Wall clock time and date at job start Tue Mar 31 2020 22:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.70478 * 2 1 4 4 C 1.53195 * 109.58641 * 239.64243 * 2 1 3 5 5 C 1.53045 * 109.31006 * 294.85083 * 4 2 1 6 6 H 1.08992 * 109.45897 * 58.65449 * 5 4 2 7 7 N 1.46500 * 109.45349 * 178.63072 * 5 4 2 8 8 C 1.34785 * 119.99343 * 205.02661 * 7 5 4 9 9 O 1.21559 * 120.00247 * 0.02562 * 8 7 5 10 10 C 1.47761 * 119.99802 * 179.97438 * 8 7 5 11 11 C 1.40600 * 120.26939 * 0.02562 * 10 8 7 12 12 N 1.30798 * 121.54194 * 180.02562 * 11 10 8 13 13 C 1.33821 * 121.71600 * 359.97438 * 12 11 10 14 14 C 1.40529 * 120.81721 * 180.02562 * 13 12 11 15 15 C 1.36135 * 119.81211 * 179.97438 * 14 13 12 16 16 C 1.39341 * 121.08808 * 0.02562 * 15 14 13 17 17 C 1.36133 * 120.83629 * 0.02562 * 16 15 14 18 18 C 1.40542 * 119.61906 * 359.97438 * 17 16 15 19 19 C 1.39006 * 120.26875 * 179.72230 * 10 8 7 20 20 C 1.53041 * 109.52473 * 298.63732 * 5 4 2 21 21 C 1.53169 * 109.32455 * 61.37985 * 20 5 4 22 22 N 1.46923 * 109.58499 * 120.35515 * 2 1 3 23 23 C 1.36938 * 120.63060 * 246.15354 * 22 2 1 24 24 H 1.07997 * 120.00477 * 331.83180 * 23 22 2 25 25 C 1.38814 * 120.00043 * 151.82882 * 23 22 2 26 26 N 1.31627 * 119.99987 * 343.08763 * 25 23 22 27 27 Si 1.86799 * 119.99883 * 163.08155 * 25 23 22 28 28 H 1.48489 * 109.47406 * 0.02562 * 27 25 23 29 29 H 1.48509 * 109.46874 * 120.00550 * 27 25 23 30 30 H 1.48499 * 109.47144 * 240.00045 * 27 25 23 31 31 H 1.08991 * 109.47419 * 180.35800 * 1 2 3 32 32 H 1.09006 * 109.47009 * 300.35857 * 1 2 3 33 33 H 1.09001 * 109.46863 * 60.35081 * 1 2 3 34 34 H 1.08996 * 109.49378 * 174.89927 * 4 2 1 35 35 H 1.08992 * 109.49471 * 54.80010 * 4 2 1 36 36 H 0.96997 * 120.00747 * 25.02736 * 7 5 4 37 37 H 1.08005 * 119.23207 * 359.97438 * 11 10 8 38 38 H 1.07998 * 120.09519 * 359.97438 * 14 13 12 39 39 H 1.07997 * 119.45146 * 179.97438 * 15 14 13 40 40 H 1.08006 * 119.57749 * 180.02562 * 16 15 14 41 41 H 1.07997 * 120.19516 * 180.02562 * 17 16 15 42 42 H 1.07999 * 121.01707 * 0.02562 * 19 10 8 43 43 H 1.09003 * 109.49187 * 181.31264 * 20 5 4 44 44 H 1.08990 * 109.49989 * 301.41008 * 20 5 4 45 45 H 1.09001 * 109.58584 * 185.56628 * 21 20 5 46 46 H 1.08993 * 109.71154 * 65.20680 * 21 20 5 47 47 H 0.96996 * 119.99377 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 1.6413 -2.2042 -1.1701 6 1 0.5565 -2.2815 -1.0992 7 7 2.1026 -2.8979 -2.3751 8 6 1.4750 -4.0159 -2.7909 9 8 0.5260 -4.4482 -2.1663 10 6 1.9397 -4.7154 -4.0066 11 6 3.0364 -4.2200 -4.7337 12 7 3.4684 -4.8188 -5.8134 13 6 2.8899 -5.9318 -6.2798 14 6 3.3699 -6.5601 -7.4415 15 6 2.7662 -7.6918 -7.8976 16 6 1.6737 -8.2431 -7.2311 17 6 1.1791 -7.6631 -6.1032 18 6 1.7776 -6.4937 -5.6037 19 6 1.3002 -5.8720 -4.4372 20 6 2.2800 -2.8461 0.0637 21 6 1.7690 -2.1410 1.3238 22 7 2.0225 -0.6995 1.1945 23 6 2.7052 -0.0210 2.1685 24 1 3.2771 0.8590 1.9140 25 6 2.6622 -0.4644 3.4833 26 7 1.7277 -1.3104 3.8623 27 14 3.9305 0.1395 4.7145 28 1 4.8651 1.0776 4.0427 29 1 3.2435 0.8396 5.8297 30 1 4.6905 -1.0182 5.2504 31 1 -0.3634 -1.0275 0.0064 32 1 -0.3633 0.5194 0.8868 33 1 -0.3633 0.5084 -0.8931 34 1 3.1297 -0.6504 -1.2912 35 1 1.6075 -0.2785 -2.1367 36 1 2.8596 -2.5527 -2.8738 37 1 3.5334 -3.3235 -4.3933 38 1 4.2154 -6.1463 -7.9710 39 1 3.1396 -8.1696 -8.7912 40 1 1.2136 -9.1420 -7.6142 41 1 0.3322 -8.0994 -5.5946 42 1 0.4583 -6.2770 -3.8955 43 1 2.0122 -3.9020 0.1042 44 1 3.3638 -2.7472 0.0055 45 1 2.2943 -2.5275 2.1972 46 1 0.6988 -2.3153 1.4343 47 1 1.6979 -1.6204 4.7809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947753552.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:34 Heat of formation + Delta-G solvation = 37.499152 kcal Electronic energy + Delta-G solvation = -28603.780493 eV Core-core repulsion = 24751.638807 eV Total energy + Delta-G solvation = -3852.141686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.25043 -39.70990 -37.88481 -37.13839 -34.61723 -33.73813 -32.61411 -31.41369 -30.56310 -30.38682 -29.38493 -26.96236 -25.17423 -24.39297 -24.08847 -22.44601 -22.07550 -21.82374 -20.70729 -18.92047 -18.27093 -17.88100 -17.48600 -16.67507 -16.09513 -15.72833 -15.11811 -14.93778 -14.76413 -14.52136 -14.32013 -14.09870 -13.80650 -13.75787 -13.71956 -13.36193 -13.05914 -12.66761 -12.50964 -12.23789 -12.15860 -12.11161 -11.85952 -11.41529 -11.08778 -10.93997 -10.84496 -10.80840 -10.63635 -10.36523 -10.28255 -10.17699 -9.99171 -9.73446 -9.65734 -9.36024 -9.19059 -8.78733 -8.63579 -8.41736 -6.68854 -5.78722 -3.21618 -0.08923 0.27665 1.53749 2.29164 3.13182 3.17932 3.37250 3.45250 3.46951 3.79795 3.84476 4.20856 4.37720 4.45164 4.48350 4.48607 4.67785 4.75384 4.87207 5.04160 5.26084 5.37496 5.38643 5.40378 5.51794 5.55891 5.58772 5.67296 5.77422 5.91953 6.00685 6.01138 6.05931 6.10611 6.24935 6.28429 6.39635 6.40571 6.45218 6.57685 6.64175 6.78145 6.85428 6.94146 7.15253 7.38072 7.49356 7.59385 7.70079 7.80445 8.25534 8.45599 9.21243 9.84568 10.41240 11.29536 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024734 B = 0.002159 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.760436 B =12968.612820 C =13024.937238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 H 0.066 0.934 4 C -0.134 4.134 5 C 0.149 3.851 6 H 0.088 0.912 7 N -0.717 5.717 8 C 0.559 3.441 9 O -0.533 6.533 10 C -0.188 4.188 11 C 0.163 3.837 12 N -0.477 5.477 13 C 0.139 3.861 14 C -0.098 4.098 15 C -0.093 4.093 16 C -0.122 4.122 17 C -0.085 4.085 18 C -0.113 4.113 19 C 0.010 3.990 20 C -0.147 4.147 21 C 0.174 3.826 22 N -0.585 5.585 23 C -0.252 4.252 24 H 0.066 0.934 25 C 0.003 3.997 26 N -0.900 5.900 27 Si 0.901 3.099 28 H -0.278 1.278 29 H -0.291 1.291 30 H -0.289 1.289 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.036 0.964 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.394 0.606 37 H 0.163 0.837 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.154 0.846 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.089 0.911 46 H 0.022 0.978 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.986 -10.932 -23.281 25.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.084 0.916 4 C -0.173 4.173 5 C 0.047 3.953 6 H 0.106 0.894 7 N -0.367 5.367 8 C 0.345 3.655 9 O -0.411 6.411 10 C -0.193 4.193 11 C -0.011 4.011 12 N -0.184 5.184 13 C 0.019 3.981 14 C -0.117 4.117 15 C -0.113 4.113 16 C -0.140 4.140 17 C -0.104 4.104 18 C -0.115 4.115 19 C -0.016 4.016 20 C -0.187 4.187 21 C 0.047 3.953 22 N -0.306 5.306 23 C -0.381 4.381 24 H 0.084 0.916 25 C -0.196 4.196 26 N -0.544 5.544 27 Si 0.731 3.269 28 H -0.203 1.203 29 H -0.218 1.218 30 H -0.216 1.216 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.229 0.771 37 H 0.180 0.820 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.172 0.828 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.107 0.893 46 H 0.040 0.960 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.010 -11.010 -23.163 25.667 hybrid contribution 0.279 0.063 0.960 1.001 sum 1.288 -10.946 -22.204 24.789 Atomic orbital electron populations 1.22305 0.98684 1.01162 1.00064 1.20441 0.91791 0.95129 0.86467 0.91569 1.22319 1.01273 0.94008 0.99730 1.21174 0.99961 0.91362 0.82843 0.89437 1.46278 1.34369 1.26736 1.29267 1.17946 0.83010 0.80902 0.83667 1.90797 1.27829 1.65680 1.56783 1.21098 1.00174 0.98975 0.99100 1.23079 0.91305 0.97532 0.89224 1.67959 1.29272 1.08162 1.12989 1.19027 0.92106 0.91877 0.95134 1.20841 1.00543 0.95546 0.94760 1.20995 0.95339 0.95300 0.99662 1.20957 0.96865 1.00438 0.95721 1.21098 0.99277 0.93788 0.96199 1.18855 0.98002 0.97817 0.96793 1.22001 0.96373 0.91276 0.91980 1.22574 1.00230 0.99184 0.96758 1.20737 0.97789 0.82915 0.93830 1.44172 1.63761 1.03444 1.19268 1.19196 1.21731 1.10587 0.86631 0.91619 1.25067 0.97690 0.99997 0.96850 1.70045 1.31708 1.35843 1.16801 0.86249 0.81270 0.78062 0.81331 1.20275 1.21786 1.21611 0.93181 0.92602 0.94484 0.91762 0.92482 0.77147 0.82046 0.84480 0.85091 0.85239 0.84786 0.82829 0.92889 0.92574 0.89301 0.96001 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 9.02 37.16 0.34 -2.74 16 2 C 0.17 3.36 3.29 -67.60 -0.22 3.13 16 3 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 4 C -0.13 -2.14 5.02 -26.61 -0.13 -2.28 16 5 C 0.15 2.51 2.21 -67.89 -0.15 2.36 16 6 H 0.09 1.65 5.94 -51.93 -0.31 1.35 16 7 N -0.72 -9.77 5.03 -54.73 -0.28 -10.04 16 8 C 0.56 8.23 7.74 -12.36 -0.10 8.14 16 9 O -0.53 -9.81 16.04 5.31 0.09 -9.72 16 10 C -0.19 -2.28 5.89 -104.83 -0.62 -2.90 16 11 C 0.16 1.76 10.68 -17.10 -0.18 1.57 16 12 N -0.48 -5.57 10.30 -10.67 -0.11 -5.68 16 13 C 0.14 1.53 6.61 -84.79 -0.56 0.97 16 14 C -0.10 -0.84 9.97 -39.47 -0.39 -1.24 16 15 C -0.09 -0.61 9.94 -39.93 -0.40 -1.00 16 16 C -0.12 -0.78 9.96 -39.93 -0.40 -1.18 16 17 C -0.08 -0.67 9.77 -39.47 -0.39 -1.05 16 18 C -0.11 -1.17 5.74 -106.81 -0.61 -1.78 16 19 C 0.01 0.12 9.46 -38.43 -0.36 -0.25 16 20 C -0.15 -2.87 5.65 -26.62 -0.15 -3.02 16 21 C 0.17 4.11 4.88 -3.72 -0.02 4.10 16 22 N -0.58 -14.03 2.70 -164.79 -0.44 -14.48 16 23 C -0.25 -6.70 9.58 -15.06 -0.14 -6.85 16 24 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 25 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 26 N -0.90 -25.89 11.20 55.49 0.62 -25.27 16 27 Si 0.90 21.47 29.59 -169.99 -5.03 16.44 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 31 H 0.05 0.98 5.72 -51.93 -0.30 0.68 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.39 4.14 6.63 -40.82 -0.27 3.87 16 37 H 0.16 1.30 6.37 -52.48 -0.33 0.97 16 38 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 41 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.15 1.62 7.70 -52.49 -0.40 1.21 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 46 H 0.02 0.56 7.49 -51.93 -0.39 0.17 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 377.64 15.07 5.69 5.69 Total: -1.00 -32.33 377.64 -10.54 -42.88 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.51 Total: 4.21 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -4.58 Total: -4.03 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.21 Total: -55.47 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.33 -10.54 -42.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947753552.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.374 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds