Wall clock time and date at job start Tue Mar 31 2020 22:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.69933 * 2 1 4 4 C 1.53198 * 109.58495 * 239.64979 * 2 1 3 5 5 C 1.53037 * 109.30868 * 294.84210 * 4 2 1 6 6 H 1.09002 * 109.46187 * 58.66351 * 5 4 2 7 7 N 1.46504 * 109.45946 * 178.63306 * 5 4 2 8 8 C 1.34781 * 120.00186 * 205.02875 * 7 5 4 9 9 O 1.21567 * 119.99921 * 0.02562 * 8 7 5 10 10 C 1.47763 * 119.99980 * 179.97438 * 8 7 5 11 11 C 1.40633 * 119.80924 * 359.97438 * 10 8 7 12 12 C 1.35692 * 120.92761 * 179.97438 * 11 10 8 13 13 C 1.40766 * 120.11211 * 359.97438 * 12 11 10 14 14 N 1.33646 * 120.84341 * 180.02562 * 13 12 11 15 15 C 1.31126 * 121.39760 * 179.97438 * 14 13 12 16 16 C 1.39312 * 121.77121 * 0.02562 * 15 14 13 17 17 C 1.36582 * 119.90099 * 359.97438 * 16 15 14 18 18 C 1.40890 * 118.15679 * 359.97438 * 17 16 15 19 19 C 1.38552 * 119.80262 * 179.72926 * 10 8 7 20 20 C 1.53043 * 109.53232 * 298.64464 * 5 4 2 21 21 C 1.53158 * 109.32515 * 61.37200 * 20 5 4 22 22 N 1.46919 * 109.59007 * 120.35568 * 2 1 3 23 23 C 1.36931 * 120.63264 * 246.15645 * 22 2 1 24 24 H 1.08001 * 120.00477 * 331.83160 * 23 22 2 25 25 C 1.38814 * 120.00041 * 151.82291 * 23 22 2 26 26 N 1.31627 * 119.99987 * 343.09894 * 25 23 22 27 27 Si 1.86799 * 119.99883 * 163.09286 * 25 23 22 28 28 H 1.48505 * 109.47234 * 60.00768 * 27 25 23 29 29 H 1.48508 * 109.47069 * 180.02562 * 27 25 23 30 30 H 1.48496 * 109.47489 * 299.99968 * 27 25 23 31 31 H 1.09006 * 109.46833 * 180.35571 * 1 2 3 32 32 H 1.08994 * 109.47091 * 300.35010 * 1 2 3 33 33 H 1.09001 * 109.47037 * 60.35475 * 1 2 3 34 34 H 1.08998 * 109.49612 * 174.89676 * 4 2 1 35 35 H 1.08999 * 109.50279 * 54.79655 * 4 2 1 36 36 H 0.96998 * 120.00230 * 25.02610 * 7 5 4 37 37 H 1.08005 * 119.53359 * 359.97438 * 11 10 8 38 38 H 1.07996 * 119.94804 * 179.97438 * 12 11 10 39 39 H 1.07992 * 119.11226 * 180.02562 * 15 14 13 40 40 H 1.08001 * 120.05235 * 179.97438 * 16 15 14 41 41 H 1.07995 * 120.92058 * 179.97438 * 17 16 15 42 42 H 1.07997 * 120.29753 * 359.97438 * 19 10 8 43 43 H 1.08994 * 109.50002 * 181.31669 * 20 5 4 44 44 H 1.09006 * 109.49254 * 301.40964 * 20 5 4 45 45 H 1.09004 * 109.58981 * 185.57837 * 21 20 5 46 46 H 1.08997 * 109.70795 * 65.21198 * 21 20 5 47 47 H 0.96996 * 119.99377 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2455 5 6 1.6415 -2.2040 -1.1702 6 1 0.5566 -2.2815 -1.0995 7 7 2.1027 -2.8978 -2.3753 8 6 1.4752 -4.0158 -2.7912 9 8 0.5262 -4.4482 -2.1665 10 6 1.9401 -4.7152 -4.0070 11 6 3.0373 -4.2104 -4.7274 12 6 3.4835 -4.8347 -5.8466 13 6 2.8484 -6.0050 -6.3032 14 7 3.2760 -6.6320 -7.4033 15 6 2.6928 -7.7230 -7.8381 16 6 1.6009 -8.2836 -7.1791 17 6 1.1122 -7.6942 -6.0481 18 6 1.7421 -6.5227 -5.5835 19 6 1.2955 -5.8672 -4.4276 20 6 2.2801 -2.8461 0.0635 21 6 1.7693 -2.1411 1.3236 22 7 2.0226 -0.6995 1.1944 23 6 2.7053 -0.0211 2.1684 24 1 3.2771 0.8591 1.9139 25 6 2.6622 -0.4644 3.4831 26 7 1.7279 -1.3106 3.8621 27 14 3.9304 0.1397 4.7145 28 1 3.8421 1.6176 4.8313 29 1 3.6679 -0.4784 6.0390 30 1 5.2894 -0.2401 4.2522 31 1 -0.3633 -1.0277 0.0064 32 1 -0.3633 0.5192 0.8868 33 1 -0.3633 0.5083 -0.8932 34 1 3.1297 -0.6503 -1.2914 35 1 1.6075 -0.2784 -2.1369 36 1 2.8597 -2.5525 -2.8740 37 1 3.5318 -3.3133 -4.3852 38 1 4.3272 -4.4331 -6.3879 39 1 3.0692 -8.1998 -8.7310 40 1 1.1416 -9.1830 -7.5619 41 1 0.2664 -8.1144 -5.5244 42 1 0.4558 -6.2560 -3.8707 43 1 2.0125 -3.9019 0.1039 44 1 3.3641 -2.7470 0.0052 45 1 2.2946 -2.5275 2.1970 46 1 0.6990 -2.3155 1.4341 47 1 1.6982 -1.6206 4.7807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947686541.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:49 Heat of formation + Delta-G solvation = 37.997921 kcal Electronic energy + Delta-G solvation = -28596.186688 eV Core-core repulsion = 24744.066630 eV Total energy + Delta-G solvation = -3852.120058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.21512 -39.82310 -37.94366 -36.83256 -34.60828 -33.84223 -32.59240 -31.38690 -30.56107 -30.36315 -29.38552 -26.96046 -25.27805 -24.21196 -24.12029 -22.57216 -21.98123 -21.78260 -20.71559 -18.93565 -18.27704 -17.85090 -17.26994 -16.74862 -16.01979 -15.86498 -14.99561 -14.83896 -14.76980 -14.45831 -14.33214 -14.16564 -13.77238 -13.75239 -13.70024 -13.44029 -13.08787 -12.68286 -12.53317 -12.35087 -12.22957 -11.89985 -11.79713 -11.40048 -11.06934 -10.96641 -10.94011 -10.78595 -10.61799 -10.35874 -10.20698 -10.07905 -9.90137 -9.82379 -9.72221 -9.36725 -9.18692 -8.77784 -8.59021 -8.40138 -6.68484 -5.78268 -3.21233 -0.09390 0.32215 1.57996 2.19052 3.21437 3.24825 3.38631 3.44706 3.45265 3.81020 3.87572 4.21992 4.31335 4.47525 4.48799 4.56995 4.67239 4.77806 4.85521 5.09635 5.27308 5.38102 5.38830 5.40225 5.54994 5.58267 5.59528 5.66865 5.78276 5.89709 5.97403 6.01573 6.06543 6.12247 6.25695 6.29779 6.38664 6.42165 6.46144 6.57964 6.65074 6.78931 6.87279 6.94805 7.15648 7.38650 7.50331 7.63295 7.70675 7.79988 8.30600 8.46041 9.21568 9.84918 10.41794 11.29979 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024719 B = 0.002152 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.454776 B =13009.702546 C =13058.641172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.149 3.851 6 H 0.087 0.913 7 N -0.717 5.717 8 C 0.553 3.447 9 O -0.535 6.535 10 C -0.128 4.128 11 C -0.074 4.074 12 C -0.098 4.098 13 C 0.141 3.859 14 N -0.478 5.478 15 C 0.138 3.862 16 C -0.182 4.182 17 C -0.045 4.045 18 C -0.113 4.113 19 C -0.028 4.028 20 C -0.147 4.147 21 C 0.174 3.826 22 N -0.585 5.585 23 C -0.254 4.254 24 H 0.065 0.935 25 C 0.004 3.996 26 N -0.900 5.900 27 Si 0.902 3.098 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.284 1.284 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.036 0.964 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.394 0.606 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.160 0.840 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.089 0.911 46 H 0.022 0.978 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.909 -10.815 -23.027 25.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.084 0.916 4 C -0.173 4.173 5 C 0.046 3.954 6 H 0.105 0.895 7 N -0.367 5.367 8 C 0.339 3.661 9 O -0.413 6.413 10 C -0.131 4.131 11 C -0.094 4.094 12 C -0.117 4.117 13 C 0.019 3.981 14 N -0.186 5.186 15 C -0.035 4.035 16 C -0.202 4.202 17 C -0.071 4.071 18 C -0.115 4.115 19 C -0.048 4.048 20 C -0.187 4.187 21 C 0.047 3.953 22 N -0.306 5.306 23 C -0.383 4.383 24 H 0.083 0.917 25 C -0.195 4.195 26 N -0.544 5.544 27 Si 0.732 3.268 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.211 1.211 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.229 0.771 37 H 0.152 0.848 38 H 0.159 0.841 39 H 0.178 0.822 40 H 0.157 0.843 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.107 0.893 46 H 0.040 0.960 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.942 -10.712 -22.731 25.146 hybrid contribution 0.272 -0.029 0.858 0.901 sum 1.214 -10.741 -21.873 24.398 Atomic orbital electron populations 1.22305 0.98685 1.01167 1.00052 1.20438 0.91797 0.95107 0.86475 0.91599 1.22315 1.01204 0.94077 0.99703 1.21159 0.99935 0.91338 0.82944 0.89493 1.46279 1.34426 1.26813 1.29190 1.18152 0.82999 0.80923 0.83995 1.90793 1.27875 1.65713 1.56915 1.20101 0.98194 0.97549 0.97248 1.20994 0.94831 0.99401 0.94179 1.20675 1.00460 0.93937 0.96627 1.19008 0.92665 0.95054 0.91332 1.68075 1.29392 1.08806 1.12372 1.23041 0.91409 0.90861 0.98140 1.21910 0.98914 1.02194 0.97169 1.21598 0.97853 0.92693 0.94967 1.18825 0.98007 0.97403 0.97299 1.21479 0.97757 0.92457 0.93083 1.22569 1.00187 0.99185 0.96782 1.20736 0.97779 0.82910 0.93832 1.44150 1.63759 1.03431 1.19272 1.19107 1.21899 1.10663 0.86651 0.91731 1.25063 0.97655 0.99983 0.96836 1.70026 1.31666 1.35746 1.16968 0.86384 0.81579 0.78343 0.80512 1.20911 1.21687 1.21079 0.93179 0.92599 0.94496 0.91838 0.92531 0.77125 0.84756 0.84117 0.82245 0.84261 0.83946 0.83594 0.92895 0.92632 0.89320 0.96006 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 9.02 37.16 0.34 -2.76 16 2 C 0.17 3.38 3.29 -67.60 -0.22 3.16 16 3 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 4 C -0.13 -2.16 5.02 -26.61 -0.13 -2.29 16 5 C 0.15 2.54 2.21 -67.89 -0.15 2.39 16 6 H 0.09 1.67 5.94 -51.93 -0.31 1.36 16 7 N -0.72 -9.96 5.03 -54.73 -0.28 -10.24 16 8 C 0.55 8.27 7.73 -12.36 -0.10 8.17 16 9 O -0.53 -9.99 15.97 5.31 0.08 -9.91 16 10 C -0.13 -1.54 5.87 -104.98 -0.62 -2.15 16 11 C -0.07 -0.71 9.44 -39.59 -0.37 -1.09 16 12 C -0.10 -0.96 9.95 -39.54 -0.39 -1.35 16 13 C 0.14 1.54 6.61 -84.78 -0.56 0.98 16 14 N -0.48 -4.98 10.33 -10.92 -0.11 -5.09 16 15 C 0.14 1.03 11.15 -17.45 -0.19 0.83 16 16 C -0.18 -1.16 10.03 -39.78 -0.40 -1.55 16 17 C -0.05 -0.35 9.89 -39.18 -0.39 -0.74 16 18 C -0.11 -1.17 5.74 -106.82 -0.61 -1.78 16 19 C -0.03 -0.32 9.35 -38.73 -0.36 -0.68 16 20 C -0.15 -2.90 5.65 -26.63 -0.15 -3.05 16 21 C 0.17 4.14 4.88 -3.72 -0.02 4.12 16 22 N -0.58 -14.10 2.70 -164.79 -0.44 -14.54 16 23 C -0.25 -6.77 9.58 -15.06 -0.14 -6.92 16 24 H 0.06 1.69 7.88 -52.49 -0.41 1.27 16 25 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 26 N -0.90 -25.94 11.20 55.49 0.62 -25.32 16 27 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 30 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 31 H 0.05 0.99 5.72 -51.93 -0.30 0.69 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.39 4.25 6.59 -40.82 -0.27 3.98 16 37 H 0.13 0.98 6.35 -52.48 -0.33 0.64 16 38 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 41 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.15 1.60 7.62 -52.49 -0.40 1.20 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.09 2.38 6.06 -51.93 -0.31 2.07 16 46 H 0.02 0.56 7.49 -51.93 -0.39 0.17 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 377.42 15.07 5.69 5.69 Total: -1.00 -32.75 377.42 -10.53 -43.28 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.50 Total: 4.36 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -4.56 Total: -4.69 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.21 Total: -55.19 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.75 -10.53 -43.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947686541.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.277 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds