Wall clock time and date at job start Tue Mar 31 2020 22:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.58965 * 2 1 4 4 C 1.53192 * 109.70851 * 239.63928 * 2 1 3 5 5 C 1.53040 * 109.31653 * 185.50704 * 4 2 1 6 6 H 1.08998 * 109.44695 * 181.37869 * 5 4 2 7 7 N 1.46497 * 109.45865 * 301.34701 * 5 4 2 8 8 C 1.34784 * 119.99718 * 205.06872 * 7 5 4 9 9 O 1.21543 * 119.99837 * 359.97438 * 8 7 5 10 10 C 1.47944 * 119.99948 * 180.02562 * 8 7 5 11 11 N 1.32201 * 120.15744 * 353.84412 * 10 8 7 12 12 C 1.32028 * 122.68339 * 180.27453 * 11 10 8 13 13 C 1.36693 * 122.02851 * 0.02562 * 12 11 10 14 14 C 1.40534 * 118.84416 * 359.97438 * 13 12 11 15 15 C 1.40317 * 122.21703 * 180.02562 * 14 13 12 16 16 C 1.36200 * 119.45534 * 180.02562 * 15 14 13 17 17 C 1.39384 * 120.99888 * 359.97438 * 16 15 14 18 18 C 1.36257 * 121.08327 * 359.97399 * 17 16 15 19 19 C 1.40088 * 119.53838 * 0.02621 * 18 17 16 20 20 C 1.53039 * 109.53709 * 61.36472 * 5 4 2 21 21 C 1.53198 * 109.31539 * 298.63778 * 20 5 4 22 22 N 1.46925 * 108.77316 * 54.63122 * 21 20 5 23 23 C 1.36943 * 120.62552 * 126.37440 * 22 21 20 24 24 H 1.08003 * 119.99653 * 214.63533 * 23 22 21 25 25 C 1.38807 * 120.00028 * 34.64086 * 23 22 21 26 26 N 1.31620 * 120.00297 * 5.86903 * 25 23 22 27 27 Si 1.86803 * 119.99984 * 185.87930 * 25 23 22 28 28 H 1.48500 * 109.46750 * 359.97438 * 27 25 23 29 29 H 1.48492 * 109.47553 * 119.99567 * 27 25 23 30 30 H 1.48503 * 109.46968 * 239.99836 * 27 25 23 31 31 H 1.09002 * 109.47434 * 299.72271 * 1 2 3 32 32 H 1.08996 * 109.46823 * 59.72080 * 1 2 3 33 33 H 1.08999 * 109.47222 * 179.72326 * 1 2 3 34 34 H 1.09006 * 109.49674 * 65.55417 * 4 2 1 35 35 H 1.09001 * 109.49473 * 305.46161 * 4 2 1 36 36 H 0.96998 * 120.00752 * 25.06742 * 7 5 4 37 37 H 1.07997 * 118.98752 * 179.97438 * 12 11 10 38 38 H 1.07996 * 120.57930 * 180.02562 * 13 12 11 39 39 H 1.08000 * 120.27135 * 0.04182 * 15 14 13 40 40 H 1.08006 * 119.50166 * 179.97438 * 16 15 14 41 41 H 1.07998 * 119.45562 * 180.02562 * 17 16 15 42 42 H 1.07998 * 120.22968 * 179.97438 * 18 17 16 43 43 H 1.09006 * 109.49714 * 58.58853 * 20 5 4 44 44 H 1.09000 * 109.49888 * 178.68062 * 20 5 4 45 45 H 1.08995 * 109.58676 * 174.42420 * 21 20 5 46 46 H 1.09002 * 109.58123 * 294.70330 * 21 20 5 47 47 H 0.96996 * 120.00458 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0466 -0.7289 -1.2444 5 6 3.5707 -0.8444 -1.1673 6 1 3.9428 -1.3410 -2.0633 7 7 4.1573 0.4946 -1.0720 8 6 5.4211 0.7079 -1.4892 9 8 6.0740 -0.2108 -1.9441 10 6 6.0137 2.0600 -1.3925 11 7 5.2707 3.0852 -1.0123 12 6 5.7464 4.3129 -0.9140 13 6 7.0493 4.6106 -1.2012 14 6 7.9063 3.5758 -1.6130 15 6 9.2557 3.8016 -1.9248 16 6 10.0358 2.7570 -2.3189 17 6 9.5142 1.4681 -2.4163 18 6 8.2089 1.2133 -2.1201 19 6 7.3758 2.2628 -1.7113 20 6 3.9603 -1.6607 0.0672 21 6 3.4654 -0.9423 1.3266 22 7 2.0225 -0.6979 1.1954 23 6 1.1533 -1.1132 2.1687 24 1 0.1652 -1.4562 1.8996 25 6 1.5421 -1.0931 3.5011 26 7 2.7004 -0.5684 3.8408 27 14 0.4217 -1.8112 4.8120 28 1 -0.8132 -2.3350 4.1748 29 1 1.1243 -2.9158 5.5129 30 1 0.0629 -0.7531 5.7902 31 1 -0.3634 0.5095 0.8925 32 1 -0.3633 0.5182 -0.8874 33 1 -0.3633 -1.0276 -0.0050 34 1 1.7689 -0.1674 -2.1365 35 1 1.6080 -1.7258 -1.2903 36 1 3.6363 1.2277 -0.7087 37 1 5.0857 5.1064 -0.5977 38 1 7.4138 5.6233 -1.1124 39 1 9.6722 4.7954 -1.8527 40 1 11.0745 2.9300 -2.5595 41 1 10.1554 0.6581 -2.7309 42 1 7.8190 0.2094 -2.2007 43 1 3.5037 -2.6488 0.0089 44 1 5.0447 -1.7624 0.1088 45 1 3.6524 -1.5663 2.2005 46 1 3.9904 0.0066 1.4361 47 1 2.9720 -0.5540 4.7719 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947666216.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:18 Heat of formation + Delta-G solvation = 28.185752 kcal Electronic energy + Delta-G solvation = -29656.319288 eV Core-core repulsion = 25803.773743 eV Total energy + Delta-G solvation = -3852.545545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.18663 -40.80007 -39.13998 -38.36343 -35.95945 -34.15146 -33.97793 -32.84765 -32.15872 -31.52212 -30.43896 -28.02128 -26.89250 -26.08033 -24.52083 -24.08170 -23.58082 -22.35274 -22.06504 -20.29180 -19.34138 -18.50597 -18.22266 -18.07485 -17.13292 -16.80225 -16.73726 -16.46068 -15.84160 -15.79398 -15.56391 -15.42289 -15.08310 -14.78727 -14.68103 -14.46716 -14.23550 -14.08263 -13.87841 -13.34638 -13.17922 -13.14214 -12.85968 -12.72712 -12.69253 -12.46509 -12.45845 -12.29866 -12.15022 -11.94776 -11.69687 -11.43195 -11.19587 -11.07418 -11.01617 -10.51630 -10.45455 -10.14598 -10.07293 -9.06358 -8.50721 -7.81121 -5.35028 -0.96875 -0.11646 0.70848 1.46146 1.47959 1.57600 1.62153 2.04882 2.23633 2.52363 3.08507 3.09985 3.35277 3.59840 3.63742 3.70185 3.81454 3.90012 3.94251 4.07717 4.17259 4.22240 4.28571 4.41850 4.43510 4.48468 4.61400 4.67462 4.73043 4.79517 4.82738 4.92803 4.97260 5.02682 5.08475 5.10454 5.12367 5.19754 5.40629 5.41733 5.46856 5.54645 5.56204 5.59061 5.66497 5.73874 5.78267 5.91936 6.39346 6.48678 6.77720 7.11536 7.21452 7.91005 8.45747 9.24533 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016289 B = 0.002983 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.571184 B = 9384.615686 C = 9588.740661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.160 3.840 3 H 0.016 0.984 4 C -0.125 4.125 5 C 0.156 3.844 6 H 0.086 0.914 7 N -0.687 5.687 8 C 0.566 3.434 9 O -0.558 6.558 10 C 0.089 3.911 11 N -0.472 5.472 12 C 0.051 3.949 13 C -0.107 4.107 14 C -0.054 4.054 15 C -0.109 4.109 16 C -0.098 4.098 17 C -0.113 4.113 18 C -0.128 4.128 19 C -0.088 4.088 20 C -0.141 4.141 21 C 0.191 3.809 22 N -0.601 5.601 23 C -0.246 4.246 24 H 0.075 0.925 25 C -0.052 4.052 26 N -0.939 5.939 27 Si 0.963 3.037 28 H -0.263 1.263 29 H -0.296 1.296 30 H -0.295 1.295 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.410 0.590 37 H 0.187 0.813 38 H 0.187 0.813 39 H 0.171 0.829 40 H 0.164 0.836 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.047 0.953 46 H -0.010 1.010 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.488 10.891 -15.130 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.054 3.946 3 H 0.033 0.967 4 C -0.164 4.164 5 C 0.052 3.948 6 H 0.104 0.896 7 N -0.337 5.337 8 C 0.353 3.647 9 O -0.438 6.438 10 C -0.061 4.061 11 N -0.184 5.184 12 C -0.096 4.096 13 C -0.127 4.127 14 C -0.059 4.059 15 C -0.126 4.126 16 C -0.117 4.117 17 C -0.131 4.131 18 C -0.147 4.147 19 C -0.091 4.091 20 C -0.182 4.182 21 C 0.065 3.935 22 N -0.325 5.325 23 C -0.377 4.377 24 H 0.092 0.908 25 C -0.247 4.247 26 N -0.585 5.585 27 Si 0.792 3.208 28 H -0.187 1.187 29 H -0.223 1.223 30 H -0.222 1.222 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.248 0.752 37 H 0.204 0.796 38 H 0.204 0.796 39 H 0.188 0.812 40 H 0.182 0.818 41 H 0.166 0.834 42 H 0.166 0.834 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.008 0.992 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.027 10.191 -15.070 21.273 hybrid contribution 0.128 -0.083 1.387 1.396 sum 11.155 10.108 -13.683 20.343 Atomic orbital electron populations 1.21714 0.94252 1.01534 1.01054 1.20639 0.94499 0.92876 0.86566 0.96687 1.22242 0.92629 1.02700 0.98861 1.20929 0.94105 0.81988 0.97799 0.89622 1.46035 1.13535 1.12771 1.61359 1.18080 0.82011 0.86913 0.77734 1.90529 1.60589 1.44433 1.48238 1.21251 0.91488 0.93031 1.00339 1.67209 1.39961 1.00915 1.10291 1.22768 0.95684 0.92723 0.98401 1.22625 0.93541 1.01127 0.95378 1.18607 0.96437 0.91847 0.99041 1.21391 0.90772 1.01673 0.98793 1.21488 1.01769 0.91826 0.96641 1.21453 0.94758 0.98728 0.98151 1.22059 0.94671 1.00538 0.97447 1.18919 0.93440 0.95737 1.01027 1.22395 0.99274 0.99558 0.96926 1.20348 0.83697 0.95263 0.94209 1.44303 1.02436 1.65718 1.20090 1.19497 0.97412 1.34895 0.85888 0.90783 1.26001 0.98576 1.00449 0.99640 1.70154 1.22758 1.49479 1.16123 0.85260 0.79045 0.77099 0.79415 1.18666 1.22299 1.22205 0.94042 0.90651 0.92927 0.89453 0.89983 0.75230 0.79610 0.79551 0.81159 0.81805 0.83433 0.83371 0.91288 0.93532 0.93433 0.99241 0.94566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 8.00 71.98 0.58 -3.93 16 2 C 0.16 6.32 3.19 44.97 0.14 6.46 16 3 H 0.02 0.64 6.64 -2.39 -0.02 0.62 16 4 C -0.13 -4.08 5.08 30.67 0.16 -3.92 16 5 C 0.16 5.55 2.78 45.02 0.13 5.67 16 6 H 0.09 2.92 7.58 -2.39 -0.02 2.90 16 7 N -0.69 -24.95 4.26 -445.18 -1.89 -26.84 16 8 C 0.57 20.99 7.74 86.81 0.67 21.67 16 9 O -0.56 -21.91 13.11 -3.85 -0.05 -21.96 16 10 C 0.09 3.01 6.81 42.43 0.29 3.30 16 11 N -0.47 -14.71 9.52 -184.95 -1.76 -16.47 16 12 C 0.05 1.16 11.06 84.30 0.93 2.09 16 13 C -0.11 -1.93 9.88 22.47 0.22 -1.71 16 14 C -0.05 -1.20 5.75 -21.29 -0.12 -1.33 16 15 C -0.11 -1.66 9.82 22.30 0.22 -1.44 16 16 C -0.10 -1.46 9.95 22.07 0.22 -1.24 16 17 C -0.11 -2.27 9.95 22.08 0.22 -2.05 16 18 C -0.13 -3.63 9.23 22.26 0.21 -3.43 16 19 C -0.09 -2.63 5.76 -21.14 -0.12 -2.75 16 20 C -0.14 -5.86 5.77 30.67 0.18 -5.69 16 21 C 0.19 9.62 4.96 86.36 0.43 10.05 16 22 N -0.60 -29.65 2.98 -675.22 -2.01 -31.66 16 23 C -0.25 -13.21 8.44 84.03 0.71 -12.50 16 24 H 0.07 3.81 6.37 -2.91 -0.02 3.79 16 25 C -0.05 -2.90 5.14 84.86 0.44 -2.47 16 26 N -0.94 -56.61 11.03 21.65 0.24 -56.37 16 27 Si 0.96 45.26 29.56 68.60 2.03 47.29 16 28 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 29 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 30 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 31 H 0.04 1.61 7.67 -2.39 -0.02 1.59 16 32 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.05 1.85 7.41 -2.39 -0.02 1.83 16 34 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 35 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.41 15.21 6.23 -92.71 -0.58 14.63 16 37 H 0.19 3.00 8.06 -2.91 -0.02 2.97 16 38 H 0.19 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 40 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 41 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.15 4.87 4.97 -2.98 -0.01 4.86 16 43 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 44 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.05 2.75 6.21 -2.39 -0.01 2.73 16 46 H -0.01 -0.58 7.74 -2.39 -0.02 -0.60 16 47 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -72.31 371.22 2.46 -69.85 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.42 Total: 29.37 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 5.49 Total: 6.80 kcal Atomic # 7 Polarization: -125.92 SS G_CDS: -5.43 Total: -131.34 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.05 Total: -21.96 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -72.31 2.46 -69.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947666216.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.037 kcal (2) G-P(sol) polarization free energy of solvation -72.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds