Wall clock time and date at job start Tue Mar 31 2020 22:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.58616 * 2 1 4 4 C 1.53198 * 109.70179 * 120.34821 * 2 1 3 5 5 C 1.53040 * 109.30998 * 174.48827 * 4 2 1 6 6 H 1.09007 * 109.45584 * 58.66619 * 5 4 2 7 7 N 1.46498 * 109.45715 * 178.61493 * 5 4 2 8 8 C 1.34781 * 120.00029 * 205.07029 * 7 5 4 9 9 O 1.21557 * 120.00056 * 0.02562 * 8 7 5 10 10 C 1.47769 * 119.99972 * 180.02562 * 8 7 5 11 11 C 1.40638 * 119.80685 * 0.02562 * 10 8 7 12 12 C 1.35694 * 120.92501 * 179.97438 * 11 10 8 13 13 C 1.40765 * 120.11198 * 359.97438 * 12 11 10 14 14 N 1.33644 * 120.84206 * 180.02562 * 13 12 11 15 15 C 1.31118 * 121.39717 * 179.97438 * 14 13 12 16 16 C 1.39319 * 121.77255 * 359.97438 * 15 14 13 17 17 C 1.36574 * 119.89830 * 0.02562 * 16 15 14 18 18 C 1.40895 * 118.16024 * 0.02562 * 17 16 15 19 19 C 1.38544 * 119.80564 * 179.72706 * 10 8 7 20 20 C 1.53034 * 109.54302 * 298.63984 * 5 4 2 21 21 C 1.53196 * 109.31148 * 61.36625 * 20 5 4 22 22 N 1.46921 * 109.58690 * 239.71278 * 2 1 3 23 23 C 1.36931 * 120.63327 * 6.48437 * 22 2 1 24 24 H 1.08001 * 119.99613 * 330.15156 * 23 22 2 25 25 C 1.38816 * 120.00234 * 150.15352 * 23 22 2 26 26 N 1.31612 * 119.99500 * 344.49398 * 25 23 22 27 27 Si 1.86794 * 120.00031 * 164.49574 * 25 23 22 28 28 H 1.48504 * 109.47182 * 359.97438 * 27 25 23 29 29 H 1.48502 * 109.47444 * 119.99722 * 27 25 23 30 30 H 1.48500 * 109.47244 * 239.99848 * 27 25 23 31 31 H 1.09005 * 109.47165 * 180.28927 * 1 2 3 32 32 H 1.09005 * 109.47272 * 300.28695 * 1 2 3 33 33 H 1.09000 * 109.46818 * 60.28629 * 1 2 3 34 34 H 1.08991 * 109.50052 * 294.44576 * 4 2 1 35 35 H 1.09004 * 109.49192 * 54.54650 * 4 2 1 36 36 H 0.96997 * 120.00256 * 25.07669 * 7 5 4 37 37 H 1.08001 * 119.53474 * 359.97438 * 11 10 8 38 38 H 1.07997 * 119.94593 * 180.02562 * 12 11 10 39 39 H 1.07997 * 119.11800 * 179.97438 * 15 14 13 40 40 H 1.08001 * 120.04735 * 179.97438 * 16 15 14 41 41 H 1.08001 * 120.91886 * 179.97438 * 17 16 15 42 42 H 1.07997 * 120.29813 * 0.02562 * 19 10 8 43 43 H 1.09000 * 109.49716 * 301.41335 * 20 5 4 44 44 H 1.09006 * 109.49686 * 181.31452 * 20 5 4 45 45 H 1.08994 * 109.58582 * 65.15299 * 21 20 5 46 46 H 1.09004 * 109.58327 * 185.43719 * 21 20 5 47 47 H 0.97002 * 119.99590 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7287 1.2447 5 6 3.5705 -0.8443 1.1675 6 1 4.0071 0.1520 1.0966 7 7 4.0710 -1.5114 2.3719 8 6 5.3349 -1.2943 2.7867 9 8 6.0594 -0.5447 2.1617 10 6 5.8398 -1.9677 4.0013 11 6 4.9982 -2.8346 4.7211 12 6 5.4385 -3.4651 5.8390 13 6 6.7540 -3.2576 6.2951 14 7 7.2029 -3.8715 7.3941 15 6 8.4262 -3.6865 7.8284 16 6 9.3191 -2.8441 7.1694 17 6 8.9258 -2.1852 6.0396 18 6 7.6103 -2.3857 5.5768 19 6 7.1415 -1.7461 4.4208 20 6 3.9602 -1.6608 -0.0668 21 6 3.4654 -0.9425 -1.3263 22 7 2.0225 -0.6981 -1.1953 23 6 1.1535 -1.1126 -2.1689 24 1 0.1403 -1.3819 -1.9093 25 6 1.5747 -1.1869 -3.4895 26 7 2.6838 -0.5837 -3.8613 27 14 0.5675 -2.1429 -4.7388 28 1 -0.6256 -2.7240 -4.0723 29 1 0.1321 -1.2303 -5.8264 30 1 1.3954 -3.2350 -5.3108 31 1 -0.3634 -1.0277 0.0052 32 1 -0.3634 0.5183 0.8874 33 1 -0.3633 0.5094 -0.8926 34 1 1.7688 -0.1671 2.1365 35 1 1.6079 -1.7256 1.2906 36 1 3.4928 -2.1094 2.8709 37 1 3.9873 -3.0008 4.3791 38 1 4.7789 -4.1279 6.3794 39 1 8.7505 -4.2009 8.7208 40 1 10.3203 -2.7118 7.5519 41 1 9.6042 -1.5279 5.5160 42 1 7.7879 -1.0835 3.8645 43 1 3.5036 -2.6488 -0.0084 44 1 5.0447 -1.7624 -0.1083 45 1 3.9886 0.0075 -1.4344 46 1 3.6547 -1.5656 -2.2004 47 1 2.9780 -0.6353 -4.7841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947686540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:44 Heat of formation + Delta-G solvation = 17.622997 kcal Electronic energy + Delta-G solvation = -28476.278686 eV Core-core repulsion = 24623.275105 eV Total energy + Delta-G solvation = -3853.003581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.96666 -40.96247 -39.34469 -37.71252 -36.19245 -34.53468 -34.23031 -33.12647 -31.96335 -31.12889 -30.84906 -28.00772 -26.86412 -25.73767 -24.86776 -23.81172 -23.19416 -22.63274 -21.64779 -21.05546 -19.42767 -18.84745 -18.22072 -17.96056 -17.17961 -16.88784 -16.71119 -16.12551 -15.74912 -15.57187 -15.53652 -15.32269 -15.15678 -14.97246 -14.85448 -14.53998 -14.43312 -14.32519 -14.00169 -13.33234 -13.11685 -12.97135 -12.76499 -12.72469 -12.66914 -12.60060 -12.46630 -12.35783 -12.06019 -11.84033 -11.71346 -11.61541 -11.50877 -11.37937 -10.95771 -10.56152 -10.53083 -10.12925 -9.82399 -9.35116 -8.63776 -7.83401 -5.30092 -0.82521 -0.35547 0.85575 1.39245 1.46785 1.48979 1.58828 2.05641 2.28012 2.53037 3.07109 3.26145 3.32965 3.54033 3.55604 3.64096 3.72201 3.86288 3.95876 3.99616 4.04071 4.06424 4.26073 4.29694 4.39668 4.50823 4.61855 4.70025 4.75857 4.76018 4.81799 4.87347 4.93863 4.97554 5.01638 5.07465 5.09759 5.16112 5.18028 5.26568 5.39055 5.44624 5.49920 5.54571 5.56693 5.71377 5.74275 5.74385 6.44038 6.51552 6.86867 7.16829 7.17702 7.89386 8.42704 9.24252 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024924 B = 0.002138 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.140737 B =13096.054878 C =13366.262042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.159 3.841 3 H 0.010 0.990 4 C -0.118 4.118 5 C 0.162 3.838 6 H 0.058 0.942 7 N -0.702 5.702 8 C 0.554 3.446 9 O -0.581 6.581 10 C -0.145 4.145 11 C -0.070 4.070 12 C -0.101 4.101 13 C 0.124 3.876 14 N -0.507 5.507 15 C 0.140 3.860 16 C -0.171 4.171 17 C -0.055 4.055 18 C -0.130 4.130 19 C -0.031 4.031 20 C -0.131 4.131 21 C 0.184 3.816 22 N -0.602 5.602 23 C -0.245 4.245 24 H 0.081 0.919 25 C -0.059 4.059 26 N -0.941 5.941 27 Si 0.963 3.037 28 H -0.261 1.261 29 H -0.297 1.297 30 H -0.295 1.295 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.414 0.586 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.194 0.806 40 H 0.177 0.823 41 H 0.162 0.838 42 H 0.140 0.860 43 H 0.063 0.937 44 H 0.043 0.957 45 H -0.013 1.013 46 H 0.053 0.947 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.759 -6.478 26.622 28.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 H 0.028 0.972 4 C -0.158 4.158 5 C 0.057 3.943 6 H 0.076 0.924 7 N -0.353 5.353 8 C 0.342 3.658 9 O -0.462 6.462 10 C -0.148 4.148 11 C -0.090 4.090 12 C -0.120 4.120 13 C 0.002 3.998 14 N -0.216 5.216 15 C -0.032 4.032 16 C -0.190 4.190 17 C -0.081 4.081 18 C -0.132 4.132 19 C -0.051 4.051 20 C -0.171 4.171 21 C 0.058 3.942 22 N -0.326 5.326 23 C -0.376 4.376 24 H 0.098 0.902 25 C -0.253 4.253 26 N -0.588 5.588 27 Si 0.792 3.208 28 H -0.185 1.185 29 H -0.224 1.224 30 H -0.223 1.223 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.252 0.748 37 H 0.177 0.823 38 H 0.175 0.825 39 H 0.211 0.789 40 H 0.194 0.806 41 H 0.180 0.820 42 H 0.158 0.842 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.005 0.995 46 H 0.072 0.928 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.595 -6.491 26.412 28.523 hybrid contribution 0.311 0.241 -1.812 1.854 sum 8.907 -6.250 24.600 26.899 Atomic orbital electron populations 1.21708 0.93767 1.01765 1.01150 1.20649 0.94784 0.92884 0.86449 0.97181 1.22196 0.92166 1.02468 0.98931 1.20709 0.95147 0.95252 0.83178 0.92418 1.45939 1.13087 1.48217 1.28086 1.18614 0.81972 0.80809 0.84381 1.90770 1.57608 1.39345 1.58503 1.19897 0.96064 1.02064 0.96782 1.21125 1.00304 0.93755 0.93856 1.20906 0.93906 1.00569 0.96602 1.19308 0.95072 0.93543 0.91829 1.68130 1.17580 1.23238 1.12624 1.23747 0.87773 0.93028 0.98682 1.22326 1.03142 0.97587 0.95978 1.21942 0.93475 0.96955 0.95739 1.18977 0.96740 1.00370 0.97127 1.21538 0.94510 0.95563 0.93505 1.22316 0.98997 0.99689 0.96091 1.20420 0.83737 0.95399 0.94691 1.44428 1.02523 1.65659 1.20033 1.19574 0.95718 1.35840 0.86432 0.90150 1.25902 0.99209 1.01118 0.99116 1.70206 1.26246 1.45905 1.16445 0.85255 0.78573 0.77872 0.79075 1.18454 1.22404 1.22264 0.92517 0.90412 0.94184 0.89091 0.90316 0.74786 0.82314 0.82457 0.78943 0.80585 0.82030 0.84215 0.91819 0.93803 0.99507 0.92813 0.94474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 7.96 71.98 0.57 -3.72 16 2 C 0.16 6.23 3.49 44.98 0.16 6.39 16 3 H 0.01 0.44 8.14 -2.39 -0.02 0.43 16 4 C -0.12 -3.57 4.85 30.67 0.15 -3.42 16 5 C 0.16 5.47 2.42 45.02 0.11 5.58 16 6 H 0.06 2.29 7.57 -2.38 -0.02 2.27 16 7 N -0.70 -18.58 5.03 -445.36 -2.24 -20.82 16 8 C 0.55 16.56 7.73 86.76 0.67 17.23 16 9 O -0.58 -22.59 15.97 -3.90 -0.06 -22.66 16 10 C -0.14 -3.42 5.87 -20.10 -0.12 -3.53 16 11 C -0.07 -1.24 9.44 22.27 0.21 -1.03 16 12 C -0.10 -1.80 9.95 22.30 0.22 -1.58 16 13 C 0.12 2.52 6.61 40.36 0.27 2.79 16 14 N -0.51 -9.51 10.33 -188.45 -1.95 -11.46 16 15 C 0.14 1.65 11.15 85.06 0.95 2.60 16 16 C -0.17 -1.60 10.03 22.14 0.22 -1.38 16 17 C -0.06 -0.75 9.89 22.53 0.22 -0.53 16 18 C -0.13 -2.57 5.74 -21.29 -0.12 -2.69 16 19 C -0.03 -0.71 9.34 22.81 0.21 -0.50 16 20 C -0.13 -5.26 5.65 30.67 0.17 -5.09 16 21 C 0.18 9.29 5.28 86.36 0.46 9.75 16 22 N -0.60 -29.66 2.99 -675.22 -2.02 -31.67 16 23 C -0.25 -13.03 8.57 84.04 0.72 -12.31 16 24 H 0.08 4.05 6.24 -2.91 -0.02 4.03 16 25 C -0.06 -3.29 4.94 84.86 0.42 -2.88 16 26 N -0.94 -57.01 11.23 21.65 0.24 -56.77 16 27 Si 0.96 44.97 29.58 68.60 2.03 47.00 16 28 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 29 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 30 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 31 H 0.06 1.89 7.44 -2.38 -0.02 1.87 16 32 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.04 1.53 7.63 -2.39 -0.02 1.51 16 34 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 36 H 0.41 7.75 6.59 -92.71 -0.61 7.14 16 37 H 0.16 1.84 6.35 -2.91 -0.02 1.82 16 38 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 39 H 0.19 0.82 8.06 -2.91 -0.02 0.80 16 40 H 0.18 0.32 8.06 -2.91 -0.02 0.30 16 41 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 42 H 0.14 3.21 7.62 -2.91 -0.02 3.19 16 43 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 45 H -0.01 -0.74 8.14 -2.39 -0.02 -0.75 16 46 H 0.05 3.06 6.15 -2.38 -0.01 3.05 16 47 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -76.13 378.45 1.88 -74.25 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.38 Total: 16.46 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 5.49 Total: 5.67 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -5.96 Total: -120.72 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.06 Total: -22.66 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -76.13 1.88 -74.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947686540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.872 kcal (2) G-P(sol) polarization free energy of solvation -76.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds