Wall clock time and date at job start Tue Mar 31 2020 22:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.58616 * 2 1 4 4 C 1.53198 * 109.70179 * 120.34821 * 2 1 3 5 5 C 1.53040 * 109.30998 * 174.48827 * 4 2 1 6 6 H 1.09007 * 109.45584 * 58.66619 * 5 4 2 7 7 N 1.46498 * 109.45715 * 178.61493 * 5 4 2 8 8 C 1.34781 * 120.00029 * 205.07029 * 7 5 4 9 9 O 1.21557 * 120.00056 * 0.02562 * 8 7 5 10 10 C 1.47769 * 119.99972 * 180.02562 * 8 7 5 11 11 C 1.40638 * 119.80685 * 0.02562 * 10 8 7 12 12 C 1.35694 * 120.92501 * 179.97438 * 11 10 8 13 13 C 1.40765 * 120.11198 * 359.97438 * 12 11 10 14 14 N 1.33644 * 120.84206 * 180.02562 * 13 12 11 15 15 C 1.31118 * 121.39717 * 179.97438 * 14 13 12 16 16 C 1.39319 * 121.77255 * 359.97438 * 15 14 13 17 17 C 1.36574 * 119.89830 * 0.02562 * 16 15 14 18 18 C 1.40895 * 118.16024 * 0.02562 * 17 16 15 19 19 C 1.38544 * 119.80564 * 179.72706 * 10 8 7 20 20 C 1.53034 * 109.54302 * 298.63984 * 5 4 2 21 21 C 1.53196 * 109.31148 * 61.36625 * 20 5 4 22 22 N 1.46921 * 109.58690 * 239.71278 * 2 1 3 23 23 C 1.36931 * 120.63327 * 6.48437 * 22 2 1 24 24 H 1.08001 * 119.99613 * 330.15156 * 23 22 2 25 25 C 1.38816 * 120.00234 * 150.15352 * 23 22 2 26 26 N 1.31612 * 119.99500 * 344.49398 * 25 23 22 27 27 Si 1.86794 * 120.00031 * 164.49574 * 25 23 22 28 28 H 1.48504 * 109.47182 * 359.97438 * 27 25 23 29 29 H 1.48502 * 109.47444 * 119.99722 * 27 25 23 30 30 H 1.48500 * 109.47244 * 239.99848 * 27 25 23 31 31 H 1.09005 * 109.47165 * 180.28927 * 1 2 3 32 32 H 1.09005 * 109.47272 * 300.28695 * 1 2 3 33 33 H 1.09000 * 109.46818 * 60.28629 * 1 2 3 34 34 H 1.08991 * 109.50052 * 294.44576 * 4 2 1 35 35 H 1.09004 * 109.49192 * 54.54650 * 4 2 1 36 36 H 0.96997 * 120.00256 * 25.07669 * 7 5 4 37 37 H 1.08001 * 119.53474 * 359.97438 * 11 10 8 38 38 H 1.07997 * 119.94593 * 180.02562 * 12 11 10 39 39 H 1.07997 * 119.11800 * 179.97438 * 15 14 13 40 40 H 1.08001 * 120.04735 * 179.97438 * 16 15 14 41 41 H 1.08001 * 120.91886 * 179.97438 * 17 16 15 42 42 H 1.07997 * 120.29813 * 0.02562 * 19 10 8 43 43 H 1.09000 * 109.49716 * 301.41335 * 20 5 4 44 44 H 1.09006 * 109.49686 * 181.31452 * 20 5 4 45 45 H 1.08994 * 109.58582 * 65.15299 * 21 20 5 46 46 H 1.09004 * 109.58327 * 185.43719 * 21 20 5 47 47 H 0.97002 * 119.99590 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7287 1.2447 5 6 3.5705 -0.8443 1.1675 6 1 4.0071 0.1520 1.0966 7 7 4.0710 -1.5114 2.3719 8 6 5.3349 -1.2943 2.7867 9 8 6.0594 -0.5447 2.1617 10 6 5.8398 -1.9677 4.0013 11 6 4.9982 -2.8346 4.7211 12 6 5.4385 -3.4651 5.8390 13 6 6.7540 -3.2576 6.2951 14 7 7.2029 -3.8715 7.3941 15 6 8.4262 -3.6865 7.8284 16 6 9.3191 -2.8441 7.1694 17 6 8.9258 -2.1852 6.0396 18 6 7.6103 -2.3857 5.5768 19 6 7.1415 -1.7461 4.4208 20 6 3.9602 -1.6608 -0.0668 21 6 3.4654 -0.9425 -1.3263 22 7 2.0225 -0.6981 -1.1953 23 6 1.1535 -1.1126 -2.1689 24 1 0.1403 -1.3819 -1.9093 25 6 1.5747 -1.1869 -3.4895 26 7 2.6838 -0.5837 -3.8613 27 14 0.5675 -2.1429 -4.7388 28 1 -0.6256 -2.7240 -4.0723 29 1 0.1321 -1.2303 -5.8264 30 1 1.3954 -3.2350 -5.3108 31 1 -0.3634 -1.0277 0.0052 32 1 -0.3634 0.5183 0.8874 33 1 -0.3633 0.5094 -0.8926 34 1 1.7688 -0.1671 2.1365 35 1 1.6079 -1.7256 1.2906 36 1 3.4928 -2.1094 2.8709 37 1 3.9873 -3.0008 4.3791 38 1 4.7789 -4.1279 6.3794 39 1 8.7505 -4.2009 8.7208 40 1 10.3203 -2.7118 7.5519 41 1 9.6042 -1.5279 5.5160 42 1 7.7879 -1.0835 3.8645 43 1 3.5036 -2.6488 -0.0084 44 1 5.0447 -1.7624 -0.1083 45 1 3.9886 0.0075 -1.4344 46 1 3.6547 -1.5656 -2.2004 47 1 2.9780 -0.6353 -4.7841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947686540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:45 Heat of formation + Delta-G solvation = 37.916435 kcal Electronic energy + Delta-G solvation = -28475.398697 eV Core-core repulsion = 24623.275105 eV Total energy + Delta-G solvation = -3852.123591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.21699 -39.80059 -37.84843 -36.83623 -34.69918 -33.84794 -32.46981 -31.70328 -30.74994 -30.37807 -29.36616 -26.43152 -25.45095 -24.45205 -24.17739 -22.55783 -22.01383 -21.39267 -20.26570 -19.45927 -18.43843 -18.00428 -17.23305 -16.39262 -16.04582 -15.76351 -15.10821 -14.98885 -14.80659 -14.46415 -14.35831 -14.08508 -13.90699 -13.74193 -13.63917 -13.42308 -13.27986 -12.83732 -12.73316 -12.37220 -11.92217 -11.79718 -11.60421 -11.22931 -11.11747 -10.96903 -10.92573 -10.90746 -10.66832 -10.30882 -10.15872 -10.05191 -9.93817 -9.88167 -9.74488 -9.38524 -9.18849 -8.77710 -8.59013 -8.42306 -6.63590 -5.77165 -3.21426 -0.09536 0.32039 1.57851 2.18839 3.20712 3.24275 3.37349 3.45147 3.46672 3.80822 3.87407 4.21833 4.31168 4.47306 4.49124 4.56700 4.67054 4.77570 4.85374 5.09482 5.25678 5.36720 5.38831 5.41907 5.54735 5.57500 5.58316 5.66693 5.76309 5.89117 5.96263 5.99599 6.11927 6.14909 6.23297 6.31151 6.37842 6.40805 6.42656 6.50129 6.63268 6.78662 6.87155 7.02731 7.09453 7.37574 7.50203 7.62757 7.69618 7.83320 8.30089 8.47370 9.22590 9.86136 10.43563 11.31586 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024924 B = 0.002138 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.140737 B =13096.054878 C =13366.262042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.083 0.917 7 N -0.717 5.717 8 C 0.553 3.447 9 O -0.535 6.535 10 C -0.128 4.128 11 C -0.074 4.074 12 C -0.098 4.098 13 C 0.141 3.859 14 N -0.478 5.478 15 C 0.138 3.862 16 C -0.182 4.182 17 C -0.045 4.045 18 C -0.113 4.113 19 C -0.028 4.028 20 C -0.147 4.147 21 C 0.176 3.824 22 N -0.587 5.587 23 C -0.251 4.251 24 H 0.070 0.930 25 C 0.002 3.998 26 N -0.901 5.901 27 Si 0.900 3.100 28 H -0.278 1.278 29 H -0.291 1.291 30 H -0.290 1.290 31 H 0.053 0.947 32 H 0.038 0.962 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.394 0.606 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.160 0.840 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.088 0.912 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.364 -4.877 23.076 25.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.047 3.953 6 H 0.101 0.899 7 N -0.367 5.367 8 C 0.339 3.661 9 O -0.413 6.413 10 C -0.131 4.131 11 C -0.094 4.094 12 C -0.117 4.117 13 C 0.019 3.981 14 N -0.186 5.186 15 C -0.034 4.034 16 C -0.202 4.202 17 C -0.071 4.071 18 C -0.115 4.115 19 C -0.048 4.048 20 C -0.187 4.187 21 C 0.049 3.951 22 N -0.311 5.311 23 C -0.380 4.380 24 H 0.088 0.912 25 C -0.197 4.197 26 N -0.546 5.546 27 Si 0.730 3.270 28 H -0.203 1.203 29 H -0.218 1.218 30 H -0.217 1.217 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.229 0.771 37 H 0.152 0.848 38 H 0.159 0.841 39 H 0.178 0.822 40 H 0.157 0.843 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.039 0.961 46 H 0.106 0.894 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.242 -4.863 22.803 25.080 hybrid contribution -0.027 -0.285 -0.876 0.922 sum 9.215 -5.148 21.926 24.335 Atomic orbital electron populations 1.21790 0.95719 1.01386 1.00374 1.20355 0.93093 0.93588 0.86601 0.95548 1.22388 0.93566 1.01709 0.99765 1.21095 0.94302 0.96827 0.83036 0.89884 1.46266 1.12953 1.48262 1.29203 1.18155 0.82331 0.81588 0.83987 1.90792 1.56430 1.37202 1.56841 1.20100 0.95229 1.00500 0.97271 1.20994 0.99646 0.94582 0.94183 1.20675 0.93856 1.00533 0.96633 1.19007 0.94415 0.93279 0.91357 1.68071 1.15953 1.22249 1.12372 1.23042 0.88579 0.93694 0.98130 1.21911 1.01801 0.99301 0.97173 1.21598 0.94144 0.96389 0.94978 1.18824 0.95396 1.00012 0.97303 1.21475 0.94615 0.95606 0.93071 1.22578 0.99781 0.99607 0.96747 1.20726 0.83263 0.97295 0.93794 1.44166 1.02919 1.64967 1.19024 1.19191 0.95245 1.37525 0.86059 0.91222 1.25120 0.97916 0.99573 0.97047 1.70031 1.24201 1.43727 1.16604 0.86266 0.79597 0.79604 0.81545 1.20279 1.21777 1.21650 0.92788 0.94309 0.91812 0.92620 0.91755 0.77096 0.84762 0.84115 0.82242 0.84258 0.83943 0.83591 0.92616 0.92854 0.96132 0.89370 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.96 37.16 0.30 -2.15 16 2 C 0.17 3.43 3.49 -67.60 -0.24 3.19 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.19 4.85 -26.61 -0.13 -2.32 16 5 C 0.15 2.58 2.42 -67.89 -0.16 2.41 16 6 H 0.08 1.61 7.57 -51.93 -0.39 1.21 16 7 N -0.72 -9.97 5.03 -54.74 -0.28 -10.24 16 8 C 0.55 8.28 7.73 -12.36 -0.10 8.18 16 9 O -0.53 -10.01 15.97 5.32 0.08 -9.93 16 10 C -0.13 -1.54 5.87 -104.98 -0.62 -2.15 16 11 C -0.07 -0.71 9.44 -39.59 -0.37 -1.09 16 12 C -0.10 -0.96 9.95 -39.54 -0.39 -1.35 16 13 C 0.14 1.54 6.61 -84.78 -0.56 0.98 16 14 N -0.48 -4.98 10.33 -10.92 -0.11 -5.09 16 15 C 0.14 1.03 11.15 -17.45 -0.19 0.83 16 16 C -0.18 -1.15 10.03 -39.78 -0.40 -1.55 16 17 C -0.05 -0.35 9.89 -39.18 -0.39 -0.74 16 18 C -0.11 -1.17 5.74 -106.82 -0.61 -1.78 16 19 C -0.03 -0.32 9.34 -38.74 -0.36 -0.68 16 20 C -0.15 -2.89 5.65 -26.61 -0.15 -3.04 16 21 C 0.18 4.21 5.28 -3.71 -0.02 4.19 16 22 N -0.59 -14.22 2.99 -164.77 -0.49 -14.71 16 23 C -0.25 -6.61 8.57 -15.06 -0.13 -6.74 16 24 H 0.07 1.79 6.24 -52.49 -0.33 1.46 16 25 C 0.00 0.06 4.94 -17.43 -0.09 -0.03 16 26 N -0.90 -26.07 11.23 55.49 0.62 -25.44 16 27 Si 0.90 21.47 29.58 -169.99 -5.03 16.44 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 31 H 0.05 0.98 7.44 -51.93 -0.39 0.59 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 1.26 7.63 -51.93 -0.40 0.86 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.39 4.26 6.59 -40.82 -0.27 3.99 16 37 H 0.13 0.98 6.35 -52.49 -0.33 0.64 16 38 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 41 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.15 1.60 7.62 -52.49 -0.40 1.20 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 2.37 6.15 -51.93 -0.32 2.05 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 378.45 15.07 5.70 5.70 Total: -1.00 -32.86 378.45 -10.72 -43.58 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.61 Total: 3.51 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -4.61 Total: -3.83 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.26 Total: -55.48 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.86 -10.72 -43.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947686540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.500 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds