4681 -2.4163 18 6 8.2089 1.2133 -2.1201 19 6 7.3758 2.2628 -1.7113 20 6 3.9603 -1.6607 0.0672 21 6 3.4654 -0.9423 1.3266 22 7 2.0225 -0.6979 1.1954 23 6 1.1533 -1.1132 2.1687 24 1 0.1652 -1.4562 1.8996 25 6 1.5421 -1.0931 3.5011 26 7 2.7004 -0.5684 3.8408 27 14 0.4217 -1.8112 4.8120 28 1 -0.8132 -2.3350 4.1748 29 1 1.1243 -2.9158 5.5129 30 1 0.0629 -0.7531 5.7902 31 1 -0.3634 0.5095 0.8925 32 1 -0.3633 0.5182 -0.8874 33 1 -0.3633 -1.0276 -0.0050 34 1 1.7689 -0.1674 -2.1365 35 1 1.6080 -1.7258 -1.2903 36 1 3.6363 1.2277 -0.7087 37 1 5.0857 5.1064 -0.5977 38 1 7.4138 5.6233 -1.1124 39 1 9.6722 4.7954 -1.8527 40 1 11.0745 2.9300 -2.5595 41 1 10.1554 0.6581 -2.7309 42 1 7.8190 0.2094 -2.2007 43 1 3.5037 -2.6488 0.0089 44 1 5.0447 -1.7624 0.1088 45 1 3.6524 -1.5663 2.2005 46 1 3.9904 0.0066 1.4361 47 1 2.9720 -0.5540 4.7719 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947666216.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:19 Heat of formation + Delta-G solvation = 45.973224 kcal Electronic energy + Delta-G solvation = -29655.547966 eV Core-core repulsion = 25803.773743 eV Total energy + Delta-G solvation = -3851.774223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.18138 -39.47114 -37.62046 -37.45307 -34.32982 -33.08224 -32.31133 -31.34903 -31.18414 -29.98657 -29.27098 -26.38863 -25.31358 -24.74556 -23.63679 -22.99791 -21.93011 -21.02600 -20.55132 -18.71180 -18.23621 -17.50702 -17.19226 -16.37186 -15.88543 -15.52400 -15.25817 -15.08151 -14.65251 -14.54617 -14.10849 -13.85054 -13.77580 -13.68370 -13.41216 -13.12419 -12.95750 -12.73486 -12.42380 -12.22208 -11.96662 -11.80537 -11.54656 -11.37682 -11.16161 -10.96528 -10.67968 -10.59559 -10.37569 -10.28261 -10.10469 -10.01390 -9.96000 -9.66750 -9.34105 -9.30318 -9.25375 -8.64666 -8.43300 -8.17534 -6.51302 -5.74701 -3.26229 -0.01757 0.76495 1.63326 2.67533 3.22150 3.31679 3.37503 3.45277 3.46613 4.04920 4.15814 4.42514 4.49611 4.64408 4.66211 4.75496 4.97487 5.08002 5.18017 5.30007 5.37547 5.39843 5.43758 5.58908 5.63877 5.69423 5.70803 5.88751 5.96458 6.02366 6.16379 6.21674 6.26440 6.35370 6.36183 6.40856 6.47633 6.51606 6.61343 6.65514 6.72421 6.83252 6.99644 7.07119 7.11062 7.44023 7.60253 7.77033 7.84544 7.91987 8.43561 8.53555 9.26690 9.87450 10.47082 11.32787 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016289 B = 0.002983 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.571184 B = 9384.615686 C = 9588.740661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.167 3.833 3 H 0.022 0.978 4 C -0.139 4.139 5 C 0.151 3.849 6 H 0.075 0.925 7 N -0.684 5.684 8 C 0.571 3.429 9 O -0.540 6.540 10 C 0.131 3.869 11 N -0.454 5.454 12 C 0.078 3.922 13 C -0.138 4.138 14 C -0.030 4.030 15 C -0.122 4.122 16 C -0.095 4.095 17 C -0.128 4.128 18 C -0.086 4.086 19 C -0.073 4.073 20 C -0.154 4.154 21 C 0.176 3.824 22 N -0.587 5.587 23 C -0.250 4.250 24 H 0.067 0.933 25 C 0.007 3.993 26 N -0.903 5.903 27 Si 0.901 3.099 28 H -0.278 1.278 29 H -0.290 1.290 30 H -0.290 1.290 31 H 0.062 0.938 32 H 0.037 0.963 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.413 0.587 37 H 0.160 0.840 38 H 0.141 0.859 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.174 0.826 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.086 0.914 46 H 0.018 0.982 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.643 8.857 -13.327 19.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.060 3.940 3 H 0.040 0.960 4 C -0.178 4.178 5 C 0.047 3.953 6 H 0.093 0.907 7 N -0.334 5.334 8 C 0.355 3.645 9 O -0.418 6.418 10 C -0.021 4.021 11 N -0.165 5.165 12 C -0.068 4.068 13 C -0.157 4.157 14 C -0.036 4.036 15 C -0.140 4.140 16 C -0.114 4.114 17 C -0.146 4.146 18 C -0.105 4.105 19 C -0.076 4.076 20 C -0.195 4.195 21 C 0.050 3.950 22 N -0.310 5.310 23 C -0.379 4.379 24 H 0.085 0.915 25 C -0.192 4.192 26 N -0.547 5.547 27 Si 0.731 3.269 28 H -0.203 1.203 29 H -0.217 1.217 30 H -0.217 1.217 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.251 0.749 37 H 0.178 0.822 38 H 0.159 0.841 39 H 0.149 0.851 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.191 0.809 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.104 0.896 46 H 0.036 0.964 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.203 8.170 -13.228 18.596 hybrid contribution 0.247 0.422 0.887 1.013 sum 10.450 8.592 -12.341 18.312 Atomic orbital electron populations 1.21782 0.95836 1.01398 1.00269 1.20411 0.93165 0.93278 0.87162 0.96018 1.22368 0.93705 1.02374 0.99400 1.21007 0.93307 0.81945 0.99017 0.90684 1.46063 1.13263 1.13172 1.60931 1.17698 0.82332 0.86000 0.78462 1.90542 1.60295 1.43486 1.47507 1.21501 0.90352 0.93586 0.96636 1.67313 1.39023 0.99822 1.10369 1.22221 0.94029 0.93275 0.97304 1.22122 0.94731 0.99612 0.99281 1.18199 0.94706 0.92565 0.98095 1.20896 0.92227 0.99696 1.01164 1.21056 0.99933 0.92965 0.97435 1.21105 0.95936 0.96898 1.00659 1.22224 0.92979 1.01457 0.93844 1.18716 0.93917 0.94099 1.00896 1.22590 0.99922 0.99439 0.97500 1.20721 0.83272 0.97100 0.93873 1.44077 1.02832 1.65020 1.19112 1.19157 0.97148 1.36271 0.85372 0.91526 1.25271 0.97249 0.99205 0.97498 1.69967 1.20947 1.47358 1.16436 0.86247 0.80331 0.78304 0.82047 1.20256 1.21708 1.21715 0.91913 0.94368 0.92793 0.92545 0.90565 0.74898 0.82235 0.84105 0.85136 0.85678 0.85487 0.80896 0.91673 0.92782 0.89560 0.96418 0.93756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.00 37.16 0.30 -2.18 16 2 C 0.17 3.32 3.19 -67.60 -0.22 3.10 16 3 H 0.02 0.45 6.64 -51.93 -0.34 0.11 16 4 C -0.14 -2.35 5.08 -26.61 -0.14 -2.48 16 5 C 0.15 2.66 2.78 -67.89 -0.19 2.47 16 6 H 0.08 1.28 7.58 -51.93 -0.39 0.89 16 7 N -0.68 -11.90 4.26 -54.68 -0.23 -12.14 16 8 C 0.57 9.94 7.74 -12.28 -0.10 9.84 16 9 O -0.54 -9.91 13.11 5.33 0.07 -9.84 16 10 C 0.13 2.10 6.81 -82.55 -0.56 1.54 16 11 N -0.45 -6.88 9.52 -9.81 -0.09 -6.97 16 12 C 0.08 0.93 11.06 -18.03 -0.20 0.73 16 13 C -0.14 -1.44 9.88 -39.28 -0.39 -1.82 16 14 C -0.03 -0.37 5.75 -106.82 -0.61 -0.98 16 15 C -0.12 -1.18 9.82 -39.53 -0.39 -1.56 16 16 C -0.09 -0.87 9.95 -39.89 -0.40 -1.27 16 17 C -0.13 -1.37 9.95 -39.87 -0.40 -1.77 16 18 C -0.09 -1.18 9.23 -39.60 -0.37 -1.54 16 19 C -0.07 -1.07 5.76 -106.60 -0.61 -1.68 16 20 C -0.15 -3.07 5.77 -26.61 -0.15 -3.23 16 21 C 0.18 4.20 4.96 -3.71 -0.02 4.18 16 22 N -0.59 -14.11 2.98 -164.77 -0.49 -14.60 16 23 C -0.25 -6.58 8.44 -15.06 -0.13 -6.71 16 24 H 0.07 1.72 6.37 -52.48 -0.33 1.39 16 25 C 0.01 0.18 5.14 -17.43 -0.09 0.09 16 26 N -0.90 -25.99 11.03 55.49 0.61 -25.38 16 27 Si 0.90 21.51 29.56 -169.99 -5.02 16.48 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 31 H 0.06 1.25 7.67 -51.93 -0.40 0.85 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 1.00 7.41 -51.93 -0.38 0.61 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.41 7.31 6.23 -40.82 -0.25 7.06 16 37 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 39 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 41 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.17 2.60 4.97 -52.49 -0.26 2.34 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.09 2.34 6.21 -51.93 -0.32 2.02 16 46 H 0.02 0.45 7.74 -51.93 -0.40 0.05 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -30.73 371.22 -10.67 -41.40 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -6.46 Total: 8.73 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -4.65 Total: -3.28 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.20 Total: -59.09 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.73 -10.67 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947666216.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.378 kcal (2) G-P(sol) polarization free energy of solvation -30.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds