Wall clock time and date at job start Tue Mar 31 2020 22:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.58491 * 2 1 4 4 C 1.53196 * 109.70109 * 120.35431 * 2 1 3 5 5 C 1.53047 * 109.31218 * 174.49645 * 4 2 1 6 6 H 1.09007 * 109.45834 * 58.65331 * 5 4 2 7 7 N 1.46494 * 109.45842 * 178.61453 * 5 4 2 8 8 C 1.34782 * 119.99897 * 204.99957 * 7 5 4 9 9 O 1.21562 * 119.99938 * 359.97438 * 8 7 5 10 10 C 1.47761 * 119.99947 * 180.02562 * 8 7 5 11 11 C 1.40599 * 120.27039 * 359.97438 * 10 8 7 12 12 N 1.30792 * 121.54049 * 179.97438 * 11 10 8 13 13 C 1.33821 * 121.72145 * 0.02562 * 12 11 10 14 14 C 1.40526 * 120.82264 * 180.02562 * 13 12 11 15 15 C 1.36141 * 119.81095 * 179.97438 * 14 13 12 16 16 C 1.39332 * 121.09156 * 0.05052 * 15 14 13 17 17 C 1.36144 * 120.83685 * 359.97134 * 16 15 14 18 18 C 1.40547 * 119.61598 * 0.02562 * 17 16 15 19 19 C 1.39013 * 120.26601 * 179.72150 * 10 8 7 20 20 C 1.53044 * 109.53501 * 298.63396 * 5 4 2 21 21 C 1.52755 * 109.38392 * 61.24078 * 20 5 4 22 22 N 1.46926 * 109.59006 * 239.71268 * 2 1 3 23 23 C 1.36932 * 120.63049 * 6.44196 * 22 2 1 24 24 H 1.07997 * 120.00158 * 329.45056 * 23 22 2 25 25 C 1.38814 * 120.00129 * 149.44776 * 23 22 2 26 26 N 1.31621 * 120.00018 * 145.18350 * 25 23 22 27 27 Si 1.86798 * 120.00110 * 325.18825 * 25 23 22 28 28 H 1.48501 * 109.47138 * 274.74647 * 27 25 23 29 29 H 1.48502 * 109.47432 * 34.74735 * 27 25 23 30 30 H 1.48503 * 109.47226 * 154.74643 * 27 25 23 31 31 H 1.09003 * 109.47161 * 180.27843 * 1 2 3 32 32 H 1.08993 * 109.47615 * 300.28730 * 1 2 3 33 33 H 1.09005 * 109.46976 * 60.28586 * 1 2 3 34 34 H 1.09001 * 109.49538 * 294.44494 * 4 2 1 35 35 H 1.08995 * 109.49960 * 54.54116 * 4 2 1 36 36 H 0.97003 * 120.00185 * 24.99419 * 7 5 4 37 37 H 1.08000 * 119.22751 * 0.02562 * 11 10 8 38 38 H 1.07987 * 120.09279 * 359.96296 * 14 13 12 39 39 H 1.08002 * 119.45100 * 180.02562 * 15 14 13 40 40 H 1.08000 * 119.58097 * 179.97438 * 16 15 14 41 41 H 1.07998 * 120.19147 * 179.97438 * 17 16 15 42 42 H 1.07994 * 121.01692 * 0.02562 * 19 10 8 43 43 H 1.08998 * 109.49124 * 181.31850 * 20 5 4 44 44 H 1.08999 * 109.49361 * 301.41417 * 20 5 4 45 45 H 1.09000 * 109.51420 * 185.70645 * 21 20 5 46 46 H 1.08998 * 109.43350 * 65.42049 * 21 20 5 47 47 H 0.97001 * 119.99988 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0464 -0.7289 1.2446 5 6 3.5706 -0.8443 1.1675 6 1 4.0071 0.1521 1.0966 7 7 4.0709 -1.5115 2.3719 8 6 5.3352 -1.2955 2.7860 9 8 6.0604 -0.5473 2.1598 10 6 5.8401 -1.9689 4.0005 11 6 5.0064 -2.8357 4.7287 12 7 5.4277 -3.4450 5.8067 13 6 6.6711 -3.2744 6.2709 14 6 7.1042 -3.9391 7.4308 15 6 8.3739 -3.7509 7.8846 16 6 9.2584 -2.9058 7.2177 17 6 8.8761 -2.2440 6.0910 18 6 7.5726 -2.4146 5.5940 19 6 7.1450 -1.7546 4.4293 20 6 3.9602 -1.6607 -0.0669 21 6 3.4649 -0.9475 -1.3236 22 7 2.0226 -0.6981 -1.1953 23 6 1.1535 -1.1134 -2.1685 24 1 0.1439 -1.3940 -1.9070 25 6 1.5700 -1.1738 -3.4913 26 7 1.1134 -2.1214 -4.2825 27 14 2.7785 0.0899 -4.1486 28 1 2.0386 1.2990 -4.5911 29 1 3.7380 0.4611 -3.0777 30 1 3.5196 -0.4857 -5.2995 31 1 -0.3634 -1.0277 0.0050 32 1 -0.3634 0.5182 0.8873 33 1 -0.3633 0.5094 -0.8926 34 1 1.7687 -0.1672 2.1365 35 1 1.6079 -1.7256 1.2906 36 1 3.4923 -2.1087 2.8714 37 1 3.9948 -3.0030 4.3896 38 1 6.4317 -4.5970 7.9608 39 1 8.7007 -4.2650 8.7764 40 1 10.2601 -2.7740 7.5994 41 1 9.5701 -1.5912 5.5827 42 1 7.8080 -1.0968 3.8871 43 1 5.0447 -1.7623 -0.1083 44 1 3.5037 -2.6488 -0.0085 45 1 3.6511 -1.5746 -2.1955 46 1 3.9912 0.0006 -1.4337 47 1 1.4048 -2.1638 -5.2067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947753551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:30 Heat of formation + Delta-G solvation = 45.533708 kcal Electronic energy + Delta-G solvation = -28553.033919 eV Core-core repulsion = 24701.240637 eV Total energy + Delta-G solvation = -3851.793282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.29947 -39.79321 -38.00322 -37.20422 -34.82919 -33.78702 -32.47635 -31.91299 -31.08299 -30.46052 -29.82728 -26.62415 -25.40231 -24.45027 -24.21540 -22.53536 -22.46987 -21.51534 -20.41702 -19.58244 -18.50083 -18.09145 -17.46141 -16.47186 -16.13380 -15.81448 -15.19543 -15.04948 -14.96835 -14.60009 -14.55037 -14.38542 -14.03527 -13.80823 -13.61979 -13.45503 -13.29822 -13.14852 -12.56189 -12.20239 -12.17639 -12.02684 -11.89840 -11.81579 -11.34163 -11.05073 -11.02892 -10.86766 -10.55952 -10.47482 -10.32219 -10.29437 -9.98248 -9.88584 -9.62556 -9.36123 -9.23376 -8.86900 -8.67573 -8.37408 -6.91945 -6.02211 -3.25741 -0.13526 0.23444 1.49413 2.24218 3.04723 3.08359 3.43865 3.54402 3.60124 3.75011 3.80303 4.16713 4.33058 4.40264 4.43284 4.60121 4.62680 4.71264 4.82413 4.88385 5.00074 5.15445 5.27202 5.35323 5.39687 5.47717 5.50472 5.62321 5.63448 5.78949 5.88075 5.97462 5.99720 6.03424 6.07397 6.16252 6.22517 6.28371 6.36398 6.39201 6.43472 6.53109 6.67114 6.82673 6.86927 6.98542 7.07852 7.44807 7.49739 7.99815 8.15098 8.35812 8.98147 9.75637 10.17271 11.12412 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024146 B = 0.002265 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.327950 B =12357.546245 C =12842.851601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.172 3.828 3 H 0.030 0.970 4 C -0.136 4.136 5 C 0.151 3.849 6 H 0.084 0.916 7 N -0.716 5.716 8 C 0.561 3.439 9 O -0.535 6.535 10 C -0.189 4.189 11 C 0.163 3.837 12 N -0.476 5.476 13 C 0.140 3.860 14 C -0.098 4.098 15 C -0.093 4.093 16 C -0.121 4.121 17 C -0.085 4.085 18 C -0.113 4.113 19 C 0.011 3.989 20 C -0.144 4.144 21 C 0.147 3.853 22 N -0.596 5.596 23 C -0.270 4.270 24 H 0.085 0.915 25 C 0.040 3.960 26 N -0.885 5.885 27 Si 0.833 3.167 28 H -0.291 1.291 29 H -0.253 1.253 30 H -0.298 1.298 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.396 0.604 37 H 0.163 0.837 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.154 0.846 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.030 0.970 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.676 -1.867 24.864 27.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.065 3.935 3 H 0.048 0.952 4 C -0.175 4.175 5 C 0.048 3.952 6 H 0.102 0.898 7 N -0.366 5.366 8 C 0.347 3.653 9 O -0.412 6.412 10 C -0.195 4.195 11 C -0.011 4.011 12 N -0.183 5.183 13 C 0.019 3.981 14 C -0.117 4.117 15 C -0.112 4.112 16 C -0.139 4.139 17 C -0.104 4.104 18 C -0.115 4.115 19 C -0.016 4.016 20 C -0.184 4.184 21 C 0.020 3.980 22 N -0.321 5.321 23 C -0.398 4.398 24 H 0.102 0.898 25 C -0.161 4.161 26 N -0.525 5.525 27 Si 0.660 3.340 28 H -0.219 1.219 29 H -0.178 1.178 30 H -0.225 1.225 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.231 0.769 37 H 0.180 0.820 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.171 0.829 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.048 0.952 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.648 -2.003 24.757 27.873 hybrid contribution 0.926 0.910 -0.852 1.553 sum 13.574 -1.093 23.904 27.511 Atomic orbital electron populations 1.21791 0.95051 1.01952 1.00501 1.20406 0.93717 0.93333 0.86066 0.95243 1.22380 0.93288 1.02169 0.99694 1.21071 0.94524 0.96692 0.82948 0.89771 1.46214 1.12857 1.48385 1.29146 1.17957 0.82300 0.81412 0.83679 1.90794 1.56419 1.37279 1.56728 1.21065 0.96375 1.02937 0.99096 1.23076 0.99239 0.89582 0.89223 1.67958 1.14753 1.22560 1.13026 1.19031 0.89339 0.94582 0.95123 1.20848 0.96464 0.99592 0.94767 1.21003 0.93231 0.97351 0.99656 1.20963 1.00222 0.97057 0.95690 1.21100 0.94188 0.98878 0.96230 1.18855 0.95992 0.99842 0.96817 1.21993 0.94355 0.93222 0.91982 1.22396 1.00048 1.00076 0.95908 1.21274 0.84612 0.97017 0.95053 1.44467 1.02362 1.65277 1.19955 1.18726 0.96871 1.38708 0.85483 0.89762 1.25318 0.97177 0.97480 0.96139 1.70072 1.46161 1.28991 1.07320 0.87686 0.82335 0.84702 0.79244 1.21862 1.17760 1.22455 0.92335 0.94139 0.91641 0.92198 0.91229 0.76900 0.82021 0.84434 0.85051 0.85214 0.84793 0.82858 0.92455 0.91670 0.91254 0.95250 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.96 37.16 0.30 -2.06 16 2 C 0.17 3.19 3.49 -67.60 -0.24 2.96 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.14 -2.04 4.85 -26.61 -0.13 -2.17 16 5 C 0.15 2.36 2.42 -67.89 -0.16 2.20 16 6 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 7 N -0.72 -9.11 5.03 -54.73 -0.28 -9.38 16 8 C 0.56 7.78 7.74 -12.37 -0.10 7.68 16 9 O -0.53 -9.30 16.04 5.31 0.09 -9.22 16 10 C -0.19 -2.19 5.89 -104.83 -0.62 -2.80 16 11 C 0.16 1.68 10.68 -17.10 -0.18 1.50 16 12 N -0.48 -5.39 10.30 -10.67 -0.11 -5.50 16 13 C 0.14 1.49 6.61 -84.79 -0.56 0.93 16 14 C -0.10 -0.81 9.97 -39.47 -0.39 -1.21 16 15 C -0.09 -0.58 9.94 -39.93 -0.40 -0.97 16 16 C -0.12 -0.74 9.96 -39.93 -0.40 -1.14 16 17 C -0.09 -0.64 9.77 -39.46 -0.39 -1.02 16 18 C -0.11 -1.13 5.74 -106.81 -0.61 -1.74 16 19 C 0.01 0.12 9.46 -38.43 -0.36 -0.24 16 20 C -0.14 -2.61 5.64 -26.83 -0.15 -2.76 16 21 C 0.15 3.18 4.32 -3.93 -0.02 3.16 16 22 N -0.60 -13.52 2.67 -165.04 -0.44 -13.96 16 23 C -0.27 -7.17 8.80 -15.06 -0.13 -7.30 16 24 H 0.08 2.35 6.45 -52.49 -0.34 2.02 16 25 C 0.04 1.13 4.83 -17.43 -0.08 1.04 16 26 N -0.89 -26.42 13.97 55.49 0.78 -25.64 16 27 Si 0.83 21.14 26.80 -169.99 -4.56 16.59 16 28 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 29 H -0.25 -6.10 4.66 56.52 0.26 -5.84 16 30 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 31 H 0.06 1.06 7.43 -51.93 -0.39 0.68 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 1.25 7.64 -51.93 -0.40 0.86 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.40 3.87 6.63 -40.82 -0.27 3.60 16 37 H 0.16 1.23 6.37 -52.49 -0.33 0.90 16 38 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 39 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 42 H 0.15 1.53 7.70 -52.49 -0.40 1.12 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.07 1.64 6.05 -51.93 -0.31 1.33 16 46 H 0.03 0.66 6.57 -51.93 -0.34 0.32 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 373.56 15.07 5.63 5.63 Total: -1.00 -32.97 373.56 -10.20 -43.17 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.68 Total: 2.27 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -4.62 Total: -3.96 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.05 Total: -54.48 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.56 Total: 16.59 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.97 -10.20 -43.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947753551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.704 kcal (2) G-P(sol) polarization free energy of solvation -32.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds