Wall clock time and date at job start Tue Mar 31 2020 22:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.70478 * 2 1 4 4 C 1.53195 * 109.58641 * 239.64243 * 2 1 3 5 5 C 1.53045 * 109.31006 * 294.85083 * 4 2 1 6 6 H 1.08992 * 109.45897 * 58.65449 * 5 4 2 7 7 N 1.46500 * 109.45349 * 178.63072 * 5 4 2 8 8 C 1.34785 * 119.99343 * 205.02661 * 7 5 4 9 9 O 1.21559 * 120.00247 * 0.02562 * 8 7 5 10 10 C 1.47761 * 119.99802 * 179.97438 * 8 7 5 11 11 C 1.40600 * 120.26939 * 0.02562 * 10 8 7 12 12 N 1.30798 * 121.54194 * 180.02562 * 11 10 8 13 13 C 1.33821 * 121.71600 * 359.97438 * 12 11 10 14 14 C 1.40529 * 120.81721 * 180.02562 * 13 12 11 15 15 C 1.36135 * 119.81211 * 179.97438 * 14 13 12 16 16 C 1.39341 * 121.08808 * 0.02562 * 15 14 13 17 17 C 1.36133 * 120.83629 * 0.02562 * 16 15 14 18 18 C 1.40542 * 119.61906 * 359.97438 * 17 16 15 19 19 C 1.39006 * 120.26875 * 179.72230 * 10 8 7 20 20 C 1.53041 * 109.52473 * 298.63732 * 5 4 2 21 21 C 1.53169 * 109.32455 * 61.37985 * 20 5 4 22 22 N 1.46923 * 109.58499 * 120.35515 * 2 1 3 23 23 C 1.36938 * 120.63060 * 246.15354 * 22 2 1 24 24 H 1.07997 * 120.00477 * 331.83180 * 23 22 2 25 25 C 1.38814 * 120.00043 * 151.82882 * 23 22 2 26 26 N 1.31627 * 119.99987 * 343.08763 * 25 23 22 27 27 Si 1.86799 * 119.99883 * 163.08155 * 25 23 22 28 28 H 1.48489 * 109.47406 * 0.02562 * 27 25 23 29 29 H 1.48509 * 109.46874 * 120.00550 * 27 25 23 30 30 H 1.48499 * 109.47144 * 240.00045 * 27 25 23 31 31 H 1.08991 * 109.47419 * 180.35800 * 1 2 3 32 32 H 1.09006 * 109.47009 * 300.35857 * 1 2 3 33 33 H 1.09001 * 109.46863 * 60.35081 * 1 2 3 34 34 H 1.08996 * 109.49378 * 174.89927 * 4 2 1 35 35 H 1.08992 * 109.49471 * 54.80010 * 4 2 1 36 36 H 0.96997 * 120.00747 * 25.02736 * 7 5 4 37 37 H 1.08005 * 119.23207 * 359.97438 * 11 10 8 38 38 H 1.07998 * 120.09519 * 359.97438 * 14 13 12 39 39 H 1.07997 * 119.45146 * 179.97438 * 15 14 13 40 40 H 1.08006 * 119.57749 * 180.02562 * 16 15 14 41 41 H 1.07997 * 120.19516 * 180.02562 * 17 16 15 42 42 H 1.07999 * 121.01707 * 0.02562 * 19 10 8 43 43 H 1.09003 * 109.49187 * 181.31264 * 20 5 4 44 44 H 1.08990 * 109.49989 * 301.41008 * 20 5 4 45 45 H 1.09001 * 109.58584 * 185.56628 * 21 20 5 46 46 H 1.08993 * 109.71154 * 65.20680 * 21 20 5 47 47 H 0.96996 * 119.99377 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 1.6413 -2.2042 -1.1701 6 1 0.5565 -2.2815 -1.0992 7 7 2.1026 -2.8979 -2.3751 8 6 1.4750 -4.0159 -2.7909 9 8 0.5260 -4.4482 -2.1663 10 6 1.9397 -4.7154 -4.0066 11 6 3.0364 -4.2200 -4.7337 12 7 3.4684 -4.8188 -5.8134 13 6 2.8899 -5.9318 -6.2798 14 6 3.3699 -6.5601 -7.4415 15 6 2.7662 -7.6918 -7.8976 16 6 1.6737 -8.2431 -7.2311 17 6 1.1791 -7.6631 -6.1032 18 6 1.7776 -6.4937 -5.6037 19 6 1.3002 -5.8720 -4.4372 20 6 2.2800 -2.8461 0.0637 21 6 1.7690 -2.1410 1.3238 22 7 2.0225 -0.6995 1.1945 23 6 2.7052 -0.0210 2.1685 24 1 3.2771 0.8590 1.9140 25 6 2.6622 -0.4644 3.4833 26 7 1.7277 -1.3104 3.8623 27 14 3.9305 0.1395 4.7145 28 1 4.8651 1.0776 4.0427 29 1 3.2435 0.8396 5.8297 30 1 4.6905 -1.0182 5.2504 31 1 -0.3634 -1.0275 0.0064 32 1 -0.3633 0.5194 0.8868 33 1 -0.3633 0.5084 -0.8931 34 1 3.1297 -0.6504 -1.2912 35 1 1.6075 -0.2785 -2.1367 36 1 2.8596 -2.5527 -2.8738 37 1 3.5334 -3.3235 -4.3933 38 1 4.2154 -6.1463 -7.9710 39 1 3.1396 -8.1696 -8.7912 40 1 1.2136 -9.1420 -7.6142 41 1 0.3322 -8.0994 -5.5946 42 1 0.4583 -6.2770 -3.8955 43 1 2.0122 -3.9020 0.1042 44 1 3.3638 -2.7472 0.0055 45 1 2.2943 -2.5275 2.1972 46 1 0.6988 -2.3153 1.4343 47 1 1.6979 -1.6204 4.7809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947753552.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:33 Heat of formation + Delta-G solvation = 17.976916 kcal Electronic energy + Delta-G solvation = -28604.627040 eV Core-core repulsion = 24751.638807 eV Total energy + Delta-G solvation = -3852.988234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.05499 -40.88529 -39.34523 -37.91312 -36.11139 -34.52481 -34.35048 -32.68827 -31.96416 -31.10634 -30.85574 -28.54795 -26.41644 -25.61012 -25.11750 -23.71846 -23.27888 -23.12023 -21.89462 -20.28516 -19.35309 -18.92860 -18.57683 -18.12283 -17.14351 -16.92069 -16.47999 -16.21415 -15.69554 -15.58014 -15.50283 -15.31601 -15.18934 -15.02976 -14.65686 -14.46036 -14.28362 -14.13956 -14.10767 -13.87643 -13.15170 -12.92487 -12.78812 -12.74549 -12.66477 -12.55575 -12.43395 -12.28184 -12.04714 -11.97358 -11.77301 -11.62268 -11.49566 -11.37869 -11.00525 -10.56011 -10.55542 -10.11708 -9.82863 -9.31531 -8.67133 -7.84823 -5.29884 -0.84229 -0.43964 0.82144 1.46703 1.49084 1.49803 1.59060 2.02943 2.21274 2.52519 3.04561 3.13269 3.30937 3.51977 3.55351 3.63901 3.69580 3.77191 3.84039 3.97471 4.09382 4.21039 4.29177 4.32530 4.42023 4.45846 4.53297 4.68587 4.71783 4.75745 4.78977 4.86062 4.90960 4.94269 5.04275 5.09823 5.13650 5.17918 5.32945 5.35034 5.40062 5.45085 5.45752 5.48479 5.56997 5.70054 5.77514 5.83261 6.42362 6.48316 6.72950 7.14087 7.17078 7.89059 8.41171 9.21881 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024734 B = 0.002159 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.760436 B =12968.612820 C =13024.937238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.160 3.840 3 H 0.071 0.929 4 C -0.119 4.119 5 C 0.162 3.838 6 H 0.067 0.933 7 N -0.703 5.703 8 C 0.563 3.437 9 O -0.577 6.577 10 C -0.204 4.204 11 C 0.162 3.838 12 N -0.492 5.492 13 C 0.119 3.881 14 C -0.118 4.118 15 C -0.078 4.078 16 C -0.114 4.114 17 C -0.095 4.095 18 C -0.128 4.128 19 C 0.008 3.992 20 C -0.133 4.133 21 C 0.185 3.815 22 N -0.599 5.599 23 C -0.254 4.254 24 H 0.072 0.928 25 C -0.054 4.054 26 N -0.937 5.937 27 Si 0.964 3.036 28 H -0.263 1.263 29 H -0.296 1.296 30 H -0.294 1.294 31 H 0.034 0.966 32 H 0.028 0.972 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.413 0.587 37 H 0.186 0.814 38 H 0.147 0.853 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.043 0.957 44 H 0.061 0.939 45 H 0.052 0.948 46 H -0.008 1.008 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.251 -11.301 -26.875 29.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.090 0.910 4 C -0.159 4.159 5 C 0.057 3.943 6 H 0.085 0.915 7 N -0.353 5.353 8 C 0.350 3.650 9 O -0.458 6.458 10 C -0.209 4.209 11 C -0.012 4.012 12 N -0.199 5.199 13 C -0.002 4.002 14 C -0.136 4.136 15 C -0.098 4.098 16 C -0.132 4.132 17 C -0.114 4.114 18 C -0.130 4.130 19 C -0.018 4.018 20 C -0.173 4.173 21 C 0.058 3.942 22 N -0.322 5.322 23 C -0.384 4.384 24 H 0.090 0.910 25 C -0.249 4.249 26 N -0.583 5.583 27 Si 0.793 3.207 28 H -0.187 1.187 29 H -0.223 1.223 30 H -0.221 1.221 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.251 0.749 37 H 0.203 0.797 38 H 0.164 0.836 39 H 0.183 0.817 40 H 0.180 0.820 41 H 0.169 0.831 42 H 0.171 0.829 43 H 0.062 0.938 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.010 0.990 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.309 -11.353 -26.823 29.218 hybrid contribution -0.166 0.058 1.917 1.925 sum 2.143 -11.295 -24.906 27.431 Atomic orbital electron populations 1.22193 0.98212 1.00317 1.00587 1.20717 0.92185 0.95566 0.86236 0.91043 1.22158 1.02106 0.92610 0.98993 1.20786 0.98527 0.92132 0.82819 0.91483 1.45956 1.34842 1.26354 1.28198 1.18300 0.82174 0.80598 0.83921 1.90777 1.29842 1.66832 1.58334 1.20864 1.01647 0.99735 0.98684 1.23345 0.90836 0.98131 0.88893 1.67998 1.29761 1.08844 1.13336 1.19454 0.92540 0.92070 0.96106 1.21082 1.01490 0.96559 0.94485 1.21450 0.94296 0.93995 1.00027 1.21404 0.96245 1.00933 0.94625 1.21394 0.99882 0.93123 0.96994 1.19029 0.98408 0.98901 0.96628 1.22143 0.96193 0.91131 0.92362 1.22331 1.00411 0.98287 0.96269 1.20405 0.95518 0.83709 0.94569 1.44380 1.64095 1.03577 1.20101 1.19561 1.21294 1.10313 0.87224 0.90987 1.25819 0.99521 1.00843 0.98763 1.70211 1.33660 1.37719 1.16702 0.85246 0.79093 0.77416 0.78930 1.18677 1.22327 1.22123 0.94672 0.95286 0.90674 0.90547 0.88856 0.74902 0.79731 0.83573 0.81723 0.81969 0.83100 0.82917 0.93803 0.92003 0.92950 0.99025 0.94365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.76 9.02 71.98 0.65 -5.11 16 2 C 0.16 6.14 3.29 44.98 0.15 6.29 16 3 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 4 C -0.12 -3.53 5.02 30.67 0.15 -3.38 16 5 C 0.16 5.31 2.21 45.02 0.10 5.41 16 6 H 0.07 2.55 5.94 -2.39 -0.01 2.54 16 7 N -0.70 -18.21 5.03 -445.35 -2.24 -20.45 16 8 C 0.56 16.47 7.74 86.76 0.67 17.15 16 9 O -0.58 -21.81 16.04 -3.90 -0.06 -21.87 16 10 C -0.20 -4.88 5.89 -20.00 -0.12 -5.00 16 11 C 0.16 3.32 10.68 85.42 0.91 4.23 16 12 N -0.49 -10.98 10.30 -187.68 -1.93 -12.91 16 13 C 0.12 2.47 6.61 40.27 0.27 2.73 16 14 C -0.12 -1.76 9.97 22.34 0.22 -1.54 16 15 C -0.08 -0.74 9.94 22.05 0.22 -0.52 16 16 C -0.11 -1.06 9.96 22.05 0.22 -0.84 16 17 C -0.10 -1.30 9.77 22.34 0.22 -1.08 16 18 C -0.13 -2.53 5.74 -21.28 -0.12 -2.65 16 19 C 0.01 0.19 9.46 23.02 0.22 0.40 16 20 C -0.13 -5.27 5.65 30.66 0.17 -5.10 16 21 C 0.18 9.16 4.88 86.35 0.42 9.59 16 22 N -0.60 -29.19 2.70 -675.29 -1.82 -31.01 16 23 C -0.25 -13.63 9.58 84.03 0.81 -12.82 16 24 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 25 C -0.05 -3.04 4.92 84.86 0.42 -2.62 16 26 N -0.94 -56.31 11.20 21.65 0.24 -56.07 16 27 Si 0.96 45.01 29.59 68.60 2.03 47.04 16 28 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 29 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 30 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 31 H 0.03 1.40 5.72 -2.39 -0.01 1.39 16 32 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.41 7.62 6.63 -92.71 -0.61 7.01 16 37 H 0.19 2.60 6.37 -2.91 -0.02 2.58 16 38 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 39 H 0.17 0.44 8.06 -2.91 -0.02 0.41 16 40 H 0.16 0.46 8.06 -2.91 -0.02 0.43 16 41 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 42 H 0.15 3.32 7.70 -2.91 -0.02 3.30 16 43 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.05 2.97 6.06 -2.39 -0.01 2.95 16 46 H -0.01 -0.45 7.49 -2.39 -0.02 -0.47 16 47 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -74.25 377.64 2.17 -72.08 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.38 Total: 18.04 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 5.58 Total: 5.14 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -5.75 Total: -120.43 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.06 Total: -21.87 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -74.25 2.17 -72.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947753552.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.057 kcal (2) G-P(sol) polarization free energy of solvation -74.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds